CYB561 (cytochrome b561) - Rat Genome Database

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Gene: CYB561 (cytochrome b561) Chlorocebus sabaeus
Analyze
Symbol: CYB561
Name: cytochrome b561
RGD ID: 18734032
Description: ENCODES a protein that exhibits metal ion binding (inferred); oxidoreductase activity (inferred); transmembrane monodehydroascorbate reductase activity (inferred); INVOLVED IN ascorbate homeostasis (inferred); intracellular iron ion homeostasis (inferred); ASSOCIATED WITH Orthostatic Hypotension 2 (ortholog); FOUND IN chromaffin granule membrane (inferred); cytoplasmic vesicle (inferred); lysosomal membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transmembrane ascorbate-dependent reductase CYB561; uncharacterized protein CYB561; uncharacterized protein LOC103243239
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11657,831,350 - 57,850,225 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1657,839,614 - 57,844,989 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607728,448,253 - 28,479,946 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYB561Green MonkeyOrthostatic Hypotension 2  ISORGD:13221998554872ClinVar Annotator: match by term: Orthostatic hypotension 2ClinVarPMID:29343526
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYB561Green MonkeyOrthostatic Hypotension 2  ISORGD:13221997240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYB561Green Monkeyascorbate homeostasis involved_inIEAUniProtKB:Q60720|ensembl:ENSMUSP00000019734150520179 EnsemblGO_REF:0000107
CYB561Green Monkeyintracellular iron ion homeostasis involved_inIEAUniProtKB:Q60720|ensembl:ENSMUSP00000019734150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYB561Green Monkeychromaffin granule membrane located_inIEAUniProtKB:Q60720|ensembl:ENSMUSP00000019734150520179 EnsemblGO_REF:0000107
CYB561Green Monkeychromaffin granule membrane located_inIEAUniProtKB-SubCell:SL-0062150520179 UniProtGO_REF:0000044
CYB561Green Monkeycytoplasmic vesicle located_inIEAUniProtKB-KW:KW-0968150520179 UniProtGO_REF:0000043
CYB561Green Monkeylysosomal membrane located_inIEAPANTHER:PTN000010419150520179 TreeGrafterGO_REF:0000118
CYB561Green Monkeymembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CYB561Green Monkeymetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
CYB561Green Monkeyoxidoreductase activity enablesIEAInterPro:IPR043205150520179 InterProGO_REF:0000002
CYB561Green Monkeyoxidoreductase activity enablesIEAPANTHER:PTN000010419150520179 TreeGrafterGO_REF:0000118
CYB561Green Monkeyprotein binding enablesISOUniProtKB:A0AVG3|UniProtKB:B2RUZ4|UniProtKB:O00767|UniProtKB:O14653|UniProtKB:O14735|UniProtKB:O15155|UniProtKB:O95292|UniProtKB:O95484|UniProtKB:P09601|UniProtKB:P11912|UniProtKB:P17152|UniProtKB:P35372-10|UniProtKB:P52803|UniProtKB:P57105|UniProtKB:Q04941|UniProtKB:Q08426|UniProtKB:Q12981|UniProtKB:Q13277|UniProtKB:Q13323|UniProtKB:Q13520|UniProtKB:Q14318|UniProtKB:Q15125|UniProtKB:Q53FV1|UniProtKB:Q5BJH2-2|UniProtKB:Q6PI48|UniProtKB:Q6PI78|UniProtKB:Q6ZT21|UniProtKB:Q7Z7N9|UniProtKB:Q86W74-2|UniProtKB:Q8N6R1|UniProtKB:Q8NFU1|UniProtKB:Q8TAF8|UniProtKB:Q8TAZ6|UniProtKB:Q8TDT2|UniProtKB:Q8TED1|UniProtKB:Q8WWF3|UniProtKB:Q92838|UniProtKB:Q96CE8|UniProtKB:Q96F15|UniProtKB:Q96HR9-2|UniProtKB:Q96IW7|UniProtKB:Q9BZV2|UniProtKB:Q9NP94|UniProtKB:Q9NQQ7-3|UniProtKB:Q9NSU2-1|UniProtKB:Q9NUH8|UniProtKB:Q9NVC3|UniProtKB:Q9NWH2|UniProtKB:Q9NXF8-2|UniProtKB:Q9NY26|UniProtKB:Q9P0L0|UniProtKB:Q9UBY5|UniProtKB:Q9UJ14|UniProtKB:Q9UKR5|UniProtKB:Q9Y282|UniProtKB:Q9Y3859068941 PMID:32296183IntActPMID:32296183
CYB561Green Monkeyprotein binding enablesISOUniProtKB:Q92838|UniProtKB:Q999429068941 PMID:25416956IntActPMID:25416956
CYB561Green Monkeytransmembrane monodehydroascorbate reductase activity enablesIEAUniProtKB:Q60720|ensembl:ENSMUSP00000019734150520179 EnsemblGO_REF:0000107

PMID:30032202  



CYB561
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11657,831,350 - 57,850,225 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1657,839,614 - 57,844,989 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607728,448,253 - 28,479,946 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CYB561
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381763,432,304 - 63,446,639 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1763,432,304 - 63,446,354 (-)EnsemblGRCh38hg38GRCh38
GRCh371761,509,665 - 61,524,000 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361758,863,397 - 58,877,454 (-)NCBINCBI36Build 36hg18NCBI36
Build 341758,864,160 - 58,877,395NCBI
Celera1755,897,897 - 55,911,954 (-)NCBICelera
Cytogenetic Map17q23.3NCBI
HuRef1756,878,024 - 56,892,081 (-)NCBIHuRef
CHM1_11761,573,809 - 61,587,854 (-)NCBICHM1_1
T2T-CHM13v2.01764,302,512 - 64,316,846 (-)NCBIT2T-CHM13v2.0
Cyb561
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911105,824,528 - 105,844,157 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11105,824,528 - 105,844,162 (-)EnsemblGRCm39 Ensembl
GRCm3811105,933,702 - 105,945,019 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11105,933,702 - 105,953,336 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711105,795,018 - 105,805,461 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611105,749,794 - 105,760,237 (-)NCBIMGSCv36mm8
Celera11117,665,406 - 117,675,846 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1168.81NCBI
Cyb561
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81091,377,866 - 91,388,548 (-)NCBIGRCr8
mRatBN7.21090,878,052 - 90,888,734 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1090,878,054 - 90,884,787 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1095,924,924 - 95,935,491 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01095,388,099 - 95,398,666 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01090,806,834 - 90,817,406 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01094,136,993 - 94,147,567 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1094,136,993 - 94,147,621 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01093,889,861 - 93,896,347 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41095,328,354 - 95,334,603 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11095,342,723 - 95,348,415 (-)NCBI
Celera1089,556,287 - 89,566,846 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
LOC102028532
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554788,362,190 - 8,366,947 (+)NCBIChiLan1.0ChiLan1.0
LOC100993774
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21979,605,600 - 79,622,497 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11784,423,188 - 84,437,289 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01757,513,820 - 57,528,326 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11762,660,598 - 62,674,396 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1762,660,598 - 62,674,396 (-)Ensemblpanpan1.1panPan2
CYB561
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1911,461,738 - 11,474,413 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl911,463,585 - 11,468,282 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha912,422,460 - 12,435,072 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0913,124,956 - 13,137,576 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl913,124,958 - 13,138,143 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1912,069,929 - 12,082,538 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0915,449,455 - 15,462,055 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0915,452,182 - 15,464,811 (+)NCBIUU_Cfam_GSD_1.0
LOC101968635
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560215,063,815 - 15,071,411 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365414,123,202 - 4,132,835 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365414,123,187 - 4,130,819 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYB561
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1215,436,803 - 15,447,100 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11215,435,973 - 15,447,104 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21215,422,536 - 15,433,707 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC101699814
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624849949,533 - 962,404 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624849950,275 - 961,946 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in CYB561
359 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20



Ensembl Acc Id: ENSCSAT00000001891   ⟹   ENSCSAP00000000223
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1657,839,614 - 57,844,989 (+)Ensembl
RefSeq Acc Id: XM_008012176   ⟹   XP_008010367
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11657,831,809 - 57,843,855 (+)NCBI
Vero_WHO_p1.0NW_02366607728,449,304 - 28,463,634 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008012177   ⟹   XP_008010368
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11657,835,808 - 57,843,855 (+)NCBI
Vero_WHO_p1.0NW_02366607728,453,272 - 28,463,634 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008012178   ⟹   XP_008010369
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11657,832,161 - 57,843,855 (+)NCBI
Vero_WHO_p1.0NW_02366607728,449,445 - 28,463,634 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008012179   ⟹   XP_008010370
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11657,831,350 - 57,850,225 (+)NCBI
Vero_WHO_p1.0NW_02366607728,448,257 - 28,471,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008012180   ⟹   XP_008010371
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11657,831,809 - 57,844,780 (+)NCBI
Vero_WHO_p1.0NW_02366607728,449,304 - 28,463,634 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037993759   ⟹   XP_037849687
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607728,448,262 - 28,463,634 (+)NCBI
RefSeq Acc Id: XM_037993760   ⟹   XP_037849688
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607728,448,269 - 28,463,634 (+)NCBI
RefSeq Acc Id: XM_037993761   ⟹   XP_037849689
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607728,448,253 - 28,479,946 (+)NCBI
RefSeq Acc Id: XM_037993762   ⟹   XP_037849690
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607728,448,256 - 28,466,174 (+)NCBI
RefSeq Acc Id: XM_037993763   ⟹   XP_037849691
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607728,453,282 - 28,463,634 (+)NCBI
RefSeq Acc Id: XM_037993764   ⟹   XP_037849692
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607728,449,445 - 28,463,634 (+)NCBI
RefSeq Acc Id: XM_037993765   ⟹   XP_037849693
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607728,448,259 - 28,465,498 (+)NCBI
Protein RefSeqs XP_008010367 (Get FASTA)   NCBI Sequence Viewer  
  XP_008010368 (Get FASTA)   NCBI Sequence Viewer  
  XP_008010369 (Get FASTA)   NCBI Sequence Viewer  
  XP_008010371 (Get FASTA)   NCBI Sequence Viewer  
  XP_037849692 (Get FASTA)   NCBI Sequence Viewer  
  XP_072861242 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000223.1
1 to 5 of 13 rows
1 to 5 of 13 rows
RefSeq Acc Id: XP_008010370   ⟸   XM_008012179
- Peptide Label: isoform X6
RefSeq Acc Id: XP_008010371   ⟸   XM_008012180
- Peptide Label: isoform X7
- UniProtKB: A0A0D9QV34 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008010367   ⟸   XM_008012176
- Peptide Label: isoform X4
RefSeq Acc Id: XP_008010369   ⟸   XM_008012178
- Peptide Label: isoform X4
RefSeq Acc Id: XP_008010368   ⟸   XM_008012177
- Peptide Label: isoform X4



1 to 12 of 12 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000003859 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001891.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1770 UniProtKB/TrEMBL
InterPro CYB561/CYBRD1-like UniProtKB/TrEMBL
  Cyt_b561/ferric_Rdtase_TM UniProtKB/TrEMBL
NCBI Gene CYB561 ENTREZGENE
PANTHER PTHR10106 UniProtKB/TrEMBL
  PTHR10106:SF14 UniProtKB/TrEMBL
Pfam Cytochrom_B561 UniProtKB/TrEMBL
PROSITE CYTOCHROME_B561 UniProtKB/TrEMBL
SMART B561 UniProtKB/TrEMBL
UniProt A0A0D9QV34 ENTREZGENE, UniProtKB/TrEMBL
1 to 12 of 12 rows