Psmd13 (proteasome 26S subunit, non-ATPase 13) - Rat Genome Database

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Gene: Psmd13 (proteasome 26S subunit, non-ATPase 13) Chinchilla lanigera
Analyze
Symbol: Psmd13
Name: proteasome 26S subunit, non-ATPase 13
RGD ID: 8889435
Description: INVOLVED IN meiosis I (ortholog); ASSOCIATED WITH genetic disease (ortholog); human immunodeficiency virus infectious disease (ortholog); immunodeficiency 39 (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); proteasome regulatory particle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 26S proteasome non-ATPase regulatory subunit 13; proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547611,780,791 - 11,794,839 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547611,782,461 - 11,794,839 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
meiosis I  (ISO)

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Psmd13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547611,780,791 - 11,794,839 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547611,782,461 - 11,794,839 (-)NCBIChiLan1.0ChiLan1.0
PSMD13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811236,976 - 252,984 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11236,966 - 252,984 (+)EnsemblGRCh38hg38GRCh38
GRCh3711236,976 - 252,984 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611226,808 - 242,984 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411226,976 - 242,981NCBI
Celera11306,187 - 322,313 (-)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef1156,490 - 72,652 (+)NCBIHuRef
CHM1_111235,259 - 251,442 (+)NCBICHM1_1
T2T-CHM13v2.011277,982 - 293,919 (+)NCBIT2T-CHM13v2.0
Psmd13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397140,462,307 - 140,478,555 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7140,461,881 - 140,478,556 (+)EnsemblGRCm39 Ensembl
GRCm387140,882,394 - 140,898,642 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,881,968 - 140,898,643 (+)EnsemblGRCm38mm10GRCm38
MGSCv377148,068,293 - 148,084,541 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367140,733,714 - 140,749,962 (+)NCBIMGSCv36mm8
Celera7140,674,681 - 140,690,962 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map786.09NCBI
Psmd13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81205,394,248 - 205,406,525 (+)NCBIGRCr8
mRatBN7.21195,964,617 - 195,976,895 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1195,964,138 - 195,976,905 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1204,318,943 - 204,331,548 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01211,445,846 - 211,458,434 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01204,119,697 - 204,132,285 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,636,159 - 213,648,499 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,636,093 - 213,648,488 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01220,561,663 - 220,574,033 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41201,044,403 - 201,057,026 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11201,194,414 - 201,206,667 (+)NCBI
Celera1193,608,457 - 193,620,908 (+)NCBICelera
Cytogenetic Map1q41NCBI
PSMD13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v292,606,169 - 2,622,545 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1111,761,592 - 1,778,058 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011233,691 - 250,184 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111278,353 - 294,685 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11275,304 - 294,685 (+)Ensemblpanpan1.1panPan2
PSMD13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11825,388,212 - 25,401,071 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1825,388,229 - 25,401,070 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1825,038,159 - 25,051,024 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01825,914,884 - 25,927,833 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1825,914,909 - 25,927,831 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11825,482,879 - 25,495,885 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01825,127,656 - 25,140,594 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01825,740,396 - 25,753,256 (+)NCBIUU_Cfam_GSD_1.0
Psmd13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494778,579 - 91,026 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493688878,463 - 91,134 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493688878,468 - 91,026 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMD13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl255,108 - 74,829 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1255,108 - 68,854 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22162,155,822 - 162,169,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PSMD13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1149,510 - 67,353 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603897,063,307 - 97,081,724 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmd13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476622,187,068 - 22,199,630 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476622,188,064 - 22,199,721 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000010759   ⟹   ENSCLAP00000010627
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495547611,780,791 - 11,794,839 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000010760   ⟹   ENSCLAP00000010628
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495547611,782,830 - 11,794,762 (-)Ensembl
RefSeq Acc Id: XM_005401886   ⟹   XP_005401943
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495547611,782,461 - 11,794,839 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005401943 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010627
  ENSCLAP00000010627.1
  ENSCLAP00000010628.1
RefSeq Acc Id: XP_005401943   ⟸   XM_005401886
- UniProtKB: A0A8C2V7Y4 (UniProtKB/TrEMBL),   A0A8C2VAP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010628   ⟸   ENSCLAT00000010760
RefSeq Acc Id: ENSCLAP00000010627   ⟸   ENSCLAT00000010759
Protein Domains
PCI


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007334 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010759 ENTREZGENE
  ENSCLAT00000010759.1 UniProtKB/TrEMBL
  ENSCLAT00000010760.1 UniProtKB/TrEMBL
InterPro PCI_dom UniProtKB/TrEMBL
  PSMD13 UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene Psmd13 ENTREZGENE
PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 UniProtKB/TrEMBL
  PTHR10539 UniProtKB/TrEMBL
Pfam PCI UniProtKB/TrEMBL
PROSITE PCI UniProtKB/TrEMBL
SMART PINT UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A8C2V7Y4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VAP3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Psmd13  proteasome 26S subunit, non-ATPase 13    proteasome (prosome, macropain) 26S subunit, non-ATPase, 13  Symbol and/or name change 5135510 APPROVED