LOC103220344 (spermatogenesis and centriole associated 1 like) - Rat Genome Database

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Gene: LOC103220344 (spermatogenesis and centriole associated 1 like) Chlorocebus sabaeus
Analyze
Symbol: LOC103220344 (Ensembl: SPATC1L)
Name: spermatogenesis and centriole associated 1 like
RGD ID: 18673058
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN actin polymerization or depolymerization (ortholog); positive regulation of cAMP-dependent protein kinase activity (ortholog); positive regulation of cAMP/PKA signal transduction (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); cataract 9 multiple types (ortholog); FOUND IN centrosome (inferred); sperm head-tail coupling apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SPATC1L; speriolin-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,781,950 - 89,805,927 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,782,182 - 89,803,593 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605418,164,576 - 18,188,041 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC103220344
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,781,950 - 89,805,927 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl289,782,182 - 89,803,593 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605418,164,576 - 18,188,041 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SPATC1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382146,161,160 - 46,184,459 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2146,161,148 - 46,184,476 (-)EnsemblGRCh38hg38GRCh38
GRCh372147,581,074 - 47,604,373 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362146,405,498 - 46,428,729 (-)NCBINCBI36Build 36hg18NCBI36
Build 342146,405,497 - 46,428,729NCBI
Celera2132,693,446 - 32,716,761 (-)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2132,963,847 - 32,985,837 (-)NCBIHuRef
CHM1_12147,141,961 - 47,163,904 (-)NCBICHM1_1
T2T-CHM13v2.02144,540,975 - 44,566,185 (-)NCBIT2T-CHM13v2.0
Spatc1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391076,394,180 - 76,406,035 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1076,398,106 - 76,406,035 (+)EnsemblGRCm39 Ensembl
GRCm381076,561,993 - 76,570,201 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1076,562,272 - 76,570,201 (+)EnsemblGRCm38mm10GRCm38
MGSCv371076,025,017 - 76,032,945 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361076,005,988 - 76,013,916 (+)NCBIMGSCv36mm8
Celera1077,606,787 - 77,614,715 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.2NCBI
Spatc1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,073,542 - 12,082,866 (-)NCBIGRCr8
mRatBN7.22012,074,040 - 12,083,873 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,074,047 - 12,083,301 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2012,770,347 - 12,779,565 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02012,131,269 - 12,140,487 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02012,603,047 - 12,612,265 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02012,825,789 - 12,835,007 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2013,164,628 - 13,173,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl2012,825,775 - 12,835,044 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02015,318,495 - 15,327,599 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02014,983,177 - 14,990,480 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42012,488,956 - 12,498,060 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2013,572,304 - 13,581,438 (-)NCBICelera
Cytogenetic Map20p12NCBI
Spatc1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540742,620,679 - 42,629,350 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540742,621,167 - 42,629,350 (-)NCBIChiLan1.0ChiLan1.0
SPATC1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22242,263,138 - 42,285,521 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12137,135,434 - 37,157,840 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02132,506,630 - 32,528,978 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12145,759,213 - 45,781,421 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2145,759,213 - 45,780,611 (-)Ensemblpanpan1.1panPan2
SPATC1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13139,467,365 - 39,475,061 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3139,459,176 - 39,475,074 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3138,695,334 - 38,702,852 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03139,108,633 - 39,116,170 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3139,108,464 - 39,116,046 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13138,970,310 - 38,977,843 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03138,931,010 - 38,938,513 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03139,449,203 - 39,456,714 (-)NCBIUU_Cfam_GSD_1.0
Spatc1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497138,760,737 - 38,779,114 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936778355,775 - 369,346 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936778354,424 - 369,473 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATC1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.213218,494,437 - 218,512,240 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Spatc1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474531,292,684 - 31,302,306 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474531,290,119 - 31,302,261 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
45 16 17 17 17 45 16

Sequence


Ensembl Acc Id: ENSCSAT00000005259   ⟹   ENSCSAP00000003485
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl289,782,182 - 89,803,593 (-)Ensembl
RefSeq Acc Id: XM_037984964   ⟹   XP_037840892
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605418,164,576 - 18,188,041 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037840892 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003485.1
Ensembl Acc Id: ENSCSAP00000003485   ⟸   ENSCSAT00000005259
RefSeq Acc Id: XP_037840892   ⟸   XM_037984964
- UniProtKB: A0A0D9R4E6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007226 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005259.1 UniProtKB/TrEMBL
InterPro SPATC1 UniProtKB/TrEMBL
  Speriolin_C UniProtKB/TrEMBL
  Speriolin_N UniProtKB/TrEMBL
KEGG Report csab:103220344 UniProtKB/TrEMBL
NCBI Gene SPATC1L ENTREZGENE
PANTHER PTHR22192 UniProtKB/TrEMBL
  SPERIOLIN-LIKE PROTEIN UniProtKB/TrEMBL
Pfam Speriolin_C UniProtKB/TrEMBL
  Speriolin_N UniProtKB/TrEMBL
UniProt A0A0D9R4E6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103220344  spermatogenesis and centriole associated 1 like  SPATC1L  spermatogenesis and centriole associated 1 like  Symbol and/or name change 5135510 APPROVED