Csf2ra (colony stimulating factor 2 receptor subunit alpha) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Csf2ra (colony stimulating factor 2 receptor subunit alpha) Heterocephalus glaber
Analyze
Symbol: Csf2ra
Name: colony stimulating factor 2 receptor subunit alpha
RGD ID: 18899926
Description: INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (ortholog); granulocyte-macrophage colony-stimulating factor signaling pathway (ortholog); positive regulation of leukocyte proliferation (ortholog); PARTICIPATES IN granulocyte-macrophage colony-stimulating factor signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); pulmonary alveolar proteinosis (ortholog); Pulmonary Surfactant Metabolism Dysfunction 4 (ortholog); FOUND IN granulocyte macrophage colony-stimulating factor receptor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: colony stimulating factor 2 receptor alpha subunit; granulocyte-macrophage colony-stimulating factor receptor subunit alpha
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624834616,180 - 628,794 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Csf2ra
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624834616,180 - 628,794 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CSF2RA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X1,268,814 - 1,325,218 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38Y1,268,814 - 1,325,218 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY1,268,793 - 1,325,373 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 EnsemblX1,268,793 - 1,325,373 (+)EnsemblGRCh38hg38GRCh38
GRCh37X1,387,707 - 1,444,111 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37Y1,337,707 - 1,394,111 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y1,347,701 - 1,388,827 (+)NCBINCBI36Build 36hg18NCBI36
Build 36X1,347,701 - 1,388,827 (+)NCBINCBI36Build 36hg18NCBI36
Build 34Y1,355,172 - 1,396,299NCBI
CeleraX5,684,057 - 5,726,879 (+)NCBICelera
Cytogenetic MapX;YNCBI
CHM1_1X1,418,017 - 1,458,211 (+)NCBICHM1_1
T2T-CHM13v2.0Y1,129,416 - 1,189,240 (+)NCBIT2T-CHM13v2.0
T2T-CHM13v2.0X1,116,126 - 1,174,802 (+)NCBIT2T-CHM13v2.0
Csf2ra
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391961,205,629 - 61,221,141 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1961,212,395 - 61,216,867 (-)EnsemblGRCm39 Ensembl
GRCm381961,217,191 - 61,228,461 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1961,223,957 - 61,228,429 (-)EnsemblGRCm38mm10GRCm38
MGSCv371961,300,305 - 61,304,321 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361961,279,074 - 61,283,022 (-)NCBIMGSCv36mm8
Celera1963,421,543 - 63,425,590 (-)NCBICelera
Cytogenetic Map19D3NCBI
cM Map1956.89NCBI
Csf2ra
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814113,219 - 118,808 (-)NCBIGRCr8
mRatBN7.21498,089 - 103,261 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1489,172 - 103,128 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14116,168 - 121,062 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0141,417,943 - 1,422,837 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014114,615 - 119,509 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0141,462,292 - 1,467,264 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl141,462,358 - 1,467,264 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0141,465,139 - 1,469,667 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera14661,818 - 666,688 (+)NCBICelera
Cytogenetic Map14p22NCBI
CSF2RA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X832,170 - 855,548 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX832,046 - 853,876 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX772,774 - 796,202 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X742,740 - 766,122 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X734,899 - 758,240 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X751,242 - 774,663 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X748,192 - 771,608 (+)NCBIUU_Cfam_GSD_1.0
LOC101965277
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404953534,206 - 541,365 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366443,835,462 - 3,842,471 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSF2RA
(Sus scrofa - pig)		 No map positions available.
LOC103247514
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666141112,013 - 168,815 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004867307   ⟹   XP_004867364
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624834616,180 - 628,794 (+)NCBI
RefSeq Acc Id: XM_004867308   ⟹   XP_004867365
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624834617,031 - 628,794 (+)NCBI
RefSeq Acc Id: XM_004867309   ⟹   XP_004867366
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624834616,180 - 628,794 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004867364 (Get FASTA)   NCBI Sequence Viewer  
  XP_004867365 (Get FASTA)   NCBI Sequence Viewer  
  XP_004867366 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004867366   ⟸   XM_004867309
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004867364   ⟸   XM_004867307
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004867365   ⟸   XM_004867308
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene Csf2ra ENTREZGENE
UniProt A0AAX6Q5R7_HETGA UniProtKB/TrEMBL
  A0AAX6Q6V5_HETGA UniProtKB/TrEMBL
  A0AAX6Q6Z0_HETGA UniProtKB/TrEMBL