SLC22A5 (solute carrier family 22 member 5) - Rat Genome Database

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Gene: SLC22A5 (solute carrier family 22 member 5) Chlorocebus sabaeus
Analyze
Symbol: SLC22A5
Name: solute carrier family 22 member 5
RGD ID: 18759775
Description: ENCODES a protein that exhibits (R)-carnitine transmembrane transporter activity (ortholog); carnitine transmembrane transporter activity (ortholog); quaternary ammonium group transmembrane transporter activity (ortholog); INVOLVED IN (R)-carnitine transport (ortholog); adult heart development (ortholog); carnitine metabolic process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Cardiac Fibrosis (ortholog); cardiomyopathy (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12335,197,909 - 35,224,466 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2335,197,985 - 35,223,137 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603442,719,642 - 42,746,187 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SLC22A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12335,197,909 - 35,224,466 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2335,197,985 - 35,223,137 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603442,719,642 - 42,746,187 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC22A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385132,369,710 - 132,395,612 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5132,369,710 - 132,395,613 (+)EnsemblGRCh38hg38GRCh38
GRCh375131,705,402 - 131,731,304 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365131,733,343 - 131,759,205 (+)NCBINCBI36Build 36hg18NCBI36
Build 345131,733,342 - 131,759,202NCBI
Celera5127,835,468 - 127,861,380 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5126,897,648 - 126,923,551 (+)NCBIHuRef
CHM1_15131,138,142 - 131,164,051 (+)NCBICHM1_1
T2T-CHM13v2.05132,889,604 - 132,915,514 (+)NCBIT2T-CHM13v2.0
Slc22a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391153,755,368 - 53,782,609 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1153,755,368 - 53,782,486 (-)EnsemblGRCm39 Ensembl
GRCm381153,864,542 - 53,891,796 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1153,864,542 - 53,891,660 (-)EnsemblGRCm38mm10GRCm38
MGSCv371153,678,044 - 53,705,205 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361153,707,965 - 53,735,083 (-)NCBIMGSCv36mm8
Celera1158,444,145 - 58,471,434 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.02NCBI
Slc22a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81038,509,072 - 38,536,240 (-)NCBIGRCr8
mRatBN7.21038,008,303 - 38,035,474 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1038,008,311 - 38,035,309 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1042,700,243 - 42,727,196 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01042,190,330 - 42,217,283 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01037,694,042 - 37,720,998 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01039,201,101 - 39,228,090 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1039,201,107 - 39,323,853 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01038,982,882 - 39,009,871 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41039,311,729 - 39,338,718 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11039,325,353 - 39,352,341 (-)NCBI
Celera1037,351,299 - 37,378,255 (-)NCBICelera
Cytogenetic Map10q22NCBI
SLC22A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24127,687,274 - 127,713,176 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15125,826,838 - 125,852,355 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05127,791,984 - 127,817,870 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15133,954,549 - 133,980,410 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5133,954,678 - 133,979,066 (+)Ensemblpanpan1.1panPan2
SLC22A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11120,659,023 - 20,686,359 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1120,598,888 - 20,683,087 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1119,460,877 - 19,488,092 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01121,444,805 - 21,472,095 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1121,384,549 - 21,469,234 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11120,163,703 - 20,190,915 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01120,011,714 - 20,038,930 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01120,653,571 - 20,680,804 (+)NCBIUU_Cfam_GSD_1.0
Slc22a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213115,771,008 - 115,795,734 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366472,773,768 - 2,798,511 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366472,774,063 - 2,798,585 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC22A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2134,660,808 - 134,686,219 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12134,660,741 - 134,847,575 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22140,064,363 - 140,150,841 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Slc22a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473339,698,456 - 39,808,718 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473339,690,958 - 39,727,503 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC22A5
516 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000011911   ⟹   ENSCSAP00000009970
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2335,197,985 - 35,223,137 (+)Ensembl
RefSeq Acc Id: XM_008014372   ⟹   XP_008012563
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12335,197,909 - 35,224,466 (+)NCBI
Vero_WHO_p1.0NW_02366603442,719,642 - 42,746,186 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038008153   ⟹   XP_037864081
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603442,719,642 - 42,746,187 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008012563 (Get FASTA)   NCBI Sequence Viewer  
  XP_037864081 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009970.1
RefSeq Acc Id: XP_008012563   ⟸   XM_008014372
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RMY1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000009970   ⟸   ENSCSAT00000011911
RefSeq Acc Id: XP_037864081   ⟸   XM_038008153
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RMY1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013822 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011911.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Orgcat_transp/SVOP UniProtKB/TrEMBL
  S22A4/5 UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
KEGG Report csab:103244517 UniProtKB/TrEMBL
NCBI Gene SLC22A5 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 22 MEMBER UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A0D9RMY1 ENTREZGENE, UniProtKB/TrEMBL