RSAD2 (radical S-adenosyl methionine domain containing 2) - Rat Genome Database

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Gene: RSAD2 (radical S-adenosyl methionine domain containing 2) Chlorocebus sabaeus
Analyze
Symbol: RSAD2
Name: radical S-adenosyl methionine domain containing 2
RGD ID: 18786172
Description: ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (inferred); catalytic activity (inferred); iron-sulfur cluster binding (inferred); INVOLVED IN ossification (ortholog); regulation of ossification (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); congestive heart failure (ortholog); COVID-19 (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); fibrillar center (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: radical S-adenosyl methionine domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114100,778,801 - 100,804,205 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14100,778,302 - 100,798,044 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604511,543,806 - 11,563,560 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RSAD2Green MonkeyCOVID-19  ISORSAD2 (Homo sapiens)9068941mRNA:increased expression:bronchoalveolar lavage (human)RGDPMID:32407669 and REF_RGD_ID:30296672
RSAD2Green Monkeyrespiratory syncytial virus infectious disease  ISORsad2 (Chinchilla lanigera)9068941 RGDPMID:23018837 and REF_RGD_ID:11554170
RSAD2Green Monkeyrespiratory syncytial virus infectious disease treatmentISORSAD2 (Homo sapiens)9068941 RGDPMID:23018837 and REF_RGD_ID:11554170
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RSAD2Green MonkeyAnimal Disease Models  ISORSAD2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:36071497
RSAD2Green Monkeycongestive heart failure  ISORSAD2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:36071497
RSAD2Green MonkeyHuman Influenza  ISORSAD2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:23326326
RSAD2Green MonkeyMyocardial Ischemia  ISORSAD2 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:16214533


Biological Process
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RSAD2Green MonkeyCD4-positive, alpha-beta T cell activation involved_inIEAUniProtKB:Q8CBB9 and ensembl:ENSMUSP00000020970150520179 EnsemblGO_REF:0000107
RSAD2Green MonkeyCD4-positive, alpha-beta T cell differentiation involved_inIEAUniProtKB:Q8CBB9 and ensembl:ENSMUSP00000020970150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeydefense response to virus involved_inIEAUniProtKB-KW:KW-0051150520179 UniProtGO_REF:0000043
RSAD2Green Monkeydefense response to virus involved_inIEAPANTHER:PTN000481997150520179 TreeGrafterGO_REF:0000118
RSAD2Green Monkeydefense response to virus involved_inIEAUniProtKB:Q8CBB9 more ...150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeydefense response to virus involved_inIEAInterPro:IPR026372150520179 InterProGO_REF:0000002
RSAD2Green Monkeyimmune system process involved_inIEAUniProtKB-KW:KW-0391150520179 UniProtGO_REF:0000043
RSAD2Green Monkeyinnate immune response involved_inIEAUniProtKB-KW:KW-0399150520179 UniProtGO_REF:0000043
RSAD2Green Monkeynegative regulation of protein secretion involved_inIEAUniProtKB:Q8WXG1 and ensembl:ENSP00000371471150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeynegative regulation of viral genome replication involved_inIEAUniProtKB:Q8CBB9 more ...150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeyossification  ISORsad2 (Rattus norvegicus)9068941 RGDPMID:10698968 and REF_RGD_ID:631877
RSAD2Green Monkeypositive regulation of immune response involved_inIEAPANTHER:PTN000481997150520179 TreeGrafterGO_REF:0000118
RSAD2Green Monkeypositive regulation of T-helper 2 cell cytokine production involved_inIEAUniProtKB:Q8CBB9 and ensembl:ENSMUSP00000020970150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeypositive regulation of toll-like receptor 7 signaling pathway involved_inIEAUniProtKB:Q8CBB9 and ensembl:ENSMUSP00000020970150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeypositive regulation of toll-like receptor 9 signaling pathway involved_inIEAUniProtKB:Q8CBB9 and ensembl:ENSMUSP00000020970150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeyregulation of ossification  ISORsad2 (Rattus norvegicus)9068941 RGDPMID:10698968 and REF_RGD_ID:631877
RSAD2Green Monkeyresponse to virus involved_inIEAUniProtKB:Q8CBB9 more ...150520179 EnsemblGO_REF:0000107
1 to 17 of 17 rows

Cellular Component
1 to 15 of 15 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RSAD2Green Monkeyendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
RSAD2Green Monkeyendoplasmic reticulum part_ofIEAUniProtKB:Q8CBB9 and ensembl:ENSMUSP00000020970150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeyendoplasmic reticulum located_inIEAPANTHER:PTN000481997150520179 TreeGrafterGO_REF:0000118
RSAD2Green Monkeyendoplasmic reticulum located_inIEAUniProtKB:Q8WXG1 and ensembl:ENSP00000371471150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeyendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-0097150520179 UniProtGO_REF:0000044
RSAD2Green Monkeyendoplasmic reticulum membrane located_inIEAUniProtKB:Q8WXG1 and ensembl:ENSP00000371471150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeyendoplasmic reticulum membrane located_inIEAInterPro:IPR026372150520179 InterProGO_REF:0000002
RSAD2Green Monkeyfibrillar center located_inIEAUniProtKB:Q8WXG1 and ensembl:ENSP00000371471150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeylipid droplet located_inIEAInterPro:IPR026372150520179 InterProGO_REF:0000002
RSAD2Green Monkeylipid droplet located_inIEAUniProtKB:Q8CBB9 and ensembl:ENSMUSP00000020970150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeymembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
RSAD2Green Monkeymitochondrial inner membrane located_inIEAUniProtKB:Q8WXG1 and ensembl:ENSP00000371471150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeymitochondrial outer membrane located_inIEAUniProtKB:Q8WXG1 and ensembl:ENSP00000371471150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeymitochondrion located_inIEAUniProtKB:Q8WXG1 and ensembl:ENSP00000371471150520179 EnsemblGO_REF:0000107
RSAD2Green Monkeymitochondrion located_inIEAPANTHER:PTN000481997150520179 TreeGrafterGO_REF:0000118
1 to 15 of 15 rows

Molecular Function
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RSAD2Green Monkey4 iron, 4 sulfur cluster binding enablesIEAUniProtKB:Q8WXG1 and ensembl:ENSP00000371471150520179 EnsemblGO_REF:0000107
RSAD2Green Monkey4 iron, 4 sulfur cluster binding enablesIEAUniProtKB-KW:KW-0004150520179 UniProtGO_REF:0000043
RSAD2Green Monkey4 iron, 4 sulfur cluster binding enablesIEAPANTHER:PTN000481997150520179 TreeGrafterGO_REF:0000118
RSAD2Green Monkeycatalytic activity enablesIEAInterPro:IPR006638 and InterPro:IPR007197150520179 InterProGO_REF:0000002
RSAD2Green Monkeyiron-sulfur cluster binding enablesIEAInterPro:IPR006638 and InterPro:IPR007197150520179 InterProGO_REF:0000002
RSAD2Green Monkeyiron-sulfur cluster binding enablesIEAUniProtKB-KW:KW-0411150520179 UniProtGO_REF:0000043
RSAD2Green Monkeymetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
RSAD2Green Monkeyprotein binding enablesISOUniProtKB:O760719068941 PMID:24245804IntActPMID:24245804
RSAD2Green Monkeyprotein binding enablesISOUniProtKB:P550849068941 PMID:21527675UniProtPMID:21527675
RSAD2Green Monkeyprotein binding enablesISOUniProtKB:P70196 and UniProtKB:Q624069068941 PMID:21435586UniProtPMID:21435586
RSAD2Green Monkeyprotein binding enablesISOUniProtKB:P02654 more ...9068941 PMID:32296183IntActPMID:32296183
RSAD2Green Monkeyprotein binding enablesISOUniProtKB:P16778 and UniProtKB:P550849068941 PMID:21527675UniProtPMID:21527675
RSAD2Green Monkeyprotein binding enablesISOUniProtKB:Q9P0L09068941 PMID:21957124 and PMID:22045669IntActPMID:21957124 and PMID:22045669
1 to 13 of 13 rows

PMID:22301074   PMID:30032202  



RSAD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114100,778,801 - 100,804,205 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14100,778,302 - 100,798,044 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604511,543,806 - 11,563,560 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RSAD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3826,865,885 - 6,898,239 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl26,865,557 - 6,898,239 (+)EnsemblGRCh38hg38GRCh38
GRCh3727,006,016 - 7,038,370 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3626,935,247 - 6,955,814 (+)NCBINCBI36Build 36hg18NCBI36
Build 3426,968,505 - 6,988,515NCBI
Celera26,930,748 - 6,951,316 (+)NCBICelera
Cytogenetic Map2p25.2NCBI
HuRef26,865,409 - 6,885,974 (+)NCBIHuRef
CHM1_126,947,350 - 6,967,911 (+)NCBICHM1_1
T2T-CHM13v2.026,887,387 - 6,919,736 (+)NCBIT2T-CHM13v2.0
Rsad2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391226,492,742 - 26,506,451 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1226,492,745 - 26,506,451 (-)EnsemblGRCm39 Ensembl
GRCm381226,442,743 - 26,456,452 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1226,442,746 - 26,456,452 (-)EnsemblGRCm38mm10GRCm38
MGSCv371227,127,608 - 27,141,317 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361227,029,021 - 27,042,699 (-)NCBIMGSCv36mm8
Celera1227,901,184 - 27,914,822 (-)NCBICelera
Cytogenetic Map12A2NCBI
cM Map129.69NCBI
Rsad2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8648,774,985 - 48,788,245 (-)NCBIGRCr8
mRatBN7.2643,046,514 - 43,059,737 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl643,047,658 - 43,059,699 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx643,359,103 - 43,372,219 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0643,673,963 - 43,687,086 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0643,107,103 - 43,120,223 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0645,655,947 - 45,669,083 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl645,655,954 - 45,669,148 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0654,375,724 - 54,388,860 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4644,100,775 - 44,113,910 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1644,103,900 - 44,117,036 (-)NCBI
Celera642,313,474 - 42,326,629 (-)NCBICelera
Cytogenetic Map6q16NCBI
Rsad2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554871,987,405 - 2,001,731 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554871,988,226 - 2,001,731 (-)NCBIChiLan1.0ChiLan1.0
RSAD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212119,613,920 - 119,646,167 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A119,617,895 - 119,650,127 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A6,873,821 - 6,906,087 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A7,010,762 - 7,042,500 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A7,021,937 - 7,042,961 (+)Ensemblpanpan1.1panPan2
RSAD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1174,488,202 - 4,508,705 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl174,487,957 - 4,507,181 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha174,413,914 - 4,434,446 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0174,590,443 - 4,611,109 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl174,590,447 - 4,611,103 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1174,478,041 - 4,498,585 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0174,486,485 - 4,506,800 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0174,500,286 - 4,520,826 (+)NCBIUU_Cfam_GSD_1.0
Rsad2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629249,163,650 - 49,180,994 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365323,921,807 - 3,936,042 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365323,921,824 - 3,936,027 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSAD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3128,877,186 - 128,897,815 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13128,880,853 - 128,897,809 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23137,666,404 - 137,683,529 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Rsad2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248463,395,406 - 3,408,626 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248463,395,536 - 3,408,616 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in RSAD2
712 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20


RefSeq Transcripts XM_007971580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007971581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000005091   ⟹   ENSCSAP00000003326
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl14100,778,302 - 100,798,044 (-)Ensembl
RefSeq Acc Id: XM_007971580   ⟹   XP_007969771
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.114100,778,801 - 100,798,851 (-)NCBI
Vero_WHO_p1.0NW_02366604511,543,806 - 11,563,560 (+)NCBI
Sequence:
Protein RefSeqs XP_007969771 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003326.1
RefSeq Acc Id: XP_007969771   ⟸   XM_007971580
- UniProtKB: A0A0D9R3Y7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000003326   ⟸   ENSCSAT00000005091



1 to 18 of 18 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000007051 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005091.1 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.70 UniProtKB/TrEMBL
InterPro Aldolase_TIM UniProtKB/TrEMBL
  Elp3/MiaB/NifB UniProtKB/TrEMBL
  RSAD2 UniProtKB/TrEMBL
  RSAD2/Viperin_antiviral UniProtKB/TrEMBL
  rSAM UniProtKB/TrEMBL
KEGG Report csab:103220885 UniProtKB/TrEMBL
NCBI Gene RSAD2 ENTREZGENE
PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam Fer4_12 UniProtKB/TrEMBL
  Radical_SAM UniProtKB/TrEMBL
PROSITE RADICAL_SAM UniProtKB/TrEMBL
SMART Elp3 UniProtKB/TrEMBL
Superfamily-SCOP Radical SAM enzymes UniProtKB/TrEMBL
UniProt A0A0D9R3Y7 ENTREZGENE, UniProtKB/TrEMBL
1 to 18 of 18 rows