OTUD1 (OTU deubiquitinase 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: OTUD1 (OTU deubiquitinase 1) Chlorocebus sabaeus
Analyze
Symbol: OTUD1
Name: OTU deubiquitinase 1
RGD ID: 18746743
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); INVOLVED IN protein K63-linked deubiquitination (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: OTU domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1923,203,950 - 23,206,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl923,204,327 - 23,205,766 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605128,968,679 - 28,971,733 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
OTUD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1923,203,950 - 23,206,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl923,204,327 - 23,205,766 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605128,968,679 - 28,971,733 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
OTUD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381023,439,075 - 23,442,377 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1023,439,075 - 23,442,377 (+)EnsemblGRCh38hg38GRCh38
GRCh371023,728,004 - 23,731,306 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361023,767,592 - 23,771,316 (+)NCBINCBI36Build 36hg18NCBI36
Celera1023,416,596 - 23,419,451 (+)NCBICelera
Cytogenetic Map10p12.2NCBI
HuRef1023,388,912 - 23,392,024 (+)NCBIHuRef
CHM1_11023,728,577 - 23,731,689 (+)NCBICHM1_1
T2T-CHM13v2.01023,459,207 - 23,462,509 (+)NCBIT2T-CHM13v2.0
Otud1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39219,662,542 - 19,666,090 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl219,662,563 - 19,665,394 (+)EnsemblGRCm39 Ensembl
GRCm38219,657,731 - 19,661,279 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl219,657,752 - 19,660,583 (+)EnsemblGRCm38mm10GRCm38
MGSCv37219,579,689 - 19,582,217 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36219,573,560 - 19,578,344 (+)NCBIMGSCv36mm8
Celera219,550,304 - 19,552,833 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map213.78NCBI
Otud1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81787,168,248 - 87,171,098 (+)NCBIGRCr8
mRatBN7.21782,259,920 - 82,262,770 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1782,259,840 - 82,262,995 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1785,724,940 - 85,727,790 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01789,560,362 - 89,563,213 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01783,577,116 - 83,579,967 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01786,406,643 - 86,410,670 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1786,408,151 - 86,409,518 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01788,116,903 - 88,120,492 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41793,707,499 - 93,710,025 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1781,524,969 - 81,534,067 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Otud1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554295,588,333 - 5,590,220 (-)NCBIChiLan1.0ChiLan1.0
OTUD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2836,136,514 - 36,139,640 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11036,141,860 - 36,144,966 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01023,612,632 - 23,614,830 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11023,985,437 - 23,988,425 (+)NCBIpanpan1.1PanPan1.1panPan2
OTUD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.129,746,652 - 9,768,868 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha28,439,201 - 8,529,306 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.027,949,157 - 8,039,598 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl28,037,867 - 8,039,357 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.127,315,556 - 7,405,754 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.027,398,871 - 7,489,616 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.027,566,596 - 7,656,887 (-)NCBIUU_Cfam_GSD_1.0
Otud1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934423,202,882 - 23,206,488 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365204,753,989 - 4,757,595 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OTUD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1051,619,680 - 51,621,116 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11051,618,442 - 51,621,309 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21057,272,982 - 57,275,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Otud1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247965,350,716 - 5,351,834 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247965,349,503 - 5,351,828 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 30
Low 16 20 30
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008002513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000019148   ⟹   ENSCSAP00000018570
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl923,204,327 - 23,205,766 (+)Ensembl
RefSeq Acc Id: XM_008002513   ⟹   XP_008000704
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1923,203,950 - 23,206,996 (+)NCBI
Vero_WHO_p1.0NW_02366605128,968,679 - 28,971,733 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008000704 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018570
  ENSCSAP00000018570.1
Reference Protein Sequences
RefSeq Acc Id: XP_008000704   ⟸   XM_008002513
- UniProtKB: A0A0D9SCI1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018570   ⟸   ENSCSAT00000019148


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019058 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019148.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.70.80 UniProtKB/TrEMBL
InterPro OTU_dom UniProtKB/TrEMBL
  OTUD1_OTU UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
KEGG Report csab:103238007 UniProtKB/TrEMBL
NCBI Gene OTUD1 ENTREZGENE
PANTHER OTU DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  OTU DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam OTU UniProtKB/TrEMBL
PROSITE OTU UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A0D9SCI1 ENTREZGENE, UniProtKB/TrEMBL