NREP (neuronal regeneration related protein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: NREP (neuronal regeneration related protein) Chlorocebus sabaeus
Analyze
Symbol: NREP
Name: neuronal regeneration related protein
RGD ID: 18692448
Description: INVOLVED IN axon regeneration (ortholog); regulation of neuron differentiation (ortholog); regulation of transforming growth factor beta receptor signaling pathway (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103244328; neuronal regeneration-related protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12315,065,565 - 15,314,999 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2315,064,445 - 15,093,992 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603463,154,650 - 63,403,845 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NREP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12315,065,565 - 15,314,999 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2315,064,445 - 15,093,992 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603463,154,650 - 63,403,845 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NREP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385111,728,802 - 111,976,932 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5111,662,621 - 111,997,464 (-)EnsemblGRCh38hg38GRCh38
GRCh375111,064,499 - 111,312,629 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365111,092,892 - 111,120,854 (-)NCBINCBI36Build 36hg18NCBI36
Build 345111,092,891 - 111,120,854NCBI
Celera5107,010,594 - 107,258,308 (-)NCBICelera
Cytogenetic Map5q22.1NCBI
HuRef5106,243,630 - 106,491,590 (-)NCBIHuRef
CHM1_15110,498,248 - 110,745,872 (-)NCBICHM1_1
T2T-CHM13v2.05112,239,135 - 112,487,266 (-)NCBIT2T-CHM13v2.0
Nrep
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391833,570,072 - 33,597,444 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1833,570,072 - 33,597,082 (-)EnsemblGRCm39 Ensembl
GRCm381833,437,019 - 33,464,365 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1833,437,019 - 33,464,029 (-)EnsemblGRCm38mm10GRCm38
MGSCv371833,596,673 - 33,623,683 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361833,561,830 - 33,588,243 (-)NCBIMGSCv36mm8
Celera1833,884,768 - 33,926,480 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.18NCBI
Nrep
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81825,291,219 - 25,320,742 (-)NCBIGRCr8
mRatBN7.21825,017,069 - 25,046,593 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1825,017,083 - 25,046,591 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1825,145,975 - 25,172,066 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01825,908,623 - 25,934,991 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01825,241,653 - 25,267,744 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01826,183,753 - 26,212,796 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1826,185,259 - 26,211,445 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01825,898,561 - 25,927,610 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41825,842,127 - 25,868,219 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11825,868,772 - 25,894,865 (-)NCBI
Celera1824,763,452 - 24,789,542 (-)NCBICelera
Cytogenetic Map18p12NCBI
Nrep
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554183,436,731 - 3,464,667 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554183,435,784 - 3,464,667 (+)NCBIChiLan1.0ChiLan1.0
NREP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24106,985,860 - 107,014,824 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15105,139,515 - 105,387,522 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05107,089,968 - 107,118,919 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15112,891,542 - 113,139,436 (-)NCBIpanpan1.1PanPan1.1panPan2
NREP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13997,142 - 1,025,215 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3997,234 - 1,024,087 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha32,288,883 - 2,426,407 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03735,742 - 872,096 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3843,872 - 872,093 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13723,818 - 861,319 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03720,454 - 857,987 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03884,007 - 1,021,530 (+)NCBIUU_Cfam_GSD_1.0
Nrep
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213155,505,760 - 155,533,814 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365316,077,716 - 6,104,479 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365316,077,691 - 6,105,517 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NREP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2117,838,660 - 117,867,801 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12117,505,851 - 117,867,805 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22122,373,456 - 122,393,187 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Nrep
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474329,529,356 - 29,557,414 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474329,529,356 - 29,557,620 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000013048   ⟹   ENSCSAP00000011061
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2315,064,445 - 15,093,992 (-)Ensembl
RefSeq Acc Id: XM_008014123   ⟹   XP_008012314
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12315,067,064 - 15,301,327 (-)NCBI
Vero_WHO_p1.0NW_02366603463,168,313 - 63,403,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008014124   ⟹   XP_008012315
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12315,065,565 - 15,094,074 (-)NCBI
Vero_WHO_p1.0NW_02366603463,375,296 - 63,403,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008014126   ⟹   XP_008012317
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12315,065,565 - 15,093,901 (-)NCBI
Vero_WHO_p1.0NW_02366603463,375,568 - 63,403,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008014127   ⟹   XP_008012318
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12315,065,565 - 15,094,569 (-)NCBI
Vero_WHO_p1.0NW_02366603463,374,821 - 63,403,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008014128   ⟹   XP_008012319
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12315,065,565 - 15,094,448 (-)NCBI
Vero_WHO_p1.0NW_02366603463,374,937 - 63,403,845 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038009062   ⟹   XP_037864990
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603463,395,455 - 63,403,845 (+)NCBI
RefSeq Acc Id: XM_038009068   ⟹   XP_037864996
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603463,375,758 - 63,403,845 (+)NCBI
RefSeq Acc Id: XR_005244129
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603463,168,508 - 63,403,845 (+)NCBI
RefSeq Acc Id: XR_005244130
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603463,154,650 - 63,403,845 (+)NCBI
RefSeq Acc Id: XR_005244131
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603463,288,712 - 63,403,845 (+)NCBI
RefSeq Acc Id: XP_008012318   ⟸   XM_008014127
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RR22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008012319   ⟸   XM_008014128
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RR22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008012315   ⟸   XM_008014124
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RR22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008012317   ⟸   XM_008014126
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RR22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008012314   ⟸   XM_008014123
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000011061   ⟸   ENSCSAT00000013048
RefSeq Acc Id: XP_037864996   ⟸   XM_038009068
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RR22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037864990   ⟸   XM_038009062
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014952 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013048.1 UniProtKB/TrEMBL
InterPro Neuronal_3.1 UniProtKB/TrEMBL
NCBI Gene NREP ENTREZGENE
PANTHER NEURONAL REGENERATION-RELATED PROTEIN UniProtKB/TrEMBL
  PTHR17102 UniProtKB/TrEMBL
Pfam Alveol-reg_P311 UniProtKB/TrEMBL
UniProt A0A0D9RR22 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 NREP  neuronal regeneration related protein  LOC103244328  neuronal regeneration related protein  Symbol and/or name change 5135510 APPROVED
2020-12-08 LOC103244328  neuronal regeneration related protein  NREP  neuronal regeneration related protein  Symbol and/or name change 5135510 APPROVED