TCTE1 (t-complex-associated-testis-expressed 1) - Rat Genome Database

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Gene: TCTE1 (t-complex-associated-testis-expressed 1) Sus scrofa
Analyze
Symbol: TCTE1
Name: t-complex-associated-testis-expressed 1
RGD ID: 13881833
Description: INVOLVED IN flagellated sperm motility (inferred); microtubule-based movement (inferred); ASSOCIATED WITH genetic disease (ortholog); male infertility (ortholog); FOUND IN cytoplasm (inferred); cytoskeleton (inferred); sperm flagellum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: T-complex-associated testis-expressed protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl739,275,950 - 39,299,507 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1739,275,595 - 39,288,326 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2745,145,068 - 45,170,453 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TCTE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl739,275,950 - 39,299,507 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1739,275,595 - 39,288,326 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2745,145,068 - 45,170,453 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCTE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38644,278,734 - 44,297,698 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl644,278,734 - 44,297,698 (-)EnsemblGRCh38hg38GRCh38
GRCh37644,246,471 - 44,265,435 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36644,355,880 - 44,373,405 (-)NCBINCBI36Build 36hg18NCBI36
Celera645,801,050 - 45,818,612 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,969,874 - 43,987,548 (-)NCBIHuRef
CHM1_1644,251,609 - 44,269,093 (-)NCBICHM1_1
T2T-CHM13v2.0644,112,859 - 44,131,845 (-)NCBIT2T-CHM13v2.0
Tcte1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391745,834,360 - 45,853,605 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1745,834,360 - 45,853,606 (+)EnsemblGRCm39 Ensembl
GRCm381745,523,434 - 45,542,679 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1745,523,434 - 45,542,680 (+)EnsemblGRCm38mm10GRCm38
MGSCv371745,660,383 - 45,679,628 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361744,996,634 - 45,006,261 (+)NCBIMGSCv36mm8
Celera1748,956,144 - 48,975,339 (+)NCBICelera
Cytogenetic Map17B3NCBI
cM Map1722.54NCBI
Tcte1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,961,005 - 22,979,711 (-)NCBIGRCr8
mRatBN7.2915,463,573 - 15,482,258 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl915,463,739 - 15,472,954 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx924,050,175 - 24,059,500 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0929,112,853 - 29,122,178 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0927,413,615 - 27,422,940 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,847,866 - 17,867,276 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,846,364 - 17,866,927 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,736,973 - 16,755,762 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4911,064,068 - 11,073,283 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1911,062,520 - 11,070,536 (-)NCBI
Celera913,206,878 - 13,216,093 (-)NCBICelera
Cytogenetic Map9q12NCBI
Tcte1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,900,301 - 9,908,379 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,900,295 - 9,913,955 (-)NCBIChiLan1.0ChiLan1.0
TCTE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,784,133 - 58,801,738 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1654,652,815 - 54,671,821 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,874,469 - 43,894,227 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1645,157,695 - 45,175,956 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl645,154,203 - 45,175,699 (-)Ensemblpanpan1.1panPan2
TCTE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,686,459 - 12,704,388 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,687,749 - 12,704,687 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,714,686 - 12,732,841 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01213,172,364 - 13,190,526 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1213,173,658 - 13,187,646 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,697,791 - 12,715,939 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,785,240 - 12,803,394 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,879,460 - 12,897,618 (-)NCBIUU_Cfam_GSD_1.0
Tcte1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494648,153,902 - 48,173,653 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647615,795,358 - 15,804,887 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647615,795,358 - 15,807,563 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCTE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11727,870,456 - 27,888,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1727,880,057 - 27,888,052 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604444,330,788 - 44,350,987 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcte1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475415,573,595 - 15,585,760 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475415,574,833 - 15,586,432 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TCTE1
380 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system reproductive system
High
Medium
Low 5
Below cutoff 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000001905   ⟹   ENSSSCP00000001858
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl739,275,950 - 39,299,507 (-)Ensembl
RefSeq Acc Id: XM_021098795   ⟹   XP_020954454
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1739,275,595 - 39,288,326 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020954454   ⟸   XM_021098795
- UniProtKB: A0A4X1V1G9 (UniProtKB/TrEMBL),   F1RQT8 (UniProtKB/TrEMBL),   A0A8D1ZUT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000001858   ⟸   ENSSSCT00000001905


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001705 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015026828 UniProtKB/TrEMBL
  ENSSSCG00025043625 UniProtKB/TrEMBL
  ENSSSCG00030067304 UniProtKB/TrEMBL
  ENSSSCG00035078201 UniProtKB/TrEMBL
  ENSSSCG00040063325 UniProtKB/TrEMBL
  ENSSSCG00045021175 UniProtKB/TrEMBL
  ENSSSCG00050004175 UniProtKB/TrEMBL
  ENSSSCG00055014981 UniProtKB/TrEMBL
  ENSSSCG00065069170 UniProtKB/TrEMBL
  ENSSSCG00070021848 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001905 ENTREZGENE
  ENSSSCT00000001905.5 UniProtKB/TrEMBL
  ENSSSCT00015035615.1 UniProtKB/TrEMBL
  ENSSSCT00025059154.1 UniProtKB/TrEMBL
  ENSSSCT00030094101.1 UniProtKB/TrEMBL
  ENSSSCT00035106677.1 UniProtKB/TrEMBL
  ENSSSCT00040086382.1 UniProtKB/TrEMBL
  ENSSSCT00045036162.1 UniProtKB/TrEMBL
  ENSSSCT00050005720.1 UniProtKB/TrEMBL
  ENSSSCT00055029554.1 UniProtKB/TrEMBL
  ENSSSCT00065094956.1 UniProtKB/TrEMBL
  ENSSSCT00070043398.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene TCTE1 ENTREZGENE
PANTHER DYNEIN REGULATORY COMPLEX SUBUNIT 5 UniProtKB/TrEMBL
  YNEIN REGULATORY COMPLEX SUBUNIT 5 UniProtKB/TrEMBL
Pfam LRR_6 UniProtKB/TrEMBL
SMART LRR_RI UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0A4X1V1G9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZUT6 ENTREZGENE, UniProtKB/TrEMBL
  F1RQT8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93836 ENTREZGENE