NREP (neuronal regeneration related protein)

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Gene: NREP (neuronal regeneration related protein) Sus scrofa

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Symbol:

NREP

Name:

neuronal regeneration related protein

RGD ID:

14091182

Description:

INVOLVED IN axon regeneration (ortholog); regulation of neuron differentiation (ortholog); regulation of transforming growth factor beta receptor signaling pathway (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); INTERACTS WITH ammonia; deoxynivalenol; resveratrol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

neuronal regeneration-related protein; P311

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	117,838,660 - 117,867,801 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	117,505,851 - 117,867,805 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	122,373,456 - 122,393,187 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

COVID-19 (ISO)

Experimental Liver Cirrhosis (ISO)

familial adenomatous polyposis 1 (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

steatotic liver disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

ammonia (EXP)

deoxynivalenol (EXP)

resveratrol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon regeneration (IBA,ISO)

regulation of neuron differentiation (IBA,ISO)

regulation of transforming growth factor beta receptor signaling pathway (IBA,ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:15679890	PMID:16869957	PMID:30032202

Genomics

Comparative Map Data

NREP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	117,838,660 - 117,867,801 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	117,505,851 - 117,867,805 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	122,373,456 - 122,393,187 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NREP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	111,728,802 - 111,976,932 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	111,662,621 - 111,997,464 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	111,064,499 - 111,312,629 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	111,092,892 - 111,120,854 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	111,092,891 - 111,120,854	NCBI
Celera	5	107,010,594 - 107,258,308 (-)	NCBI		Celera
Cytogenetic Map	5	q22.1	NCBI
HuRef	5	106,243,630 - 106,491,590 (-)	NCBI		HuRef
CHM1_1	5	110,498,248 - 110,745,872 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	112,239,135 - 112,487,266 (-)	NCBI		T2T-CHM13v2.0

Nrep
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	33,570,072 - 33,597,444 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	33,570,072 - 33,597,082 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	33,437,019 - 33,464,365 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	33,437,019 - 33,464,029 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	33,596,673 - 33,623,683 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	33,561,830 - 33,588,243 (-)	NCBI		MGSCv36	mm8
Celera	18	33,884,768 - 33,926,480 (-)	NCBI		Celera
Cytogenetic Map	18	B1	NCBI
cM Map	18	18.18	NCBI

Nrep
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	25,291,219 - 25,320,742 (-)	NCBI		GRCr8
mRatBN7.2	18	25,017,069 - 25,046,593 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	25,017,083 - 25,046,591 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	25,145,975 - 25,172,066 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	25,908,623 - 25,934,991 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	25,241,653 - 25,267,744 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	26,183,753 - 26,212,796 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	26,185,259 - 26,211,445 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	25,898,561 - 25,927,610 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	25,842,127 - 25,868,219 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	25,868,772 - 25,894,865 (-)	NCBI
Celera	18	24,763,452 - 24,789,542 (-)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

Nrep
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	3,436,731 - 3,464,667 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	3,435,784 - 3,464,667 (+)	NCBI	ChiLan1.0	ChiLan1.0

NREP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	106,985,860 - 107,014,824 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	105,139,515 - 105,387,522 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	107,089,968 - 107,118,919 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	112,891,542 - 113,139,436 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

NREP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	997,142 - 1,025,215 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	997,234 - 1,024,087 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	2,288,883 - 2,426,407 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	735,742 - 872,096 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	843,872 - 872,093 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	723,818 - 861,319 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	720,454 - 857,987 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	884,007 - 1,021,530 (+)	NCBI		UU_Cfam_GSD_1.0

Nrep
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	155,505,760 - 155,533,814 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936531	6,077,716 - 6,104,479 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936531	6,077,691 - 6,105,517 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NREP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	15,065,565 - 15,314,999 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	15,064,445 - 15,093,992 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	63,154,650 - 63,403,845 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nrep
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	29,529,356 - 29,557,414 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	29,529,356 - 29,557,620 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in NREP
9356 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021084630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021084631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021084632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021084633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021084634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK240132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY610429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU695210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EF416570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01050574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HF571251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HF571252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HF571253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HF571254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HF571255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HF571256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000041215 ⟹ ENSSSCP00000055288

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	117,838,657 - 117,908,590 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000041288 ⟹ ENSSSCP00000041298

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	117,860,774 - 117,908,590 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000097604 ⟹ ENSSSCP00000076411

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	117,838,660 - 117,867,801 (+)	Ensembl

RefSeq Acc Id:

XM_021084630 ⟹ XP_020940289

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	117,837,875 - 117,843,043 (+)	NCBI

Sequence:

show sequence

TCCTCTTTCCCTCAGATGCCCTCTGCTGCAGGTTTATTATTACAGTACGGGCCGCGCCGCCTCT
CCCTGCGGCCCTGGCCAGCTGCCGGGCTGTGCAGCGCCCTGGCCGCCTTCACGCCTGGCGCGCC
CCCAAACCGCCTCCTCCGCCTCCTTATTTGTCTGAAAAGCAACCGCACGTCGAGGCGGAGAAGC
CTGCCAGGGGCGGGAGAGGCTGGGCCGGGGTGTGTGCGCGCCGCGCTCCCGGGGCGGGGCCAGG
GCAGCGCGCTGATCTGCCGGCCCCTTTGTCCCCCGGGCCCGGGCGGGCGCAGTGGGGGCGGCGC
GCGGGGCACCCGGGGTGCCGGGGACCGGGGCGCGCGCGCGTTGGCTGCTCGCCGACCGGGCCCG
GAGTCGCCGATTCCTGCCGAGTGTAGAGAGGAGAGAGTGAACAGGGAGCGGGGCTTTTGTCTGT
TGCTTGGTCTCCCTGGACTGAAGAGAGGGAGGGTACAAGGCCAAGACTGTTAAGGATTCTCAAA
ATGGTACTTGCTTCACATACATCAATGAGAAGAAAATCCTTCAGAATGAGCTGATGATTTTACT
GAATATTTGAAAAAATAAATTATCTAATTCAATGTCAA

hide sequence

RefSeq Acc Id:

XM_021084631 ⟹ XP_020940290

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	117,837,875 - 117,843,043 (+)	NCBI

Sequence:

show sequence

TCCTCTTTCCCTCAGATGCCCTCTGCTGCAGGTTTATTATTACAGTACGGGCCGCGCCGCCTCT
CCCTGCGGCCCTGGCCAGCTGCCGGGCTGTGCAGCGCCCTGGCCGCCTTCACGCCTGGCGCGCC
CCCAAACCGCCTCCTCCGCCTCCTTATTTGTCTGAAAAGCAACCGCACGTCGAGGCGGAGAAGC
CTGCCAGGGGCGGGAGAGGCTGGGCCGGGGTGTGTGCGCGCCGCGCTCCCGGGGCGGGGCCAGG
GCAGCGCGCTGATCTGCCGGCCCCTTTGTCCCCCGGGCCCGGGCGGGCGCAGTGGGGGCGGCGC
GCGGGGCACCCGGGGTGCCGGGGACCGGGGCGCGCGCGCGTTGGCTGCTCGCCGACCGGGCCCG
GAGTCGCCGATTCCTGCCGAGTGTAGAGAGGAGAGAGTGAACAGGGAGCGGGGCTTTTGTCTGT
TGCTTGGTCTCCCTGGACTGAAGAGAGGGAGGGTACAAGGCCAAGACTGTTAAGGATTCTCAAA
ATGAAGTGAAGATTTATTTCATTCGAACAACAGAAGCCCTTCTGTTCTTTAAGAAGAGTGATGC
GTTGTGACATGCACAGCAGAGGTGGCAGCCGTAGGGCTCAAACAAAGCAATGGGTCTTCTATTA
GAGACAGCCAAGAACTTATCCCCAAAGTAGGAGTCTGTGTGGAACTAATCTAACAGCTATAGGA
TCTGTTATCCTTAAAAGCAATATATACATAGAGCATGGACTTGTATTTTGTTTCACACTGTCTA
TTGTATCTCCAGTATAATTAGTGTTTTGTTGTTGCTGTTGATTTATACCTTCATTTATGAGAGA
CATCTGTTCAGTTTTAGAAGATAAGCATGTTATCCTCTAAATGAAAGTGGTACTGTTTCTGACA
AGCATTATGATCCACAGAGGAGGCAGTTTAGTGTTTGATGACTGATTAAAGAAGTAGATGAGAT
GCACATTAAAAACAGTTGAATAAGTATATTTATCCTCTATGAAAAATTTCCTCTATGGAAATAA
AGTTGAACTGAAAAAAAAATAAAGAAATGTCATGAAAATGTTCAGTTAGGTACAACATGTCCTA
CTGCAGTTGTTTATGCTCTTTCAAACACCTCTCTGCCACTTTAGAGTGTGTGATTTCCAAATTT
AGTTTTCACTTTTTTCTTTTAAACGAGGGTGGAATTTAATGAATCAAAATCGAATCTGATATAC
TTGATGTTTTCTTTGAGAACAATCCAAGTATAAGCTTCCAGGGAGAAAAATGAATCAGAACAAA
TTAAATGAGTTCAGTCTGAATTCTGTTAAGAAGGAAGCTCTTTATTTTTTGTGTTTCCCTCACC
TGTCATTTCAGCAGGTGTGTATCAAAGCACCAAATAAAATAGATCTTGCTTGGTCTTAGGTTGA
TAACAACCAAGTTAAAGAAATTAAGGTAGAAGGCAAGAGGGATGAACAGAAAATTAAACTAATC
AATGGGTTTCGTGCAGATGGTTCCTAACTTTACACTAAATTCCTAATTAGCCATTGTCATATAG
AGTTCTAGGATGGTAATAAAATAAAGTGCTGCAAAGTATTTTTGTTTATTTAATTATCTTTTAC
TGTGAATGGCCACAACACCTGTCTTCTAGCTCTTTATCCCAGAACCTTACCCTCTGTGTCACCA
TAGATAGACCATGAACATTCATGTTTGTTGTAATATGTCAGGTGGCCAGTTTGGTTAAACATCA
ATTTGATCACTGACTCTGCCAAAACTAGCCATATAGATCAGGCTCAACGAATAAATATCCTGTT
TGCGTAGTAGTGAGCGGAGTGAGCTTTGTGGAAGGCAAGTATGTGTGCCAAAGCCAAGAATGAA
AGTTGGAACGATTTGAATGCAGAAGAACAAATTCGAATCATTGTTACATGTTGTTAATTTCTTA
CACTTGTCGTTTATGTATGGTGGCAAAATGAGAAATCACCATTTGTTGCTCTTGGAAGGATTCT
TACTCATGGAAAAAATTCTCACAACTTTTTGGTGATCCTTTCATCAAGATGTCAGTCCCTTTTG
GCACAAGCCCATTGCCTGAAATGAAACCACCGACAGTTATTGTCTGTGGGTGATTCCAAGTAAC
TTTCTAGCAATTCTCTTATTCTGGGAGGTCTGAGCTCTTCAAAGTCTCTTCACATGTTAGTGTT
AAAAAAAAAAAAAAAGTTTCACTTTTTTTTTTTAACTGCTATTAGAGGTATCTTACATCTCCTT
TCCTCCTTTTTGGCAGCAAGTTCCAGTTTTAATCAAGGAAAGAAGAAATTATTTTCTTTCCTTG
ATTAAAACTGGAATTGCTTTGCTGATCTCTGCAACTGGCTTACTTAGACTTAGCCCATGTACAC
TCAAAACTAGTGCTAGAGAAGCAGTAGTCTTAACACCTGGCCACCTCCTGCAAATATATAAAAG
TGTTTTTTCTGTTAAACATATATTTCCATTTACATAATTTAAAACACTGAAGAGATTCTAATTT
AACTCTCTTTGACCTGTTTAGTGAAGGGCTTATTCCAAATACAAATTTATAATCAGCTCATTTC
AGTATTAAGAAATTAACTAGTAGATTCCAGTATTCAAAACAGTGTGATTCAATATTTAGACATT
TGACATACCCTAAAATGATGTTACACAACGATAAATTTGAAGACACTAAAGTATCCTAATGTGC
CTTGCCTTTTGCTTTATCAAATAAGTACAGCTGCTTTGTTAACTCTATGAGGTACTAATCACAT
TGTATTCTGTGTATGGGATCCTTTGGGCACAACTCCAGGGGGCACCATTTACATAGATTACAAT
GCTTCTGGAGTTGTGCATATCAGGAGTACTATGAAAAGTTTTAATGCTGAGAGTGGTTTGCCTT
CTTTTAGTTTTCCAGAATGTTCTTTTTAATAACTTATTCCTCAGCTTTTAAAATGTTCTGGTAA
ACATAGCTTTTTCCAGCCACTCCCCCTCCTTTTTTTTTTTTGTAATTAACAAAATACTGTTAAT
CTGCAGAAATCTTTAGCATTTCTTCGTATTTGGCTTTTTGTTAAATTTTAATTTCTATGACTGT
ATTTTTATGTGGGTCCTTGGTGTTTACGTAGCTGTTTTGTTTTAAAGGTACTTGCTTCACATAC
ATCAATGAGAAGAAAATCCTTCAGAATGAGCTGATGATTTTACTGAATATTTGAAAAAATAAAT
TATCTAATTCAATGTCAA

hide sequence

RefSeq Acc Id:

XM_021084632 ⟹ XP_020940291

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	117,838,466 - 117,867,805 (+)	NCBI

Sequence:

show sequence

AGAGAGAGAGAGAGCGAGGTGTAGAGAGGAGAGAGTGAACAGGGAGCGGGGCTTTTGTCTGTTG
CTTGGTCTCCCTGGACTGAAGAGAGGGAGGGTACAAGGCCAAGACTGTTAAGGATTCTCAAAAT
GGTTTATTACCCAGAGCTTTCTGTCTGGGTCAGTCAAGAACCATTTCCAAACAAGGAAATGGAG
GGAAGGCTTCCTAAGGGAAGACTTCCCATCCCAAAGGAAGTGAACCGCAAGAAGGATGGCGAGA
CCGAGGCTGCCTCCCTGACTCCACTCGGCAGCAATGAAAATGAACTCCACTCCCCAGGAATCAG
TTACCTCCGCTCTTTTTAATCACCTCCATTTGTATTACATATGGTGTATGGGTATTGATGAGGT
CATGGTATCATATATGGGATTTTTTTCTGTGTAAATCATCAAGTATAAGAAGAAACTATGGGAC
TCTGAGCCTTGCTTTAGAGAATTTACAGTGGACAAATAGGTATCATCAAACCAGTTTTTAATCA
TTCTGACTCAAGTGAAAACGCTCAGAATTTCACACTGTGAATCCACGTTTACAACCCTTACAGG
TGGGCCTTCAGGCCTGGTTCGCTACGACGATGTCTTCCACAACTCAAACCCCCAACTGCTCTCA
CACAACCGGTCCACTTCTGCCTTTTCACTCACACAGCTCCCGACTGCTCCTTGCAGAGGCTGAG
AGTCCCCATTTTTTTTTTTTTTTCATTTAGATGTAACAAGCCTAGTAGTTTATGTTCATCAATT
GTCTGTATATCTCTATATTTTATCCATGTACTCTTTTGATGTATAGAAGTAGTTTGAAACTCAT
TGTTTCCTTGTGGTAAGTGACCGAGATGCTGCCACAGGACCTGAGACACTGATGAATGGTGCTA
TTTTGGACTTTCAACATGCTCCTTGGCGAGGTAGCTCTGATGGAGTTATTTTTTATTTTCATGT
TCTAAGAAGGTGTTGGTACTCTGTTTCCCTGAATGTTGTTCTCTAGACTGGATTGACTTGTTTT
CCTTGTGTCTTCAGTGTGGCTTTCTTCTTCAGCGTTGGAGGTTGAGTAAGTGCCACCTCTGAGA
GCAGACACTCGTCTCAGGGGCCGGCTCTCCCAGACACGCAGTCCCTGTAGCGGGAGCAATCACA
AAACTGTAATTTCCTTACCAGATCTCTTCCTTTCGGTCGCCTCGCCTGCCTAACTTAGAGAATG
AAAAGCAATAATTTGACAGGCGTTTTTAGGTGTCTCTTTTGGTTCTTTTCATTTAAAAGAATAT
TTGGGGAAAAAAAGGGCAAACTGGTTTGGGTTTTTTTGTTTTTGTTTTTAATAAATGCCCTCTG
GAAAAAAAAAAAAATCCAAAAACTGACGTCTCCGTAGGAACATGAAAATTACACCTTTCCCAAA
AATAAGGTTGAAAAAATGTCTTGACAAAATTCAAAAAAAAAAAAAAAAAAGGCAGAGCACTCTT
TTTTGGTAGTTCTGATAAGCAAGGTGTAGATTTTACATTTTTGTCCTTGCTCCCAATGAAATGG
ATAAACAAAAATACAATCAGACAATACCATCTACTCATGGAATGTTGTTGTGTTAGCCAGTCTG
AAAGCCCACCTTAATTTTTATATAACTGTCTTTTAGCTCTTCCTTTGACAGGGCAGGCTTCGTT
CTGAACTGTTCCGCTTCTGACTTAACACATCGACGACGCATGCGCTGCACTTCTTCGTTCTCTT
CTTGCTCCCCCATTGGCCTGAGTTTCTTGTGCATCCCCCGCCCCTCCTTTGTTAGAATAGGTAT
ATCCGCTGTGTAAATAGAGCAAGAAAACAGTATTCTGCATCTGTGGCATTTACGTAGAGTTGCA
GTTGTGTACTGCTGAATATGCAGGCTTTTGTAACAATGTGATCTTTACCGATGCACTCACGACA
AGTACCCAATGTATTTTAGCTATTTTAGTAGTATTTGTTCAATAAATATGCAAGCTGTATGGTA
A

hide sequence

RefSeq Acc Id:

XM_021084633 ⟹ XP_020940292

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	117,505,851 - 117,867,805 (+)	NCBI

Sequence:

show sequence

ACTAGTTTTTCCGGCGCCGAAGGAGCTTTTATCAAGCGTGACTTTCTACCCACCCTTCTTCGCA
GTGTTACGGGCACACGGTCACCGCTGAGCTGCGGGTGTAGCCCGAAGGACTTGAGACCTCGTGT
TCTGAGGGAGGACAGAGCTCACCGTCTCCAGCTGAGGAAGAGTCAGCCGTGGTGAGTTATACTC
ACAGAGGAGTTGTAATTTTCGACCTGTCTTAAGATGATCATATACTTCACCTGAAGAATAAAGT
AGAAACAGACTACAAAAGACAGGGACCACTTTAATCTCAAGGCAAAAATGAGGTTTGGATTAAA
ATGACCATGAAGTGTAATTATTAGCAACTGTGAGAGATGTCACCCAGAAGATGAGAAGGATATA
GAGAGGCAAGCTGTTCTTTTCTTCATGGAGGATGCAGAGGAGTATCCAAGGTGGCCCTGTCATG
CTCCTGCCTACCCACCTCACCATGGTTTGTTTCTCCATCCTGAATTTCTGTGTTCCTCAAGGAC
AGTGACTCCCACAAGCCAAGGAGCATTTGGATGTATGAGTGATATATTCTCTGGCCTCTCCCTG
GTTGTATAGGTGTAGAGAGGAGAGAGTGAACAGGGAGCGGGGCTTTTGTCTGTTGCTTGGTCTC
CCTGGACTGAAGAGAGGGAGGGTACAAGGCCAAGACTGTTAAGGATTCTCAAAATGGTTTATTA
CCCAGAGCTTTCTGTCTGGGTCAGTCAAGAACCATTTCCAAACAAGGAAATGGAGGGAAGGCTT
CCTAAGGGAAGACTTCCCATCCCAAAGGAAGTGAACCGCAAGAAGGATGGCGAGACCGAGGCTG
CCTCCCTGACTCCACTCGGCAGCAATGAAAATGAACTCCACTCCCCAGGAATCAGTTACCTCCG
CTCTTTTTAATCACCTCCATTTGTATTACATATGGTGTATGGGTATTGATGAGGTCATGGTATC
ATATATGGGATTTTTTTCTGTGTAAATCATCAAGTATAAGAAGAAACTATGGGACTCTGAGCCT
TGCTTTAGAGAATTTACAGTGGACAAATAGGTATCATCAAACCAGTTTTTAATCATTCTGACTC
AAGTGAAAACGCTCAGAATTTCACACTGTGAATCCACGTTTACAACCCTTACAGGTGGGCCTTC
AGGCCTGGTTCGCTACGACGATGTCTTCCACAACTCAAACCCCCAACTGCTCTCACACAACCGG
TCCACTTCTGCCTTTTCACTCACACAGCTCCCGACTGCTCCTTGCAGAGGCTGAGAGTCCCCAT
TTTTTTTTTTTTTTCATTTAGATGTAACAAGCCTAGTAGTTTATGTTCATCAATTGTCTGTATA
TCTCTATATTTTATCCATGTACTCTTTTGATGTATAGAAGTAGTTTGAAACTCATTGTTTCCTT
GTGGTAAGTGACCGAGATGCTGCCACAGGACCTGAGACACTGATGAATGGTGCTATTTTGGACT
TTCAACATGCTCCTTGGCGAGGTAGCTCTGATGGAGTTATTTTTTATTTTCATGTTCTAAGAAG
GTGTTGGTACTCTGTTTCCCTGAATGTTGTTCTCTAGACTGGATTGACTTGTTTTCCTTGTGTC
TTCAGTGTGGCTTTCTTCTTCAGCGTTGGAGGTTGAGTAAGTGCCACCTCTGAGAGCAGACACT
CGTCTCAGGGGCCGGCTCTCCCAGACACGCAGTCCCTGTAGCGGGAGCAATCACAAAACTGTAA
TTTCCTTACCAGATCTCTTCCTTTCGGTCGCCTCGCCTGCCTAACTTAGAGAATGAAAAGCAAT
AATTTGACAGGCGTTTTTAGGTGTCTCTTTTGGTTCTTTTCATTTAAAAGAATATTTGGGGAAA
AAAAGGGCAAACTGGTTTGGGTTTTTTTGTTTTTGTTTTTAATAAATGCCCTCTGGAAAAAAAA
AAAAATCCAAAAACTGACGTCTCCGTAGGAACATGAAAATTACACCTTTCCCAAAAATAAGGTT
GAAAAAATGTCTTGACAAAATTCAAAAAAAAAAAAAAAAAAGGCAGAGCACTCTTTTTTGGTAG
TTCTGATAAGCAAGGTGTAGATTTTACATTTTTGTCCTTGCTCCCAATGAAATGGATAAACAAA
AATACAATCAGACAATACCATCTACTCATGGAATGTTGTTGTGTTAGCCAGTCTGAAAGCCCAC
CTTAATTTTTATATAACTGTCTTTTAGCTCTTCCTTTGACAGGGCAGGCTTCGTTCTGAACTGT
TCCGCTTCTGACTTAACACATCGACGACGCATGCGCTGCACTTCTTCGTTCTCTTCTTGCTCCC
CCATTGGCCTGAGTTTCTTGTGCATCCCCCGCCCCTCCTTTGTTAGAATAGGTATATCCGCTGT
GTAAATAGAGCAAGAAAACAGTATTCTGCATCTGTGGCATTTACGTAGAGTTGCAGTTGTGTAC
TGCTGAATATGCAGGCTTTTGTAACAATGTGATCTTTACCGATGCACTCACGACAAGTACCCAA
TGTATTTTAGCTATTTTAGTAGTATTTGTTCAATAAATATGCAAGCTGTATGGTAA

hide sequence

RefSeq Acc Id:

XM_021084634 ⟹ XP_020940293

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	117,838,258 - 117,867,805 (+)	NCBI

Sequence:

show sequence

GGAGTCGCCGATTCCTGCCGAGTGTAGAGAGGAGAGAGTGAACAGGGAGCGGGGCTTTTGTCTG
TTGCTTGGTCTCCCTGGACTGAAGAGAGGGAGGGTACAAGGCCAAGACTGTTAAGGATTCTCAA
AATGGTTTATTACCCAGAGCTTTCTGTCTGGGTCAGTCAAGAACCATTTCCAAACAAGGAAATG
GAGGGAAGGCTTCCTAAGGGAAGACTTCCCATCCCAAAGGAAGTGAACCGCAAGAAGGATGGCG
AGACCGAGGCTGCCTCCCTGACTCCACTCGGCAGCAATGAAAATGAACTCCACTCCCCAGGAAT
CAGTTACCTCCGCTCTTTTTAATCACCTCCATTTGTATTACATATGGTGTATGGGTATTGATGA
GGTCATGGTATCATATATGGGATTTTTTTCTGTGTAAATCATCAAGTATAAGAAGAAACTATGG
GACTCTGAGCCTTGCTTTAGAGAATTTACAGTGGACAAATAGGTATCATCAAACCAGTTTTTAA
TCATTCTGACTCAAGTGAAAACGCTCAGAATTTCACACTGTGAATCCACGTTTACAACCCTTAC
AGGTGGGCCTTCAGGCCTGGTTCGCTACGACGATGTCTTCCACAACTCAAACCCCCAACTGCTC
TCACACAACCGGTCCACTTCTGCCTTTTCACTCACACAGCTCCCGACTGCTCCTTGCAGAGGCT
GAGAGTCCCCATTTTTTTTTTTTTTTCATTTAGATGTAACAAGCCTAGTAGTTTATGTTCATCA
ATTGTCTGTATATCTCTATATTTTATCCATGTACTCTTTTGATGTATAGAAGTAGTTTGAAACT
CATTGTTTCCTTGTGGTAAGTGACCGAGATGCTGCCACAGGACCTGAGACACTGATGAATGGTG
CTATTTTGGACTTTCAACATGCTCCTTGGCGAGGTAGCTCTGATGGAGTTATTTTTTATTTTCA
TGTTCTAAGAAGGTGTTGGTACTCTGTTTCCCTGAATGTTGTTCTCTAGACTGGATTGACTTGT
TTTCCTTGTGTCTTCAGTGTGGCTTTCTTCTTCAGCGTTGGAGGTTGAGTAAGTGCCACCTCTG
AGAGCAGACACTCGTCTCAGGGGCCGGCTCTCCCAGACACGCAGTCCCTGTAGCGGGAGCAATC
ACAAAACTGTAATTTCCTTACCAGATCTCTTCCTTTCGGTCGCCTCGCCTGCCTAACTTAGAGA
ATGAAAAGCAATAATTTGACAGGCGTTTTTAGGTGTCTCTTTTGGTTCTTTTCATTTAAAAGAA
TATTTGGGGAAAAAAAGGGCAAACTGGTTTGGGTTTTTTTGTTTTTGTTTTTAATAAATGCCCT
CTGGAAAAAAAAAAAAATCCAAAAACTGACGTCTCCGTAGGAACATGAAAATTACACCTTTCCC
AAAAATAAGGTTGAAAAAATGTCTTGACAAAATTCAAAAAAAAAAAAAAAAAAGGCAGAGCACT
CTTTTTTGGTAGTTCTGATAAGCAAGGTGTAGATTTTACATTTTTGTCCTTGCTCCCAATGAAA
TGGATAAACAAAAATACAATCAGACAATACCATCTACTCATGGAATGTTGTTGTGTTAGCCAGT
CTGAAAGCCCACCTTAATTTTTATATAACTGTCTTTTAGCTCTTCCTTTGACAGGGCAGGCTTC
GTTCTGAACTGTTCCGCTTCTGACTTAACACATCGACGACGCATGCGCTGCACTTCTTCGTTCT
CTTCTTGCTCCCCCATTGGCCTGAGTTTCTTGTGCATCCCCCGCCCCTCCTTTGTTAGAATAGG
TATATCCGCTGTGTAAATAGAGCAAGAAAACAGTATTCTGCATCTGTGGCATTTACGTAGAGTT
GCAGTTGTGTACTGCTGAATATGCAGGCTTTTGTAACAATGTGATCTTTACCGATGCACTCACG
ACAAGTACCCAATGTATTTTAGCTATTTTAGTAGTATTTGTTCAATAAATATGCAAGCTGTATG
GTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020940289	(Get FASTA)	NCBI Sequence Viewer
	XP_020940290	(Get FASTA)	NCBI Sequence Viewer
	XP_020940291	(Get FASTA)	NCBI Sequence Viewer
	XP_020940292	(Get FASTA)	NCBI Sequence Viewer
	XP_020940293	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABN72588	(Get FASTA)	NCBI Sequence Viewer
	CCQ25765	(Get FASTA)	NCBI Sequence Viewer
	CCQ25766	(Get FASTA)	NCBI Sequence Viewer
	CCQ26870	(Get FASTA)	NCBI Sequence Viewer
	CCQ26871	(Get FASTA)	NCBI Sequence Viewer
	CCQ26872	(Get FASTA)	NCBI Sequence Viewer
	CCQ26873	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000076411.1
	ENSSSCP00025020603.1
	ENSSSCP00030038364.1
	ENSSSCP00035010960.1
	ENSSSCP00040039194.1
	ENSSSCP00045032561.1
	ENSSSCP00050016941.1
	ENSSSCP00055029373.1
	ENSSSCP00060028811.1
	ENSSSCP00065005933.1
	ENSSSCP00070022639.1

RefSeq Acc Id:	XP_020940292 ⟸ XM_021084633
- Peptide Label:	isoform X2
- UniProtKB:	A0A4X1TYV1 (UniProtKB/TrEMBL), A3RID9 (UniProtKB/TrEMBL), A0A8D0K068 (UniProtKB/TrEMBL), A0A8D0K4V3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVYYPELSVWVSQEPFPNKEMEGRLPKGRLPIPKEVNRKKDGETEAASLTPLGSNENELHSPGI SYLRSF hide sequence

RefSeq Acc Id:	XP_020940290 ⟸ XM_021084631
- Peptide Label:	isoform X1
- Sequence:	show sequence MPSAAGLLLQYGPRRLSLRPWPAAGLCSALAAFTPGAPPNRLLRLLICLKSNRTSRRRSLPGAG EAGPGCVRAALPGRGQGSALICRPLCPPGPGGRSGGGARGTRGAGDRGARALAARRPGPESPIP AECREERVNRERGFCLLLGLPGLKRGRVQGQDC hide sequence

RefSeq Acc Id:	XP_020940289 ⟸ XM_021084630
- Peptide Label:	isoform X1
- Sequence:	show sequence MPSAAGLLLQYGPRRLSLRPWPAAGLCSALAAFTPGAPPNRLLRLLICLKSNRTSRRRSLPGAG EAGPGCVRAALPGRGQGSALICRPLCPPGPGGRSGGGARGTRGAGDRGARALAARRPGPESPIP AECREERVNRERGFCLLLGLPGLKRGRVQGQDC hide sequence

RefSeq Acc Id:	XP_020940293 ⟸ XM_021084634
- Peptide Label:	isoform X2
- UniProtKB:	A0A4X1TYV1 (UniProtKB/TrEMBL), A3RID9 (UniProtKB/TrEMBL), A0A8D0K068 (UniProtKB/TrEMBL), A0A8D0K4V3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVYYPELSVWVSQEPFPNKEMEGRLPKGRLPIPKEVNRKKDGETEAASLTPLGSNENELHSPGI SYLRSF hide sequence

RefSeq Acc Id:	XP_020940291 ⟸ XM_021084632
- Peptide Label:	isoform X2
- UniProtKB:	A0A4X1TYV1 (UniProtKB/TrEMBL), A3RID9 (UniProtKB/TrEMBL), A0A8D0K068 (UniProtKB/TrEMBL), A0A8D0K4V3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVYYPELSVWVSQEPFPNKEMEGRLPKGRLPIPKEVNRKKDGETEAASLTPLGSNENELHSPGI SYLRSF hide sequence

Ensembl Acc Id:

ENSSSCP00000055288 ⟸ ENSSSCT00000041215

Ensembl Acc Id:

ENSSSCP00000041298 ⟸ ENSSSCT00000041288

Ensembl Acc Id:

ENSSSCP00000076411 ⟸ ENSSSCT00000097604

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000034993	Ensembl
	ENSSSCG00000053658	Ensembl, UniProtKB/TrEMBL
	ENSSSCG00025035201	UniProtKB/TrEMBL
	ENSSSCG00030059763	UniProtKB/TrEMBL
	ENSSSCG00035021818	UniProtKB/TrEMBL
	ENSSSCG00040065330	UniProtKB/TrEMBL
	ENSSSCG00045027544	UniProtKB/TrEMBL
	ENSSSCG00050030517	UniProtKB/TrEMBL
	ENSSSCG00055018862	UniProtKB/TrEMBL
	ENSSSCG00060049515	UniProtKB/TrEMBL
	ENSSSCG00065010977	UniProtKB/TrEMBL
	ENSSSCG00070013917	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000097604.1	UniProtKB/TrEMBL
	ENSSSCT00025048069.1	UniProtKB/TrEMBL
	ENSSSCT00030083531.1	UniProtKB/TrEMBL
	ENSSSCT00035028457.1	UniProtKB/TrEMBL
	ENSSSCT00040089175.1	UniProtKB/TrEMBL
	ENSSSCT00045046906.1	UniProtKB/TrEMBL
	ENSSSCT00050041025.1	UniProtKB/TrEMBL
	ENSSSCT00055036948.1	UniProtKB/TrEMBL
	ENSSSCT00060067255.1	UniProtKB/TrEMBL
	ENSSSCT00065014582.1	UniProtKB/TrEMBL
	ENSSSCT00070027221.1	UniProtKB/TrEMBL
InterPro	Neuronal_3.1	UniProtKB/TrEMBL
NCBI Gene	NREP	ENTREZGENE
PANTHER	NEURONAL REGENERATION-RELATED PROTEIN	UniProtKB/TrEMBL
	PTHR17102	UniProtKB/TrEMBL
Pfam	Alveol-reg_P311	UniProtKB/TrEMBL
UniProt	A0A4X1TYV1	ENTREZGENE
	A0A8D0K068	ENTREZGENE
	A0A8D0K4V3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FAI8_PIG	UniProtKB/TrEMBL
	A3RID9	ENTREZGENE, UniProtKB/TrEMBL
	L8E6R1_PIG	UniProtKB/TrEMBL
	L8EC44_PIG	UniProtKB/TrEMBL
UniProt Secondary	A0A4X1TYV1	UniProtKB/TrEMBL
VGNC ID	VGNC:107161	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD