LOC103233562 (mucosal addressin cell adhesion molecule 1) - Rat Genome Database

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Gene: LOC103233562 (mucosal addressin cell adhesion molecule 1) Chlorocebus sabaeus
Analyze
Symbol: LOC103233562
Name: mucosal addressin cell adhesion molecule 1
RGD ID: 18764508
Description: ENCODES a protein that exhibits integrin binding involved in cell-matrix adhesion (ortholog); INVOLVED IN cell adhesion (ortholog); cell-matrix adhesion (ortholog); heterotypic cell-cell adhesion (ortholog); ASSOCIATED WITH colitis (ortholog); Crohn's disease (ortholog); food allergy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MADCAM1; mucosal vascular addressin cell adhesion molecule 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16222,795 - 235,198 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660818,890,323 - 8,901,527 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC103233562Green MonkeyCrohn's disease  ISORGD:30299068941 RGDPMID:11703369|REF_RGD_ID:2311550
LOC103233562Green Monkeyfood allergy  ISORGD:30299068941 RGDPMID:14670821|REF_RGD_ID:2311549
LOC103233562Green Monkeytype 1 diabetes mellitus  ISORGD:7312999068941 RGDPMID:17827401|PMID:9313747|REF_RGD_ID:2311544|REF_RGD_ID:2311545
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC103233562Green Monkeycolitis  ISORGD:13445919068941CTD Direct Evidence: therapeuticCTDPMID:16917232
LOC103233562Green Monkeyovarian cyst  ISORGD:13445919068941CTD Direct Evidence: marker/mechanismCTDPMID:21239663


Biological Process
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC103233562Green Monkeycell adhesion  ISORGD:30299068941 RGDPMID:12859728|REF_RGD_ID:724402
LOC103233562Green Monkeycell-matrix adhesion involved_inISORGD:13445919068941 PMID:18308860UniProtPMID:18308860
LOC103233562Green Monkeyheterotypic cell-cell adhesion involved_inISORGD:13445919068941 PMID:18308860UniProtPMID:18308860
LOC103233562Green Monkeyintegrin-mediated signaling pathway involved_inISORGD:13445919068941 PMID:23986478UniProtPMID:23986478
LOC103233562Green Monkeykeratinocyte differentiation acts_upstream_of_or_withinISORGD:7312999068941 PMID:12230506MGIPMID:12230506
LOC103233562Green Monkeyleukocyte migration acts_upstream_of_or_withinISORGD:7312999068941 PMID:15484189MGIPMID:15484189
LOC103233562Green Monkeyleukocyte tethering or rolling involved_inISORGD:13445919068941 PMID:18308860UniProtPMID:18308860
LOC103233562Green Monkeypositive regulation of leukocyte migration  ISORGD:30299068941 RGDPMID:14670821|REF_RGD_ID:2311549
LOC103233562Green Monkeyreceptor clustering involved_inISORGD:13445919068941 PMID:23986478UniProtPMID:23986478
1 to 9 of 9 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC103233562Green Monkeyintegrin binding involved in cell-matrix adhesion enablesISORGD:13445919068941 PMID:23986478UniProtPMID:23986478

PMID:22301074   PMID:30032202  



LOC103233562
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16222,795 - 235,198 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660818,890,323 - 8,901,527 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MADCAM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819496,486 - 505,343 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19489,176 - 505,343 (+)EnsemblGRCh38hg38GRCh38
GRCh3719496,486 - 505,343 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619447,490 - 456,343 (+)NCBINCBI36Build 36hg18NCBI36
Build 3419447,489 - 456,342NCBI
Celera19312,275 - 321,128 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef19266,619 - 275,499 (+)NCBIHuRef
CHM1_119496,085 - 504,846 (+)NCBICHM1_1
T2T-CHM13v2.019448,988 - 457,915 (+)NCBIT2T-CHM13v2.0
Madcam1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,500,393 - 79,504,376 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,500,393 - 79,504,371 (+)EnsemblGRCm39 Ensembl
GRCm381079,664,559 - 79,668,542 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,664,559 - 79,668,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,127,319 - 79,131,281 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,067,712 - 79,071,665 (+)NCBIMGSCv36mm8
Celera1080,678,309 - 80,682,271 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Madcam1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,686,920 - 10,690,322 (-)NCBIGRCr8
mRatBN7.2710,036,301 - 10,039,703 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl710,036,301 - 10,039,703 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,917,270 - 12,920,672 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,795,349 - 14,798,751 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,654,653 - 12,658,055 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,918,352 - 12,922,509 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,918,710 - 12,922,112 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0713,087,337 - 13,092,220 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,553,219 - 11,556,621 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1711,553,218 - 11,556,621 (-)NCBI
Celera78,209,542 - 8,212,944 (-)NCBICelera
Cytogenetic Map7q11NCBI
Madcam1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554957,190,009 - 7,194,966 (-)NCBIChiLan1.0ChiLan1.0
MADCAM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2204,824,294 - 4,834,516 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,063,146 - 4,074,931 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v019627,526 - 636,684 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119467,651 - 478,208 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl19468,026 - 477,830 (+)Ensemblpanpan1.1panPan2
MADCAM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,978,189 - 57,981,966 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,978,185 - 57,981,966 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,780,967 - 57,784,744 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,721,763 - 58,725,542 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,721,759 - 58,725,542 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,775,339 - 57,779,116 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02058,255,185 - 58,258,962 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,458,457 - 58,462,234 (-)NCBIUU_Cfam_GSD_1.0
Madcam1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,685,617 - 217,689,136 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936588145,696 - 149,158 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MADCAM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,784,612 - 77,789,067 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,784,610 - 77,789,036 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Madcam1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,954,745 - 7,958,398 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,953,693 - 7,959,518 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in LOC103233562
226 total Variants





RefSeq Transcripts XM_007994513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037994382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_037994382   ⟹   XP_037850310
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660818,890,323 - 8,901,527 (-)NCBI
Protein RefSeqs XP_037850310 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_037850310   ⟸   XM_037994382



Database
Acc Id
Source(s)
NCBI Gene MADCAM1 ENTREZGENE


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103233562  mucosal addressin cell adhesion molecule 1  MADCAM1  mucosal vascular addressin cell adhesion molecule 1  Symbol and/or name change 5135510 APPROVED