MMP20 (matrix metallopeptidase 20) - Rat Genome Database

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Gene: MMP20 (matrix metallopeptidase 20) Chlorocebus sabaeus
Analyze
Symbol: MMP20
Name: matrix metallopeptidase 20
RGD ID: 18774249
Description: ENCODES a protein that exhibits hydrolase activity (inferred); metal ion binding (inferred); metalloendopeptidase activity (inferred); INVOLVED IN amelogenesis (inferred); collagen catabolic process (inferred); extracellular matrix disassembly (inferred); ASSOCIATED WITH amelogenesis imperfecta hypomaturation type 2A2 (ortholog); amelogenesis imperfecta type 1C (ortholog); asphyxiating thoracic dystrophy (ortholog); FOUND IN extracellular matrix (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: matrix metalloproteinase-20
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1193,946,136 - 93,997,656 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl193,947,582 - 93,996,815 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604331,863,724 - 31,912,227 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MMP20Green Monkeyamelogenesis imperfecta hypomaturation type 2A2  ISOMMP20 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:15744043 more ...
MMP20Green Monkeyamelogenesis imperfecta type 1C  ISOMMP20 (Homo sapiens)8554872ClinVar Annotator: match by term: Amelogenesis Imperfecta and RecessiveClinVar 
MMP20Green Monkeyasphyxiating thoracic dystrophy  ISOMMP20 (Homo sapiens)8554872ClinVar Annotator: match by term: Jeune thoracic dystrophyClinVarPMID:23339108 more ...
MMP20Green Monkeyataxia telangiectasia  ISOMMP20 (Homo sapiens)8554872ClinVar Annotator: match by term: Ataxia-telangiectasia syndromeClinVarPMID:23807571 more ...
MMP20Green Monkeyautosomal dominant intellectual developmental disorder 56  ISOMMP20 (Homo sapiens)8554872ClinVar Annotator: match by term: MENTAL RETARDATION and AUTOSOMAL DOMINANT 56ClinVarPMID:15744043 more ...
MMP20Green Monkeygenetic disease  ISOMMP20 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
MMP20Green Monkeyintellectual disability  ISOMMP20 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
MMP20Green Monkeyschizophrenia  ISOMMP20 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MMP20Green Monkeyamelogenesis imperfecta hypomaturation type 2A2  ISOMMP20 (Homo sapiens)7240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MMP20Green Monkeyamelogenesis involved_inIEAPANTHER:PTN000024064150520179 TreeGrafterGO_REF:0000118
MMP20Green Monkeyamelogenesis acts_upstream_of_or_withinIEAUniProtKB:P57748 and ensembl:ENSMUSP00000034487150520179 EnsemblGO_REF:0000107
MMP20Green Monkeycollagen catabolic process involved_inIEAPANTHER:PTN000024064150520179 TreeGrafterGO_REF:0000118
MMP20Green Monkeyextracellular matrix disassembly acts_upstream_of_or_withinIEAUniProtKB:P57748 and ensembl:ENSMUSP00000034487150520179 EnsemblGO_REF:0000107
MMP20Green Monkeyextracellular matrix organization involved_inIEAPANTHER:PTN000024064150520179 TreeGrafterGO_REF:0000118
MMP20Green Monkeyprotein catabolic process acts_upstream_of_or_withinIEAUniProtKB:P57748 and ensembl:ENSMUSP00000034487150520179 EnsemblGO_REF:0000107
MMP20Green Monkeyproteolysis involved_inIEAInterPro:IPR001818 more ...150520179 InterProGO_REF:0000002
MMP20Green Monkeyproteolysis involved_inIEAUniProtKB-KW:KW-0645150520179 UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MMP20Green Monkeyextracellular matrix located_inIEAInterPro:IPR001818 and InterPro:IPR021158150520179 InterProGO_REF:0000002

Molecular Function
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
MMP20Green Monkeyhydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
MMP20Green Monkeymetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
MMP20Green Monkeymetalloendopeptidase activity enablesIEAInterPro:IPR001818 more ...150520179 InterProGO_REF:0000002
MMP20Green Monkeymetalloendopeptidase activity enablesIEAPANTHER:PTN000024064150520179 TreeGrafterGO_REF:0000118
MMP20Green Monkeymetalloendopeptidase activity enablesIEAUniProtKB:O60882 and ensembl:ENSP00000260228150520179 EnsemblGO_REF:0000107
MMP20Green Monkeymetallopeptidase activity enablesIEAInterPro:IPR006026 more ...150520179 InterProGO_REF:0000002
MMP20Green Monkeymetallopeptidase activity enablesIEAUniProtKB-KW:KW-0482150520179 UniProtGO_REF:0000043
MMP20Green Monkeypeptidase activity enablesIEAUniProtKB-KW:KW-0645150520179 UniProtGO_REF:0000043
MMP20Green Monkeyprotein binding enablesISOUniProtKB:Q992179068941 PMID:18434575BHF-UCLPMID:18434575
MMP20Green Monkeyzinc ion binding enablesIEAInterPro:IPR001818 more ...150520179 InterProGO_REF:0000002
1 to 10 of 10 rows

PMID:22301074   PMID:30032202  



MMP20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1193,946,136 - 93,997,656 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl193,947,582 - 93,996,815 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604331,863,724 - 31,912,227 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MMP20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811102,576,832 - 102,625,332 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11102,576,832 - 102,625,332 (-)EnsemblGRCh38hg38GRCh38
GRCh3711102,447,563 - 102,496,063 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611101,952,776 - 102,001,273 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411101,952,775 - 102,001,273NCBI
Celera1199,609,116 - 99,657,267 (-)NCBICelera
Cytogenetic Map11q22.2NCBI
HuRef1198,374,581 - 98,423,040 (-)NCBIHuRef
CHM1_111102,330,639 - 102,378,769 (-)NCBICHM1_1
T2T-CHM13v2.011102,579,028 - 102,627,492 (-)NCBIT2T-CHM13v2.0
Mmp20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3997,628,232 - 7,674,969 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl97,628,232 - 7,674,980 (+)EnsemblGRCm39 Ensembl
GRCm3897,628,231 - 7,674,968 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl97,628,231 - 7,674,979 (+)EnsemblGRCm38mm10GRCm38
MGSCv3797,628,231 - 7,674,968 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3697,628,240 - 7,674,979 (+)NCBIMGSCv36mm8
Celera95,018,752 - 5,065,648 (+)NCBICelera
Cytogenetic Map9A1NCBI
cM Map92.46NCBI
Mmp20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8813,074,279 - 13,114,894 (+)NCBIGRCr8
mRatBN7.284,789,415 - 4,830,035 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl84,789,415 - 4,830,035 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx88,748,991 - 8,789,552 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.087,046,772 - 7,087,333 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.085,049,092 - 5,089,708 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.085,823,147 - 5,875,555 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl85,833,359 - 5,875,232 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.085,826,487 - 5,877,399 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.484,467,263 - 4,507,865 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.184,467,232 - 4,507,654 (+)NCBI
Celera86,348,869 - 6,389,463 (+)NCBICelera
Cytogenetic Map8q11NCBI
Mmp20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554125,815,450 - 5,869,016 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554125,815,450 - 5,869,016 (-)NCBIChiLan1.0ChiLan1.0
MMP20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29103,369,818 - 103,419,591 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111104,459,433 - 104,507,921 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01197,518,573 - 97,566,881 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111101,011,084 - 101,059,322 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11101,011,084 - 101,059,322 (-)Ensemblpanpan1.1panPan2
MMP20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1529,106,717 - 29,154,628 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl529,106,717 - 29,155,071 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha529,054,854 - 29,102,065 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0529,158,125 - 29,205,612 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl529,158,125 - 29,205,612 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1529,193,037 - 29,240,434 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0529,072,357 - 29,119,832 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0529,247,616 - 29,295,291 (+)NCBIUU_Cfam_GSD_1.0
Mmp20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494786,183,414 - 86,226,115 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365515,310,426 - 5,352,883 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365515,310,426 - 5,352,883 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMP20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl933,261,443 - 33,308,047 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1933,261,448 - 33,308,047 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2937,208,054 - 37,254,669 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Mmp20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624878277,558 - 320,093 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624878277,569 - 320,093 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in MMP20
1073 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
54 15 20 32 32 42 3


RefSeq Transcripts XM_008020664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000001247   ⟹   ENSCSAP00000014830
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl193,947,582 - 93,996,815 (-)Ensembl
RefSeq Acc Id: XM_008020664   ⟹   XP_008018855
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1193,946,136 - 93,997,656 (-)NCBI
Vero_WHO_p1.0NW_02366604331,863,724 - 31,912,227 (+)NCBI
Sequence:
Protein RefSeqs XP_008018855 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014830
  ENSCSAP00000014830.1
RefSeq Acc Id: XP_008018855   ⟸   XM_008020664
- UniProtKB: A0A0D9S1U1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000014830   ⟸   ENSCSAT00000001247



1 to 32 of 32 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000003216 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001247.1 UniProtKB/TrEMBL
Gene3D-CATH 2.110.10.10 UniProtKB/TrEMBL
  3.40.390.10 UniProtKB/TrEMBL
InterPro Hemopexin-like_dom UniProtKB/TrEMBL
  Hemopexin-like_dom_sf UniProtKB/TrEMBL
  Hemopexin-like_repeat UniProtKB/TrEMBL
  M10A_MMP UniProtKB/TrEMBL
  MetalloPept_cat_dom_sf UniProtKB/TrEMBL
  Pept_M10_metallopeptidase UniProtKB/TrEMBL
  Pept_M10A UniProtKB/TrEMBL
  Pept_M10A_Zn_BS UniProtKB/TrEMBL
  Peptidase_Metallo UniProtKB/TrEMBL
  Peptidoglycan-bd-like UniProtKB/TrEMBL
  PGBD-like_sf UniProtKB/TrEMBL
KEGG Report csab:103248341 UniProtKB/TrEMBL
NCBI Gene MMP20 ENTREZGENE
PANTHER MATRIX METALLOPROTEINASE UniProtKB/TrEMBL
  PTHR10201:SF125 UniProtKB/TrEMBL
Pfam Hemopexin UniProtKB/TrEMBL
  Peptidase_M10 UniProtKB/TrEMBL
  PG_binding_1 UniProtKB/TrEMBL
PIRSF Peptidase_M10A_matrix UniProtKB/TrEMBL
PRINTS MATRIXIN UniProtKB/TrEMBL
PROSITE CYSTEINE_SWITCH UniProtKB/TrEMBL
  HEMOPEXIN_2 UniProtKB/TrEMBL
SMART SM00120 UniProtKB/TrEMBL
  ZnMc UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
  SSF47090 UniProtKB/TrEMBL
  SSF50923 UniProtKB/TrEMBL
UniProt A0A0D9S1U1 ENTREZGENE, UniProtKB/TrEMBL
1 to 32 of 32 rows