Fbxo15 (F-box protein 15) - Rat Genome Database

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Gene: Fbxo15 (F-box protein 15) Heterocephalus glaber
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Symbol: Fbxo15
Name: F-box protein 15
RGD ID: 18901577
Description: ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intestinal volvulus (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN SCF ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box only protein 15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248066,521,208 - 6,586,709 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248066,521,185 - 6,584,678 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fbxo15Naked Mole-Ratchromosome 18q deletion syndrome  ISOFBXO15 (Homo sapiens)8554872ClinVar Annotator: match by term: Monosomy 18q and deletion 18qClinVarPMID:25741868 and PMID:31690835
Fbxo15Naked Mole-Ratintestinal volvulus  ISOFBXO15 (Homo sapiens)8554872ClinVar Annotator: match by term: INTESTINAL MALROTATION and FAMILIALClinVarPMID:25741868
Fbxo15Naked Mole-RatNeurodevelopmental Disorders  ISOFBXO15 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Fbxo15Naked Mole-Ratpulmonary valve stenosis  ISOFBXO15 (Homo sapiens)8554872ClinVar Annotator: match by term: Pulmonary valve stenosisClinVarPMID:25741868
Fbxo15Naked Mole-RatVolvulus Of Midgut  ISOFBXO15 (Homo sapiens)8554872ClinVar Annotator: match by term: Volvulus of midgutClinVarPMID:25741868


Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fbxo15Naked Mole-RatSCF ubiquitin ligase complex part_ofIEAPANTHER:PTN000520701 and PANTHER:PTN001077031150520179 TreeGrafterGO_REF:0000118

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fbxo15Naked Mole-Ratprotein binding enablesISOUniProtKB:Q8WXH29068941 PMID:32814053IntActPMID:32814053
Fbxo15Naked Mole-Ratprotein binding enablesISOPR:Q9WTX5 and PR:Q9WTX69068941 PMID:12665572MGIPMID:12665572

PMID:22301074  



Fbxo15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248066,521,208 - 6,586,709 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248066,521,185 - 6,584,678 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FBXO15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381874,073,368 - 74,147,834 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1874,073,353 - 74,147,843 (-)EnsemblGRCh38hg38GRCh38
GRCh371871,740,603 - 71,815,069 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361869,891,585 - 69,965,929 (-)NCBINCBI36Build 36hg18NCBI36
Build 341869,891,585 - 69,965,929NCBI
Celera1868,605,113 - 68,679,631 (-)NCBICelera
Cytogenetic Map18q22.3NCBI
HuRef1868,473,086 - 68,547,604 (-)NCBIHuRef
CHM1_11871,735,783 - 71,810,300 (-)NCBICHM1_1
T2T-CHM13v2.01874,294,328 - 74,368,800 (-)NCBIT2T-CHM13v2.0
Fbxo15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391884,952,677 - 84,999,601 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1884,952,907 - 84,999,598 (+)EnsemblGRCm39 Ensembl
GRCm381884,934,552 - 84,981,476 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1884,934,782 - 84,981,473 (+)EnsemblGRCm38mm10GRCm38
MGSCv371885,104,417 - 85,150,784 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361885,069,218 - 85,115,585 (+)NCBIMGSCv36mm8
Celera1885,999,925 - 86,046,500 (+)NCBICelera
Cytogenetic Map18E4NCBI
cM Map1857.53NCBI
Fbxo15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81880,594,444 - 80,909,549 (+)NCBIGRCr8
mRatBN7.21878,319,577 - 78,634,695 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1878,319,534 - 78,390,765 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1880,430,603 - 80,501,496 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01881,102,667 - 81,173,562 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01878,938,351 - 79,009,237 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01881,785,408 - 81,882,796 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1881,821,127 - 81,882,796 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01880,824,116 - 80,920,461 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41881,542,665 - 81,599,809 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11881,602,639 - 81,673,161 (+)NCBI
Celera1876,911,761 - 77,001,110 (+)NCBICelera
Cytogenetic Map18q12.3NCBI
Fbxo15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540257,523,696 - 57,586,251 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540257,524,726 - 57,586,198 (-)NCBIChiLan1.0ChiLan1.0
FBXO15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21791,603,572 - 91,677,599 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11877,296,195 - 77,370,222 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01867,455,924 - 67,529,959 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11870,740,443 - 70,814,440 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1870,740,443 - 70,814,441 (-)Ensemblpanpan1.1panPan2
FBXO15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115,182,224 - 5,231,520 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15,182,244 - 5,231,424 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha16,189,500 - 6,236,997 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014,992,651 - 5,040,145 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14,992,642 - 5,040,142 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.115,031,428 - 5,078,923 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014,985,124 - 5,032,612 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.015,156,339 - 5,203,832 (+)NCBIUU_Cfam_GSD_1.0
Fbxo15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494418,950,876 - 19,029,039 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366164,272,395 - 4,332,238 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366164,272,502 - 4,332,172 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1149,856,489 - 149,896,536 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11149,856,032 - 149,898,829 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21165,983,435 - 166,232,074 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1185,745,434 - 5,822,855 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl185,753,036 - 5,822,888 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606020,053,872 - 20,137,642 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.






Ensembl Acc Id: ENSHGLT00000002308   ⟹   ENSHGLP00000002259
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248066,521,208 - 6,586,709 (+)Ensembl
RefSeq Acc Id: XM_004861959   ⟹   XP_004862016
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248066,521,185 - 6,584,678 (+)NCBI
RefSeq Acc Id: XM_004861960   ⟹   XP_004862017
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248066,521,185 - 6,584,678 (+)NCBI
RefSeq Acc Id: XM_013078556   ⟹   XP_012934010
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248066,527,922 - 6,584,678 (+)NCBI
RefSeq Acc Id: XM_021242125   ⟹   XP_021097784
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248066,521,185 - 6,584,678 (+)NCBI
Protein RefSeqs XP_004862016 (Get FASTA)   NCBI Sequence Viewer  
  XP_004862017 (Get FASTA)   NCBI Sequence Viewer  
  XP_012934010 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002259
RefSeq Acc Id: XP_004862016   ⟸   XM_004861959
- Peptide Label: isoform X1
- UniProtKB: A0AAX6PXN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004862017   ⟸   XM_004861960
- Peptide Label: isoform X3
- UniProtKB: A0AAX6PX74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097784   ⟸   XM_021242125
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RP70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012934010   ⟸   XM_013078556
- Peptide Label: isoform X4
- UniProtKB: A0AAX6R6Z7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002259   ⟸   ENSHGLT00000002308



1 to 16 of 16 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000001715 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002308 ENTREZGENE
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
NCBI Gene Fbxo15 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 15 UniProtKB/TrEMBL
  F-BOX ONLY PROTEIN 15 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
Superfamily-SCOP F-box domain UniProtKB/TrEMBL
UniProt A0AAX6PX74 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PXN2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R6Z7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RP70 ENTREZGENE, UniProtKB/TrEMBL
1 to 16 of 16 rows