CENPK (centromere protein K) - Rat Genome Database

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Gene: CENPK (centromere protein K) Chlorocebus sabaeus
Analyze
Symbol: CENPK
Name: centromere protein K
RGD ID: 18706551
Description: INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH castration-resistant prostate carcinoma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN chromosome (inferred); chromosome, centromeric region (inferred); inner kinetochore (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1461,712,006 - 61,755,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl461,712,043 - 61,747,178 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604910,354,839 - 10,398,069 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CENPK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1461,712,006 - 61,755,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl461,712,043 - 61,747,178 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604910,354,839 - 10,398,069 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CENPK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38565,495,624 - 65,563,168 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl565,517,766 - 65,563,168 (-)EnsemblGRCh38hg38GRCh38
GRCh37564,812,119 - 64,858,995 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36564,849,350 - 64,894,751 (-)NCBINCBI36Build 36hg18NCBI36
Celera561,812,111 - 61,857,460 (-)NCBICelera
Cytogenetic Map5q12.3ENTREZGENE
HuRef561,769,466 - 61,815,023 (-)NCBIHuRef
CHM1_1564,813,279 - 64,858,667 (-)NCBICHM1_1
T2T-CHM13v2.0566,338,058 - 66,384,928 (-)NCBIT2T-CHM13v2.0
Cenpk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913104,365,474 - 104,386,130 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13104,365,119 - 104,388,900 (+)EnsemblGRCm39 Ensembl
GRCm3813104,228,611 - 104,249,622 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13104,228,611 - 104,252,392 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713105,019,035 - 105,039,697 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613105,349,337 - 105,369,999 (+)NCBIMGSCv36mm8
Celera13108,621,358 - 108,642,051 (+)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1356.42NCBI
Cenpk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8237,094,163 - 37,155,158 (+)NCBIGRCr8
mRatBN7.2235,360,390 - 35,421,372 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl235,360,132 - 35,385,706 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx242,473,469 - 42,498,681 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0240,532,156 - 40,557,370 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0235,388,487 - 35,413,716 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0234,312,766 - 34,373,945 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl234,312,766 - 34,335,776 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0253,441,765 - 53,467,341 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4235,159,157 - 35,182,167 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1235,079,888 - 35,105,102 (+)NCBI
Celera231,336,422 - 31,359,436 (+)NCBICelera
Cytogenetic Map2q13NCBI
Cenpk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554463,531,702 - 3,583,914 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554463,531,702 - 3,583,914 (+)NCBIChiLan1.0ChiLan1.0
CENPK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2448,358,594 - 48,409,512 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1546,512,221 - 46,561,002 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0548,443,491 - 48,490,999 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1550,097,628 - 50,144,126 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl550,105,743 - 50,142,567 (+)Ensemblpanpan1.1panPan2
CENPK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1251,262,475 - 51,300,016 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl251,263,185 - 51,292,425 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha248,192,162 - 48,256,605 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0251,727,375 - 51,792,095 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl251,753,740 - 51,783,767 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1248,787,621 - 48,852,015 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0249,576,772 - 49,641,151 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0250,468,905 - 50,533,342 (-)NCBIUU_Cfam_GSD_1.0
Cenpk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213194,682,894 - 194,746,935 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364803,624,143 - 3,645,884 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364803,621,758 - 3,645,968 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1644,041,490 - 44,080,492 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11644,008,673 - 44,080,565 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21647,320,120 - 47,359,171 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cenpk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248154,311,942 - 4,366,442 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248154,311,929 - 4,427,278 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CENPK
912 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000014047   ⟹   ENSCSAP00000012028
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl461,712,043 - 61,747,178 (-)Ensembl
RefSeq Acc Id: XM_007973904   ⟹   XP_007972095
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1461,712,006 - 61,755,070 (-)NCBI
Vero_WHO_p1.0NW_02366604910,354,839 - 10,398,069 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007973909   ⟹   XP_007972100
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1461,712,006 - 61,755,070 (-)NCBI
Vero_WHO_p1.0NW_02366604910,354,839 - 10,398,069 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007973914   ⟹   XP_007972105
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1461,712,006 - 61,755,082 (-)NCBI
Vero_WHO_p1.0NW_02366604910,355,308 - 10,398,046 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037982248   ⟹   XP_037838176
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604910,355,308 - 10,397,928 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007972095 (Get FASTA)   NCBI Sequence Viewer  
  XP_007972100 (Get FASTA)   NCBI Sequence Viewer  
  XP_007972105 (Get FASTA)   NCBI Sequence Viewer  
  XP_037838176 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012028
  ENSCSAP00000012028.1
RefSeq Acc Id: XP_007972105   ⟸   XM_007973914
- UniProtKB: A0A0D9RTT9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007972100   ⟸   XM_007973909
- UniProtKB: A0A0D9RTT9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007972095   ⟸   XM_007973904
- UniProtKB: A0A0D9RTT9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000012028   ⟸   ENSCSAT00000014047
RefSeq Acc Id: XP_037838176   ⟸   XM_037982248
- UniProtKB: A0A0D9RTT9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015953 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014047.1 UniProtKB/TrEMBL
InterPro Centromere_CenpK UniProtKB/TrEMBL
KEGG Report csab:103222342 UniProtKB/TrEMBL
NCBI Gene CENPK ENTREZGENE
PANTHER CENTROMERE PROTEIN K UniProtKB/TrEMBL
  PTHR14401 UniProtKB/TrEMBL
Pfam CENP-K UniProtKB/TrEMBL
UniProt A0A0D9RTT9 ENTREZGENE, UniProtKB/TrEMBL