TCTE1 (t-complex-associated-testis-expressed 1) - Rat Genome Database

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Gene: TCTE1 (t-complex-associated-testis-expressed 1) Chlorocebus sabaeus
Analyze
Symbol: TCTE1
Name: t-complex-associated-testis-expressed 1
RGD ID: 18680092
Description: INVOLVED IN flagellated sperm motility (inferred); microtubule-based movement (inferred); ASSOCIATED WITH male infertility (ortholog); FOUND IN cytoplasm (inferred); cytoskeleton (inferred); sperm flagellum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dynein regulatory complex subunit 5; T-complex-associated testis-expressed protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11727,870,456 - 27,888,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1727,880,057 - 27,888,052 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604444,330,788 - 44,350,987 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TCTE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11727,870,456 - 27,888,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1727,880,057 - 27,888,052 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604444,330,788 - 44,350,987 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TCTE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38644,278,734 - 44,297,698 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl644,278,734 - 44,297,698 (-)EnsemblGRCh38hg38GRCh38
GRCh37644,246,471 - 44,265,435 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36644,355,880 - 44,373,405 (-)NCBINCBI36Build 36hg18NCBI36
Celera645,801,050 - 45,818,612 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,969,874 - 43,987,548 (-)NCBIHuRef
CHM1_1644,251,609 - 44,269,093 (-)NCBICHM1_1
T2T-CHM13v2.0644,112,859 - 44,131,845 (-)NCBIT2T-CHM13v2.0
Tcte1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391745,834,360 - 45,853,605 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1745,834,360 - 45,853,606 (+)EnsemblGRCm39 Ensembl
GRCm381745,523,434 - 45,542,679 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1745,523,434 - 45,542,680 (+)EnsemblGRCm38mm10GRCm38
MGSCv371745,660,383 - 45,679,628 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361744,996,634 - 45,006,261 (+)NCBIMGSCv36mm8
Celera1748,956,144 - 48,975,339 (+)NCBICelera
Cytogenetic Map17B3NCBI
cM Map1722.54NCBI
Tcte1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,961,005 - 22,979,711 (-)NCBIGRCr8
mRatBN7.2915,463,573 - 15,482,258 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl915,463,739 - 15,472,954 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx924,050,175 - 24,059,500 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0929,112,853 - 29,122,178 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0927,413,615 - 27,422,940 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,847,866 - 17,867,276 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,846,364 - 17,866,927 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,736,973 - 16,755,762 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4911,064,068 - 11,073,283 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1911,062,520 - 11,070,536 (-)NCBI
Celera913,206,878 - 13,216,093 (-)NCBICelera
Cytogenetic Map9q12NCBI
Tcte1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,900,301 - 9,908,379 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,900,295 - 9,913,955 (-)NCBIChiLan1.0ChiLan1.0
TCTE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,784,133 - 58,801,738 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1654,652,815 - 54,671,821 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,874,469 - 43,894,227 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1645,157,695 - 45,175,956 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl645,154,203 - 45,175,699 (-)Ensemblpanpan1.1panPan2
TCTE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,686,459 - 12,704,388 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,687,749 - 12,704,687 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,714,686 - 12,732,841 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01213,172,364 - 13,190,526 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1213,173,658 - 13,187,646 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,697,791 - 12,715,939 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,785,240 - 12,803,394 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,879,460 - 12,897,618 (-)NCBIUU_Cfam_GSD_1.0
Tcte1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494648,153,902 - 48,173,653 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647615,795,358 - 15,804,887 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647615,795,358 - 15,807,563 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCTE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl739,275,950 - 39,299,507 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1739,275,595 - 39,288,326 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2745,145,068 - 45,170,453 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Tcte1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475415,573,595 - 15,585,760 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475415,574,833 - 15,586,432 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
59 19 17 19 19 57 17

Sequence


Ensembl Acc Id: ENSCSAT00000010531   ⟹   ENSCSAP00000008624
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1727,880,057 - 27,888,052 (+)Ensembl
RefSeq Acc Id: XM_007972386   ⟹   XP_007970577
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11727,870,456 - 27,888,073 (+)NCBI
Vero_WHO_p1.0NW_02366604444,330,788 - 44,350,987 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007970577 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008624
  ENSCSAP00000008624.1
RefSeq Acc Id: XP_007970577   ⟸   XM_007972386
- UniProtKB: A0A0D9RJ35 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000008624   ⟸   ENSCSAT00000010531


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012432 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010531.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro DRC5 UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103221432 UniProtKB/TrEMBL
NCBI Gene TCTE1 ENTREZGENE
PANTHER DYNEIN REGULATORY COMPLEX SUBUNIT 5 UniProtKB/TrEMBL
  YNEIN REGULATORY COMPLEX SUBUNIT 5 UniProtKB/TrEMBL
Pfam LRR_6 UniProtKB/TrEMBL
SMART LRR_RI UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0A0D9RJ35 ENTREZGENE, UniProtKB/TrEMBL