RAD21L1 (RAD21 cohesin complex component like 1) - Rat Genome Database

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Gene: RAD21L1 (RAD21 cohesin complex component like 1) Chlorocebus sabaeus
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Symbol: RAD21L1
Name: RAD21 cohesin complex component like 1
RGD ID: 18737404
Description: ENCODES a protein that exhibits chromatin binding (inferred); INVOLVED IN double-strand break repair (ortholog); double-strand break repair via homologous recombination (ortholog); fertilization (ortholog); ASSOCIATED WITH spermatogenic failure 3 (ortholog); FOUND IN chromosome (inferred); cohesin complex (inferred); condensed nuclear chromosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: double-strand-break repair protein rad21-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,299,061 - 55,335,200 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl255,307,711 - 55,333,874 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660871,712,827 - 1,741,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAD21L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,299,061 - 55,335,200 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl255,307,711 - 55,333,874 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660871,712,827 - 1,741,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RAD21L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38201,226,044 - 1,255,876 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl201,226,044 - 1,296,421 (+)EnsemblGRCh38hg38GRCh38
GRCh37201,206,688 - 1,236,520 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36201,154,700 - 1,183,101 (+)NCBINCBI36Build 36hg18NCBI36
Celera201,303,090 - 1,331,471 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef201,161,202 - 1,187,291 (+)NCBIHuRef
CHM1_1201,206,765 - 1,235,147 (+)NCBICHM1_1
T2T-CHM13v2.0201,273,334 - 1,303,183 (+)NCBIT2T-CHM13v2.0
Rad21l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392151,486,286 - 151,512,542 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2151,487,324 - 151,510,453 (-)EnsemblGRCm39 Ensembl
GRCm382151,644,366 - 151,670,622 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2151,645,404 - 151,668,533 (-)EnsemblGRCm38mm10GRCm38
MGSCv372151,471,140 - 151,494,269 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362151,336,845 - 151,359,974 (-)NCBIMGSCv36mm8
Celera2157,462,516 - 157,485,682 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.83NCBI
Rad21l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83160,620,500 - 160,648,716 (-)NCBIGRCr8
mRatBN7.23140,160,128 - 140,188,324 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,160,118 - 140,188,298 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03147,163,335 - 147,191,008 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,163,838 - 147,188,929 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03153,516,755 - 153,544,210 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3138,919,326 - 138,946,960 (-)NCBICelera
Cytogenetic Map3q41NCBI
Rad21l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955596457,835 - 486,046 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955596455,932 - 485,853 (+)NCBIChiLan1.0ChiLan1.0
RAD21L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2212,263,920 - 2,296,123 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1202,260,749 - 2,292,952 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0201,385,935 - 1,413,301 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1201,153,378 - 1,179,801 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl201,153,384 - 1,231,383 (+)Ensemblpanpan1.1panPan2
RAD21L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12419,741,398 - 19,771,675 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2419,699,792 - 19,771,679 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2419,395,679 - 19,425,941 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02420,431,965 - 20,462,227 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2420,387,160 - 20,462,205 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12419,709,731 - 19,739,954 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02419,815,102 - 19,845,324 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02420,246,438 - 20,276,321 (-)NCBIUU_Cfam_GSD_1.0
Rad21l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640168,981,343 - 169,006,392 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648517,413,006 - 17,435,951 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648517,413,006 - 17,435,951 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD21L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11734,035,526 - 34,064,215 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21738,591,104 - 38,611,242 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Rad21l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247412,485,471 - 2,542,500 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247412,486,612 - 2,542,452 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000008634   ⟹   ENSCSAP00000006775
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl255,307,711 - 55,333,874 (-)Ensembl
RefSeq Acc Id: XM_037995069   ⟹   XP_037850997
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660871,712,827 - 1,741,923 (-)NCBI
RefSeq Acc Id: XM_037995070   ⟹   XP_037850998
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660871,712,827 - 1,741,923 (-)NCBI
RefSeq Acc Id: XM_037995072   ⟹   XP_037851000
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660871,712,827 - 1,741,884 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037850997 (Get FASTA)   NCBI Sequence Viewer  
  XP_037850998 (Get FASTA)   NCBI Sequence Viewer  
  XP_037851000 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006775.1
Ensembl Acc Id: ENSCSAP00000006775   ⟸   ENSCSAT00000008634
RefSeq Acc Id: XP_037850998   ⟸   XM_037995070
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RDT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037850997   ⟸   XM_037995069
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RDT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037851000   ⟸   XM_037995072
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010561 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008634.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.580 UniProtKB/TrEMBL
InterPro NXP1_M-like UniProtKB/TrEMBL
  Rad21/Rec8-like UniProtKB/TrEMBL
  Rad21/Rec8_C_eu UniProtKB/TrEMBL
  Rad21_Rec8_N UniProtKB/TrEMBL
  ScpA-like_C UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene RAD21L1 ENTREZGENE
PANTHER DOUBLE-STRAND-BREAK REPAIR PROTEIN RAD21-LIKE PROTEIN 1 UniProtKB/TrEMBL
  PTHR12585 UniProtKB/TrEMBL
Pfam Rad21_Rec8 UniProtKB/TrEMBL
  Rad21_Rec8_N UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A0D9RDT6 ENTREZGENE, UniProtKB/TrEMBL