Oat (ornithine aminotransferase) - Rat Genome Database

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Gene: Oat (ornithine aminotransferase) Heterocephalus glaber
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Symbol: Oat
Name: ornithine aminotransferase
RGD ID: 18901679
Description: ENCODES a protein that exhibits identical protein binding (inferred); ornithine aminotransferase activity (inferred); pyridoxal phosphate binding (inferred); INVOLVED IN arginine catabolic process to glutamate (inferred); arginine catabolic process to proline via ornithine (inferred); L-proline biosynthetic process (inferred); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); mitochondrial matrix (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ornithine aminotransferase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473722,664,129 - 22,678,535 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473722,657,158 - 22,679,213 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Oat
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473722,664,129 - 22,678,535 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473722,657,158 - 22,679,213 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
OAT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810124,397,303 - 124,418,923 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10124,397,303 - 124,418,976 (-)EnsemblGRCh38hg38GRCh38
GRCh3710126,085,872 - 126,107,492 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610126,075,862 - 126,097,441 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410126,075,861 - 126,097,450NCBI
Celera10119,858,073 - 119,879,754 (-)NCBICelera
Cytogenetic Map10q26.13NCBI
HuRef10119,770,641 - 119,792,323 (-)NCBIHuRef
CHM1_110126,367,759 - 126,389,447 (-)NCBICHM1_1
T2T-CHM13v2.010125,275,480 - 125,297,100 (-)NCBIT2T-CHM13v2.0
Oat
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397132,159,204 - 132,178,127 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7132,159,207 - 132,178,127 (-)EnsemblGRCm39 Ensembl
GRCm387132,557,475 - 132,576,398 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7132,557,478 - 132,576,398 (-)EnsemblGRCm38mm10GRCm38
MGSCv377139,749,158 - 139,768,081 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367132,395,822 - 132,408,481 (-)NCBIMGSCv36mm8
Celera7132,362,445 - 132,381,370 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map776.3NCBI
Oat
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81196,777,973 - 196,797,754 (-)NCBIGRCr8
mRatBN7.21187,347,862 - 187,367,644 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1187,347,865 - 187,367,682 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1195,698,027 - 195,717,805 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01202,876,939 - 202,896,719 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01195,550,072 - 195,569,851 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01204,562,289 - 204,582,070 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1204,562,289 - 204,582,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,555,927 - 211,575,708 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41192,026,623 - 192,046,404 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11192,176,503 - 192,196,285 (-)NCBI
Celera1185,092,131 - 185,111,563 (-)NCBICelera
Cytogenetic Map1q41NCBI
Oat
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554772,429,776 - 2,450,624 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554772,430,146 - 2,450,135 (-)NCBIChiLan1.0ChiLan1.0
OAT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28136,243,004 - 136,265,666 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110136,248,355 - 136,271,017 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010120,955,805 - 120,977,484 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110125,224,032 - 125,245,530 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10125,224,032 - 125,245,504 (-)Ensemblpanpan1.1panPan2
OAT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12833,763,661 - 33,788,817 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2833,758,473 - 33,788,759 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2833,826,851 - 33,851,641 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02834,320,605 - 34,345,627 (-)NCBIROS_Cfam_1.0
UU_Cfam_GSD_1.02834,120,928 - 34,145,786 (-)NCBIUU_Cfam_GSD_1.0
Oat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721312,817,898 - 12,836,941 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648612,723,305 - 12,743,422 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648612,723,363 - 12,743,367 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OAT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14133,808,193 - 133,830,761 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114133,808,193 - 133,830,517 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214145,318,779 - 145,341,064 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OAT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19117,060,819 - 117,083,160 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9117,060,393 - 117,083,126 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604878,377,280 - 78,399,645 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000013903   ⟹   ENSHGLP00000013762
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473722,664,129 - 22,678,535 (+)Ensembl
RefSeq Acc Id: XM_021253310   ⟹   XP_021108969
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473722,657,158 - 22,679,213 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021108969 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB14543 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013762
  ENSHGLP00100005296
GenBank Protein JAN99871 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021108969   ⟸   XM_021253310
- UniProtKB: G5BZ32 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000013762   ⟸   ENSHGLT00000013903


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009823 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100004017 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000013903 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100005377 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
InterPro Aminotrans_3 UniProtKB/TrEMBL
  Aminotrans_3_PPA_site UniProtKB/TrEMBL
  Class-III_PLP-dep_AT UniProtKB/TrEMBL
  Orn_aminotrans UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_small UniProtKB/TrEMBL
NCBI Gene Oat ENTREZGENE
PANTHER AMINOTRANSFERASE CLASS III UniProtKB/TrEMBL
  ORNITHINE AMINOTRANSFERASE, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Aminotran_3 UniProtKB/TrEMBL
PIRSF Transaminase_4ab_Lys_Orn UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt G5BZ32 ENTREZGENE, UniProtKB/TrEMBL