PSMD13 (proteasome 26S subunit, non-ATPase 13) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: PSMD13 (proteasome 26S subunit, non-ATPase 13) Chlorocebus sabaeus
Analyze
Symbol: PSMD13
Name: proteasome 26S subunit, non-ATPase 13
RGD ID: 18734767
Description: ENCODES a protein that exhibits structural molecule activity (inferred); INVOLVED IN meiosis I (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); human immunodeficiency virus infectious disease (ortholog); immunodeficiency 39 (ortholog); FOUND IN cytosol (inferred); nucleus (inferred); proteasome accessory complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 26S proteasome non-ATPase regulatory subunit 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1149,510 - 67,353 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603897,063,307 - 97,081,724 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
PSMD13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1149,510 - 67,353 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603897,063,307 - 97,081,724 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PSMD13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811236,976 - 252,984 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11236,966 - 252,984 (+)EnsemblGRCh38hg38GRCh38
GRCh3711236,976 - 252,984 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611226,808 - 242,984 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411226,976 - 242,981NCBI
Celera11306,187 - 322,313 (-)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef1156,490 - 72,652 (+)NCBIHuRef
CHM1_111235,259 - 251,442 (+)NCBICHM1_1
T2T-CHM13v2.011277,982 - 293,919 (+)NCBIT2T-CHM13v2.0
Psmd13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397140,462,307 - 140,478,555 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7140,461,881 - 140,478,556 (+)EnsemblGRCm39 Ensembl
GRCm387140,882,394 - 140,898,642 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,881,968 - 140,898,643 (+)EnsemblGRCm38mm10GRCm38
MGSCv377148,068,293 - 148,084,541 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367140,733,714 - 140,749,962 (+)NCBIMGSCv36mm8
Celera7140,674,681 - 140,690,962 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map786.09NCBI
Psmd13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81205,394,248 - 205,406,525 (+)NCBIGRCr8
mRatBN7.21195,964,617 - 195,976,895 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1195,964,138 - 195,976,905 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1204,318,943 - 204,331,548 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,445,846 - 211,458,434 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01204,119,697 - 204,132,285 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,636,159 - 213,648,499 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,636,093 - 213,648,488 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01220,561,663 - 220,574,033 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41201,044,403 - 201,057,026 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11201,194,414 - 201,206,667 (+)NCBI
Celera1193,608,457 - 193,620,908 (+)NCBICelera
Cytogenetic Map1q41NCBI
Psmd13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547611,780,791 - 11,794,839 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547611,782,461 - 11,794,839 (-)NCBIChiLan1.0ChiLan1.0
PSMD13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v292,606,169 - 2,622,545 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1111,761,592 - 1,778,058 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011233,691 - 250,184 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111278,353 - 294,685 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11275,304 - 294,685 (+)Ensemblpanpan1.1panPan2
PSMD13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11825,388,212 - 25,401,071 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1825,388,229 - 25,401,070 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1825,038,159 - 25,051,024 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01825,914,884 - 25,927,833 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1825,914,909 - 25,927,831 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11825,482,879 - 25,495,885 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01825,127,656 - 25,140,594 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01825,740,396 - 25,753,256 (+)NCBIUU_Cfam_GSD_1.0
Psmd13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494778,579 - 91,026 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493688878,463 - 91,134 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493688878,468 - 91,026 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMD13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl255,108 - 74,829 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1255,108 - 68,854 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22162,155,822 - 162,169,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Psmd13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476622,187,068 - 22,199,630 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476622,188,064 - 22,199,721 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PSMD13
324 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_037998730   ⟹   XP_037854658
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603897,063,307 - 97,081,724 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037854658 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007397.1
RefSeq Acc Id: XP_037854658   ⟸   XM_037998730
- UniProtKB: A0A0D9RFK8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011249 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009272.1 UniProtKB/TrEMBL
InterPro PCI_dom UniProtKB/TrEMBL
  PSD13_N UniProtKB/TrEMBL
  PSMD13 UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene PSMD13 ENTREZGENE
PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 UniProtKB/TrEMBL
  26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 UniProtKB/TrEMBL
Pfam PCI UniProtKB/TrEMBL
  PSD13_N UniProtKB/TrEMBL
PROSITE PCI UniProtKB/TrEMBL
SMART PINT UniProtKB/TrEMBL
Superfamily-SCOP Winged helix' DNA-binding domain UniProtKB/TrEMBL
UniProt A0A0D9RFK8 ENTREZGENE, UniProtKB/TrEMBL