Symbol:
MSLN
Name:
mesothelin
RGD ID:
18722795
Description:
INVOLVED IN pancreas development (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); bile duct carcinoma (ortholog); cholangiocarcinoma (ortholog); FOUND IN cell surface (ortholog); extracellular space (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
MSLN (mesothelin) NCBI
Ortholog
Mus musculus (house mouse):
Msln (mesothelin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):
Msln (mesothelin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
MSLN (mesothelin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
LOC611363 (mesothelin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
LOC100524016 (mesothelin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Msln (mesothelin) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Latest Assembly:
ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
MSLN
MSLN Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 16 760,734 - 768,865 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 16 760,734 - 768,865 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 16 810,734 - 818,865 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 16 751,134 - 758,866 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 16 750,797 - 758,866 NCBI Celera 16 1,010,640 - 1,018,740 (+) NCBI Celera Cytogenetic Map 16 p13.3 NCBI HuRef 16 732,923 - 740,842 (+) NCBI HuRef CHM1_1 16 810,267 - 818,805 (+) NCBI CHM1_1 T2T-CHM13v2.0 16 764,710 - 773,383 (+) NCBI T2T-CHM13v2.0
Msln Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 17 25,967,587 - 25,973,352 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 17 25,967,587 - 25,973,352 (-) Ensembl GRCm39 Ensembl GRCm38 17 25,748,613 - 25,754,378 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 17 25,748,613 - 25,754,378 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 17 25,885,558 - 25,891,272 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 17 25,476,213 - 25,481,927 (-) NCBI MGSCv36 mm8 Celera 17 26,280,944 - 26,286,658 (-) NCBI Celera Cytogenetic Map 17 A3.3 NCBI cM Map 17 12.85 NCBI
Msln Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 10 15,276,489 - 15,285,921 (-) NCBI GRCr8 mRatBN7.2 10 14,771,946 - 14,781,382 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 10 14,771,961 - 14,777,643 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 10 19,511,024 - 19,516,683 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 10 18,999,901 - 19,005,560 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 10 14,500,155 - 14,505,826 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 10 15,119,700 - 15,129,129 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 10 15,119,663 - 15,125,408 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 10 14,932,441 - 14,941,855 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 10 15,017,162 - 15,022,823 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 10 15,017,161 - 15,022,823 (-) NCBI Celera 10 14,441,324 - 14,446,985 (-) NCBI Celera Cytogenetic Map 10 q12 NCBI
MSLN Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 18 1,003,978 - 1,010,342 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 16 4,787,991 - 4,794,343 (+) NCBI NHGRI_mPanPan1 PanPan1.1 16 775,433 - 783,449 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 16 777,146 - 783,449 (+) Ensembl panpan1.1 panPan2
LOC611363 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 6 39,827,985 - 39,834,945 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 6 41,092,644 - 41,096,610 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 6 40,171,101 - 40,175,067 (-) NCBI ROS_Cfam_1.0 UMICH_Zoey_3.1 6 39,859,730 - 39,863,696 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 6 39,819,938 - 39,823,904 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 6 40,298,820 - 40,302,786 (-) NCBI UU_Cfam_GSD_1.0
LOC100524016
Msln
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSCSAT00000010224 ⟹ ENSCSAP00000008319
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 Ensembl 5 683,480 - 690,757 (+) Ensembl
RefSeq Acc Id:
XM_007980760 ⟹ XP_007978951
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 5 681,961 - 690,530 (+) NCBI Vero_WHO_p1.0 NW_023666068 30,446,301 - 30,455,279 (-) NCBI
Sequence:
CGGCGGACCCACGGTGCCTCCCTCCCCGGGATCTAGACAGACCATGGCCTTGCCAACGGCTCGACCCCGGTTGGGGTCCTGTGGGACCTCCGCCCTTGGCAGCTTCCTGTTCCTGCTCTTCAGCCTCG
hide sequence
RefSeq Acc Id:
XM_007980778 ⟹ XP_007978969
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 5 681,923 - 690,530 (+) NCBI Vero_WHO_p1.0 NW_023666068 30,446,301 - 30,455,277 (-) NCBI
Sequence:
GGCCACTCCCGTCTGCTGTGGACGCACCGGAGAGCTGCCGGCGGACCCACGGTGCCTCCCTCCC
hide sequence
RefSeq Acc Id:
XM_007980788 ⟹ XP_007978979
Type:
CODING
Position:
Green Monkey Assembly Chr Position (strand) Source ChlSab1.1 5 681,961 - 690,530 (+) NCBI Vero_WHO_p1.0 NW_023666068 30,446,301 - 30,455,280 (-) NCBI
Sequence:
CGGCGGACCCACGGTGCCTCCCTCCCCGGGATCTAGACAGACCATGGCCTTGCCAACGGCTCGACCCCGGTTGGGGTCCTGTGGGACCTCCGCCCTTGGCAGCTTCCTGTTCCTGCTCTTCAGCCTCG
hide sequence
RefSeq Acc Id:
XP_007978969 ⟸ XM_007980778
- Peptide Label:
isoform X2
- UniProtKB:
A0A0D9RI80 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_007978951 ⟸ XM_007980760
- Peptide Label:
isoform X1
- UniProtKB:
A0A0D9RI80 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_007978979 ⟸ XM_007980788
- Peptide Label:
isoform X3
- UniProtKB:
A0A0D9RI80 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSCSAP00000008319 ⟸ ENSCSAT00000010224
