SPATC1L (spermatogenesis and centriole associated 1 like)

Gene: SPATC1L (spermatogenesis and centriole associated 1 like) Canis lupus familiaris

Analyze

Symbol:

SPATC1L

Name:

spermatogenesis and centriole associated 1 like

RGD ID:

12378786

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN actin polymerization or depolymerization (ortholog); positive regulation of protein kinase A signaling (ortholog); positive regulation of protein phosphorylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); cataract 9 multiple types (ortholog); FOUND IN centrosome (inferred); sperm connecting piece (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C31H21orf56

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	39,467,365 - 39,475,061 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	39,459,176 - 39,475,074 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	38,695,334 - 38,702,852 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	39,108,633 - 39,116,170 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	39,108,464 - 39,116,046 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	38,970,310 - 38,977,843 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	38,931,010 - 38,938,513 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	39,449,203 - 39,456,714 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Axenfeld-Rieger syndrome type 3 (ISO)

cataract 9 multiple types (ISO)

developmental and epileptic encephalopathy 30 (ISO)

genetic disease (ISO)

homocystinuria (ISO)

primary ciliary dyskinesia (ISO)

progressive myoclonus epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin polymerization or depolymerization (IEA,ISO)

positive regulation of protein kinase A signaling (IEA,ISO)

positive regulation of protein phosphorylation (IEA,ISO)

spermatogenesis (IEA,ISO)

Cellular Component

centrosome (IEA)

sperm connecting piece (IEA)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

protein kinase A regulatory subunit binding (IEA)

References

Genomics

Comparative Map Data

SPATC1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	39,467,365 - 39,475,061 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	39,459,176 - 39,475,074 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	38,695,334 - 38,702,852 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	39,108,633 - 39,116,170 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	39,108,464 - 39,116,046 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	38,970,310 - 38,977,843 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	38,931,010 - 38,938,513 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	39,449,203 - 39,456,714 (-)	NCBI		UU_Cfam_GSD_1.0

SPATC1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	46,161,160 - 46,184,459 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	46,161,148 - 46,184,476 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	47,581,074 - 47,604,373 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	46,405,498 - 46,428,729 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	46,405,497 - 46,428,729	NCBI
Celera	21	32,693,446 - 32,716,761 (-)	NCBI		Celera
Cytogenetic Map	21	q22.3	NCBI
HuRef	21	32,963,847 - 32,985,837 (-)	NCBI		HuRef
CHM1_1	21	47,141,961 - 47,163,904 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	44,540,975 - 44,566,185 (-)	NCBI		T2T-CHM13v2.0

Spatc1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	76,394,180 - 76,406,035 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	76,398,106 - 76,406,035 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	76,561,993 - 76,570,201 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	76,562,272 - 76,570,201 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	76,025,017 - 76,032,945 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	76,005,988 - 76,013,916 (+)	NCBI		MGSCv36	mm8
Celera	10	77,606,787 - 77,614,715 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.2	NCBI

Spatc1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	12,073,542 - 12,082,866 (-)	NCBI		GRCr8
mRatBN7.2	20	12,074,040 - 12,083,873 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	12,074,047 - 12,083,301 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	12,770,347 - 12,779,565 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	12,131,269 - 12,140,487 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	12,603,047 - 12,612,265 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	12,825,789 - 12,835,007 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	13,164,628 - 13,173,774 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	20	12,825,775 - 12,835,044 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	15,318,495 - 15,327,599 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	20	14,983,177 - 14,990,480 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	12,488,956 - 12,498,060 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	13,572,304 - 13,581,438 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Spatc1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	42,620,679 - 42,629,350 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	42,621,167 - 42,629,350 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPATC1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	42,263,138 - 42,285,521 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	37,135,434 - 37,157,840 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	32,506,630 - 32,528,978 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	45,759,213 - 45,781,421 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	45,759,213 - 45,780,611 (-)	Ensembl	panpan1.1		panPan2

Spatc1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	38,760,737 - 38,779,114 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936778	355,775 - 369,346 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936778	354,424 - 369,473 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPATC1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	13	218,494,437 - 218,512,240 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103220344
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	89,781,950 - 89,805,927 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	89,782,182 - 89,803,593 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	18,164,576 - 18,188,041 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spatc1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	31,292,684 - 31,302,306 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	31,290,119 - 31,302,261 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SPATC1L
347 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium									5	8
Low					1		1	1	1			2
Below cutoff	3	4	9	2	2	2	5	2	4		4	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022413309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038443729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038443730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038518140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038518142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038581695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038581696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038646099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038646101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_844462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000018952 ⟹ ENSCAFP00000017564

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	31	39,459,176 - 39,475,074 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845043877 ⟹ ENSCAFP00845034386

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	31	39,108,464 - 39,116,046 (-)	Ensembl

RefSeq Acc Id:

XM_022413309 ⟹ XP_022269017

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	31	39,467,365 - 39,475,061 (-)	NCBI
Dog10K_Boxer_Tasha	31	38,695,334 - 38,702,852 (-)	NCBI

Sequence:

show sequence

AGGCTGCGGAAGGCCGGGCGGCTGTGGGGCTCCGGGGCCTGGGCTGTGCCCGAGCGTCTGCGGG
CTCTGGGCTGCCACCTCCATGGGGCCGCAGGCCCGCCCGTGAGCCCCCGCGCCGCGGCCATGGC
CGAGGGGAGCGAGCTGATGAGCAGGCTCATGAGCGAGAACGCGGAGCTCAAGAAGCAGGTGCGC
CTCATGAAGGAGAACCAGATGCTGAAGCGTCTGCTCAGCGAGAGCTGCCAGGAGCGCGGTGGCC
TCGGGAGCCGGGACCTGCTGTTCCCCCGGGCGCCCACGTACCCCGAGGACTGCTCCCCCGGGAG
CGCAGTTGCAGACTTCGGAAGGTTCGCCGGTGCCCCGGAAGCGCCCTGCCAGCTGCCAACGTCC
TCCCTGGAGGAGCTGCTGTGCTCGCACGCCCCCATGTCCCGTGAGGACGACGCGTCCCCCGGCT
GCGCGGCGCCCGCCCCGGTGCCCTTCAAGGCTTTCCTCGGCGCCCCCGAGCTGCACGCGCCCCG
GGGCACCGACCTCAAGCTGTCTCCGCTCCTGAGCCCCCTGCAGGACCCGCTGGCGGACAAGACC
CTGCTGGAGCCCAGGGAGATGGTCCGACCCAAGAAGGTGTGCTTCTCGGAGAGCAGCCTGCCGT
CGGGGGACAGGACCAGGAGGAGCTACTACCTCAACGGGGTGCGGCAGGAGGAGGCTTGGCCCCT
GACTGTCCTTGTCCTGCGCCGGCCTGCCCCGCCGCTCCTCACAGAGATCCAGGGCTGCTGCGGC
GCCCAGAAGGACGGGCGCATCGTCGGGGAGATCGCCTTCCAGCTGGACCGGCGCATCCTGGCCT
ACGTGTTCCCGGGGCTGACCCGCCTGTACGGCTTCACCGTGTCCAACATCCCCGAGAAGATCAA
GCAGACGTGCACCAAGTCCCTGGACGGGTCGGTGGACCAGACGCGGCTGCGGGAGCTGACCCAG
CGCTACGCGGCGCTCACGGCGCGCCTGGAGAGGCTGGGCTACAACCGCGACGTGCACCCGGAGT
TCAGCGAGTTCCTCATCAACACCTACGGCATCCTGCGGCAGCGGCCCGACCTGCGCGCCAGCCC
CCCCCGCAGCCCGGCCGCGCTGCGCAAGCTGCTCATCGACGTGCTGCCCCCCAAGTTCCTGGGC
GACTCGCTGCTGCTGCTCAGCTGCCTGTGCGAGCTCGCCAAGGACGACCGCAAGCCGCTCTTCG
CCTGGTGAGCCGCCCGCAGCGAGCCTCCCTGCGGGGCGGGTGGGGCGGGCGGGGCTGGAGCGGG
TCGCCTGCGCCCCTCCCGCGGCCGCCCAGGAGCGCCCCGGCCCGCCCGGCCCCAGCAGGCGCCC
CCTCGGCCCCCAGCCCGGCCCGGCCCGGCCCGGCCCGGCCGCCCACACCCGCGGCACCATCGAG
TCACTGTATTAAAACCATCCGT

hide sequence

RefSeq Acc Id:

XM_038443729 ⟹ XP_038299657

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	31	39,108,633 - 39,116,170 (-)	NCBI

RefSeq Acc Id:

XM_038443730 ⟹ XP_038299658

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	31	39,108,645 - 39,116,166 (-)	NCBI

RefSeq Acc Id:

XM_038518140 ⟹ XP_038374068

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	31	38,970,310 - 38,977,843 (-)	NCBI

RefSeq Acc Id:

XM_038518142 ⟹ XP_038374070

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	31	38,970,321 - 38,977,839 (-)	NCBI

RefSeq Acc Id:

XM_038581695 ⟹ XP_038437623

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	31	39,449,203 - 39,456,714 (-)	NCBI

RefSeq Acc Id:

XM_038581696 ⟹ XP_038437624

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	31	39,449,211 - 39,456,709 (-)	NCBI

RefSeq Acc Id:

XM_038646099 ⟹ XP_038502027

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	31	38,931,010 - 38,938,513 (-)	NCBI

RefSeq Acc Id:

XM_038646101 ⟹ XP_038502029

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	31	38,931,018 - 38,938,508 (-)	NCBI

RefSeq Acc Id:

XM_844462 ⟹ XP_849555

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	31	39,467,526 - 39,475,058 (-)	NCBI
Dog10K_Boxer_Tasha	31	38,695,346 - 38,702,848 (-)	NCBI

Sequence:

show sequence

CTGCGGAAGGCCGGGCGGCTGTGGGGCTCCGGGGCCTGGGCTGTGCCCGAGCGTCTGCGGGCTC
TGGGCTGCCACCTCCATGGGGCCGCAGGCCCGCCCGTGAGCCCCCGCGCCGCGGCCATGGCCGA
GGGGAGCGAGCTGATGAGCAGGCTCATGAGCGAGAACGCGGAGCTCAAGAAGCAGGTGCGCCTC
ATGAAGGAGAACCAGATGCTGAAGCGTCTGCTCAGCGAGAGCTGCCAGGAGCGCGGTGGCCTCG
GGAGCCGGGACCTGCTGTTCCCCCGGGCGCCCACGTACCCCGAGGACTGCTCCCCCGGGAGCGC
AGTTGCAGACTTCGGAAGGTTCGCCGGTGCCCCGGAAGCGCCCTGCCAGCTGCCAACGTCCTCC
CTGGAGGAGCTGCTGTGCTCGCACGCCCCCATGTCCCGTGAGGACGACGCGTCCCCCGGCTGCG
CGGCGCCCGCCCCGGTGCCCTTCAAGGCTTTCCTCGGCGCCCCCGAGCTGCACGCGCCCCGGGG
CACCGACCTCAAGCTGTCTCCGCTCCTGAGCCCCCTGCAGGACCCGCTGGCGGACAAGACCCTG
CTGGAGCCCAGGGAGATGGTCCGACCCAAGAAGGTGTGCTTCTCGGAGAGCAGCCTGCCGTCGG
GGGACAGGACCAGGAGGAGCTACTACCTCAACGAGATCCAGGGCTGCTGCGGCGCCCAGAAGGA
CGGGCGCATCGTCGGGGAGATCGCCTTCCAGCTGGACCGGCGCATCCTGGCCTACGTGTTCCCG
GGGCTGACCCGCCTGTACGGCTTCACCGTGTCCAACATCCCCGAGAAGATCAAGCAGACGTGCA
CCAAGTCCCTGGACGGGTCGGTGGACCAGACGCGGCTGCGGGAGCTGACCCAGCGCTACGCGGC
GCTCACGGCGCGCCTGGAGAGGCTGGGCTACAACCGCGACGTGCACCCGGAGTTCAGCGAGTTC
CTCATCAACACCTACGGCATCCTGCGGCAGCGGCCCGACCTGCGCGCCAGCCCCCCCCGCAGCC
CGGCCGCGCTGCGCAAGCTGCTCATCGACGTGCTGCCCCCCAAGTTCCTGGGCGACTCGCTGCT
GCTGCTCAGCTGCCTGTGCGAGCTCGCCAAGGACGACCGCAAGCCGCTCTTCGCCTGGTGAGCC
GCCCGCAGCGAGCCTCCCTGCGGGGCGGGTGGGGCGGGCGGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_022269017	(Get FASTA)	NCBI Sequence Viewer
	XP_038299657	(Get FASTA)	NCBI Sequence Viewer
	XP_038299658	(Get FASTA)	NCBI Sequence Viewer
	XP_038374068	(Get FASTA)	NCBI Sequence Viewer
	XP_038374070	(Get FASTA)	NCBI Sequence Viewer
	XP_038437623	(Get FASTA)	NCBI Sequence Viewer
	XP_038437624	(Get FASTA)	NCBI Sequence Viewer
	XP_038502027	(Get FASTA)	NCBI Sequence Viewer
	XP_038502029	(Get FASTA)	NCBI Sequence Viewer
	XP_849555	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000017564.5
	ENSCAFP00030038877.1
	ENSCAFP00040031498.1
	ENSCAFP00845034386
	ENSCAFP00845034386.1

RefSeq Acc Id:	XP_849555 ⟸ XM_844462
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0T7E4 (UniProtKB/TrEMBL), A0A8I3PNX3 (UniProtKB/TrEMBL), A0A8C0L1I2 (UniProtKB/TrEMBL), A0A8C0P9R0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEGSELMSRLMSENAELKKQVRLMKENQMLKRLLSESCQERGGLGSRDLLFPRAPTYPEDCSP GSAVADFGRFAGAPEAPCQLPTSSLEELLCSHAPMSREDDASPGCAAPAPVPFKAFLGAPELHA PRGTDLKLSPLLSPLQDPLADKTLLEPREMVRPKKVCFSESSLPSGDRTRRSYYLNEIQGCCGA QKDGRIVGEIAFQLDRRILAYVFPGLTRLYGFTVSNIPEKIKQTCTKSLDGSVDQTRLRELTQR YAALTARLERLGYNRDVHPEFSEFLINTYGILRQRPDLRASPPRSPAALRKLLIDVLPPKFLGD SLLLLSCLCELAKDDRKPLFAW hide sequence

RefSeq Acc Id:	XP_022269017 ⟸ XM_022413309
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0L1I2 (UniProtKB/TrEMBL), A0A8C0P9R0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEGSELMSRLMSENAELKKQVRLMKENQMLKRLLSESCQERGGLGSRDLLFPRAPTYPEDCSP GSAVADFGRFAGAPEAPCQLPTSSLEELLCSHAPMSREDDASPGCAAPAPVPFKAFLGAPELHA PRGTDLKLSPLLSPLQDPLADKTLLEPREMVRPKKVCFSESSLPSGDRTRRSYYLNGVRQEEAW PLTVLVLRRPAPPLLTEIQGCCGAQKDGRIVGEIAFQLDRRILAYVFPGLTRLYGFTVSNIPEK IKQTCTKSLDGSVDQTRLRELTQRYAALTARLERLGYNRDVHPEFSEFLINTYGILRQRPDLRA SPPRSPAALRKLLIDVLPPKFLGDSLLLLSCLCELAKDDRKPLFAW hide sequence

RefSeq Acc Id:

ENSCAFP00000017564 ⟸ ENSCAFT00000018952

RefSeq Acc Id:	XP_038374068 ⟸ XM_038518140
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038374070 ⟸ XM_038518142
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038502027 ⟸ XM_038646099
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038502029 ⟸ XM_038646101
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038299657 ⟸ XM_038443729
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0L1I2 (UniProtKB/TrEMBL), A0A8C0P9R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038299658 ⟸ XM_038443730
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0T7E4 (UniProtKB/TrEMBL), A0A8I3PNX3 (UniProtKB/TrEMBL), A0A8C0L1I2 (UniProtKB/TrEMBL), A0A8C0P9R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038437623 ⟸ XM_038581695
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0L1I2 (UniProtKB/TrEMBL), A0A8C0P9R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038437624 ⟸ XM_038581696
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0L1I2 (UniProtKB/TrEMBL), A0A8C0P9R0 (UniProtKB/TrEMBL), A0A8C0T7E4 (UniProtKB/TrEMBL), A0A8I3PNX3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845034386 ⟸ ENSCAFT00845043877

Protein Domains

Speriolin C-terminal Speriolin N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000011938	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030024208	UniProtKB/TrEMBL
	ENSCAFG00040019525	UniProtKB/TrEMBL
	ENSCAFG00845024849	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000018952.5	UniProtKB/TrEMBL
	ENSCAFT00030044540.1	UniProtKB/TrEMBL
	ENSCAFT00040036172.1	UniProtKB/TrEMBL
	ENSCAFT00845043877	ENTREZGENE
	ENSCAFT00845043877.1	UniProtKB/TrEMBL
InterPro	SPATC1	UniProtKB/TrEMBL
	Speriolin_C	UniProtKB/TrEMBL
	Speriolin_N	UniProtKB/TrEMBL
NCBI Gene	SPATC1L	ENTREZGENE
PANTHER	PTHR22192	UniProtKB/TrEMBL
	SPERIOLIN-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	Speriolin_C	UniProtKB/TrEMBL
	Speriolin_N	UniProtKB/TrEMBL
UniProt	A0A8C0L1I2	ENTREZGENE
	A0A8C0P9R0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0T7E4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PNX3	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:46720	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar