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Gene: CD6 (CD6 molecule) Chlorocebus sabaeus

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Symbol:

CD6

Name:

CD6 molecule

RGD ID:

18667800

Description:

ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN positive regulation of protein phosphorylation (ortholog); ASSOCIATED WITH Breast Cancer, Familial (ortholog); colon adenocarcinoma (ortholog); esophageal cancer (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

T-cell differentiation antigen CD6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CD6 (CD6 molecule)	NCBI	Ortholog
Mus musculus (house mouse):	Cd6 (CD6 antigen)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cd6 (Cd6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cd6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CD6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CD6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cd6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CD6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cd6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cd6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	1	12,813,245 - 12,862,464 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666038	110,196,562 - 110,245,906 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	1	12,827,238 - 12,878,304 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	12,828,285 - 12,877,704 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

colon adenocarcinoma (ISO)

esophageal cancer (ISO)

multiple sclerosis (ISO)

nonpapillary renal cell carcinoma (ISO)

ovarian serous cystadenocarcinoma (ISO)

stomach cancer (ISO)

Thyroid Carcinoma, Nonmedullary 1 (ISO)

uterine corpus endometrial carcinoma (ISO)

uveal melanoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acute inflammatory response to antigenic stimulus (IEA)

heterophilic cell-cell adhesion (IEA)

immunological synapse formation (IEA)

lipopolysaccharide-mediated signaling pathway (IEA)

positive regulation of cytokine production involved in inflammatory response (IEA)

positive regulation of protein phosphorylation (ISO)

positive regulation of T cell proliferation (IEA)

response to lipopolysaccharide (IEA)

Cellular Component

cell surface (ISO)

extracellular region (ISO)

immunological synapse (IEA)

membrane (IEA)

plasma membrane (IEA)

T cell receptor complex (IEA)

Molecular Function

identical protein binding (IEA)

lipopolysaccharide binding (IEA)

lipoteichoic acid binding (IEA)

protein binding (ISO)

protein kinase binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

CD6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	1	12,813,245 - 12,862,464 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666038	110,196,562 - 110,245,906 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	1	12,827,238 - 12,878,304 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	12,828,285 - 12,877,704 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

CD6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	60,971,680 - 61,020,377 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	60,971,651 - 61,020,377 (+)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	11	60,739,152 - 60,787,849 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	60,495,750 - 60,544,425 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	60,495,749 - 60,544,422	NCBI
Celera	11	58,099,987 - 58,148,914 (+)	NCBI		Celera
Cytogenetic Map	11	q12.2	NCBI
HuRef	11	57,085,244 - 57,134,039 (+)	NCBI		HuRef
CHM1_1	11	60,605,326 - 60,654,240 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	60,922,811 - 60,971,572 (+)	NCBI		T2T-CHM13v2.0

Cd6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	10,766,703 - 10,807,427 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	10,766,705 - 10,807,422 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	10,789,339 - 10,830,062 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	10,789,341 - 10,830,058 (-)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	19	10,863,829 - 10,904,548 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	10,856,386 - 10,897,098 (-)	NCBI		MGSCv36	mm8
Celera	19	11,482,305 - 11,523,180 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	7.16	NCBI

Cd6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	216,867,767 - 216,906,642 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	216,867,771 - 216,879,432 (-)	Ensembl				GRCr8
mRatBN7.2	1	207,442,873 - 207,481,703 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	207,442,877 - 207,481,634 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	215,817,721 - 215,856,474 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	222,876,916 - 222,915,651 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	215,572,103 - 215,610,862 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	1	216,228,371 - 216,267,081 (-)	NCBI
Lyon_Normotensive	1	221,137,466 - 221,176,175 (-)	NCBI
Lyon_Hypertensive	1	217,891,837 - 217,930,544 (-)	NCBI
F344_StmMcwi	1	216,118,620 - 216,157,331 (-)	NCBI
Rnor_6.0	1	226,848,399 - 226,887,259 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	226,848,403 - 226,887,156 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	1	233,913,073 - 233,951,869 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	213,290,835 - 213,329,594 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	204,934,769 - 204,973,456 (-)	NCBI		Celera
RGSC_v3.1	1	213,449,267 - 213,487,963 (-)	NCBI
Cytogenetic Map	1	q43	NCBI

Cd6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955511	5,592,176 - 5,617,421 (+)	NCBI	ChiLan1.0	ChiLan1.0

CD6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	62,140,849 - 62,189,584 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	63,219,722 - 63,233,664 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	56,269,585 - 56,283,516 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	59,691,762 - 59,723,974 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	59,675,221 - 59,722,916 (+)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

CD6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	55,296,116 - 55,336,014 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	55,296,986 - 55,335,880 (-)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	53,869,334 - 53,909,224 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	56,344,791 - 56,384,690 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	56,344,791 - 56,384,568 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	55,402,485 - 55,442,306 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	55,023,721 - 55,063,783 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	55,905,105 - 55,944,991 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	4	11,687,320 - 11,724,737 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024404947	11,818,710 - 11,829,849 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	1,932,668 - 1,969,126 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	1,932,596 - 1,943,671 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CD6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	10,738,471 - 10,785,516 (-)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	2	10,739,560 - 10,785,548 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	10,240,961 - 10,329,820 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Cd6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624926	325,327 - 333,405 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624926	324,828 - 333,246 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl

Cd6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	10,273,851 - 10,311,207 (-)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Variants

Variants in CD6
1517 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007996500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007996509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007996518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073015761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073015763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JBLKOC010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000004308 ⟹ ENSCSAP00000002567

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	1	12,828,285 - 12,877,704 (-)	Ensembl

RefSeq Acc Id:

XM_007996500 ⟹ XP_007994691

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
mChlSab1.0.hap1	1	12,813,245 - 12,862,460 (-)	NCBI
Vero_WHO_p1.0	NW_023666038	110,196,562 - 110,245,906 (-)	NCBI
ChlSab1.1	1	12,827,238 - 12,878,300 (-)	NCBI

Sequence:

show sequence

CCTGTAGAAGGACTTGTGGGATGGTCCTCTCTCAGGCCCTTCCCAATTTATGTTTCTCTGAGGG
GAGACTTAGGCTCTTATCTCCAAAAGTGCATTAAGACCACACCCTCCTTCCCAACCACCATTGC
CTCTAAGGTTAAGATAAAACTCAGGATTTAATCCATGAGAGCCAAATCGCGCAGACCGGGACAG
GCAATGACAGGACCCAGAATGACAGGGTCATTCCCTCCCTCTTCCAATAGGTACTGATTGAGCA
GCTACTACACTATCAATTTTTTCCTCTGGGCCACCAGAAATGAGGTATGGCCCCTCCACTTGCC
TTCTTAGAAGCCCCTCGGGGAAGTGTGTCTGCATGGATGCGTGTGCATGCGTGTGTCTGGCTCC
GTGACTCTTGGGGTGCCGCCTGGATGGGTGGGCTCCCAGCACCGGCAGCTGGGGCTCTCCCCAC
CAGCCCCTGTACCAGCAGCCCAGCTTCCTGCAGACCAAAACCACAAGCAGAACAGGGAGGCGTG
AGACACTCACAGGTTGGGTTTGATCGCATGCGTGTCGGAGGGGAGAGAGCAGCGAGACACAGGA
ACAGGAACAGCGAAGGGCAGAGCAGACCTGCGCCAGGGGCGCACAACGGCCGTGTCCACCTCCC
GGCCCCAAAATGGTGCTTCCCACAGGCAGCCACGTGTAGCAGCCAGAGACAGCTCCAGACATGT
GGCTCTTCTTCGGGATCGCTGGATTGCTGACAGCAGCCCTCTCAGGTCATCTGTCTCCAGCCCC
ACCTGACCAGCTCAACGCCAGCAGTGCAGAGAGCGAGGTCTGGGAGCCAGGGCAGCGGCTTCCG
GTCCGTCTGACGAACGGGAGCAGCAGCTGCAGCGGGACGGTGGAGGTCCGGCTCAAGGCGTCCT
GGGAGCCTGCGTGCTGGGCGCTCTGGGACAGCCGCGCCGCAGAGGCCGTGTGCCGCGCACTGGA
CTGCGGCGGGGCGGAGGCATCCACCCTGCTCCCCCGGCCGACCCCGGAGCTGCCTCCCCCGCCG
GCAGCTGGGAACACAAGCGCTGCAGCTAACGCCACTCTGGCCGGGGCGCCCGCCCTCCTGTGCA
GCGGCACCGAGTGGCAGCTCTGCGAGGTGGTGGAGCACGCGTGCCGCAGCGACGGGAGGCGGGC
CCGCGTCATCTGTGCAGAGAACCGCGCGCTGCGCCTGGTGGACGGTGGCAGCGCCTGCGCCGGC
CGCGTGGAGATGCTGGAGCATGGCGAGTGGGGATCGGTGTGTGATGACACTTGGGACCTGGAGG
ACGCCCACGTGGTGTGCAGGCAACTGGGCTGCGGCTGGGCAGTCCAGGCCCTGCCCGGCTTGCA
CTTCACGCCGGGCCACGGACCTATCCACCGGGACCAGGTGAACTGCTCCGGGGCCGAAGCTTAC
CTGTGGGACTGCCCGGGGCTGCCAGGACAGCACTACTGCGGCCACAAAGAGGACGCGGGCGTGG
TGTGCTCAGAGCACCAGTCCTGGCGCCTGACCGGGGGCGCTGACGCCTGCGAGGGGCAGGTGGA
GGTACACTTCCGAGGGGTCTGGAACACAGTGTGTGACAGTGAGTGGTACGCATCAGAGGCCAAG
GTGCTCTGCCAGTCCTTGGGCTGCGGAACCGTGATCGAGAGGCCCAAGGGGCTGCCCCACTCCT
TGTCCGGCAGGATGTACTACTCATGCAACGGGGAGGAGCTCACCCTCTCCAACTGCTCCTGGCG
GTTCAACAACTCCAACCTCTGCAGCCAGTCGCTGGCAGCCAGGGTCCTCTGCTCAGCTTCCCGG
AGTTTGCACAATCTGTCCACTCCCGAAGTCCCTGCAAGTGTTCAGACAGTCACCACAGAATCTT
CTGTGACAGTGAAACTAGAGAACAAGGAATCTCGGGAGCTAATGCTCTTCATCTCCTCCATCGT
TCTGGGAATTCTTCTCCTTGGCTCCCTCATCTTCATAGCCTTCATCCTCTTGAGAATTAAAGGA
AAATATGCCCTCCCCGTAATGGTGAACCACCAGCACCTACCCACCACCATCCCAGCAGGGAGCA
ATAGCTATCAACCGGTCCCCATCACCATCCCCAAAGAAGTTTTCATGCTGCCCATCGAGGTCCA
GGCCCCGCCCCCTGAGGACTCAGACTCTGGCTCGGACTCAGACTATGAGCACTATGACTTCAGC
GCCCAACCTCCTGTGGCCCTGACCACCTTCTACAATTCTCAGCGGCATCGGGTCACAGATGAGG
AGGTCCAGCAGAGCAGGTTCCAGATGCCACCCTTGGAGGAAGGACTTGAAGAGCTGCATGCCTC
CCACATCCCAGCTGCCAGCCCTGGACACTGCATTACAGACCCGCCATCCCTGGGTCCTCAGTAT
CACCCGAGGAGCAACAGTGAGTCGAGCACCTCTTCCGGGGAGGCTTACTGCAATAGTCCCAGAA
GCAAGCCGCCTCCATGGAACCCCCAGGTGTTTTCTTCAGAGAGGAGTTCCTTCCCGGAGCAGCC
CCCAAACTTGGAGCTGGCCAGCACCCAGCCAGCCTTTTCAGCAGGGCCCTCGGCTGATGACAGC
TCCAGCACCTCGTCCGGGGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCCCCCTTCGGAGG
AGCAGTTTGGCTGTCCAGGGTCCCCCAGCCCTCAGCCTGACTCCACCGACAACGATGACTACGA
TGACATCGGCGCAGCCTAGGCCGGGCCAGCCGAGGCCTCTGGGGTGGCTCCGACCCTCTGGCCT
CCTGCTCTACCTATTCCCTTTCCCCTTCCCCTCCCTTCCAGCTCACCTCCCCGTGGGGCTGAGT
CCTCTCTTGGAGAGATGGAAGGAAACGTCACACCTTGTACCGCTCAGTCTCCATCCATCGAGCC
AAACCTGCTGGCACCGCTCTCCCCCGGCCCCAGATAGCAGCCCCAGGGCGGATGCTGCCTCCAA
CAGGTGTGAGCCCTCTGTCTCGGGGATGAACAAGCAGAGTCTGGGCTACCTCTCGGCAGCTGGT
GGAGGGGAGTTGGGGAGCTGGACTGGATGACTCTGGAGGCCCCTTCCAAACCTCAAGTGTCCGA
CGCTTTGATTCCCTGAGTTTCTGACACTTCAGGGCCCAGAAGTCCTGGGAGGGGCAGAACTGGG
CCCCCGTGCCAGTGCTGCTGCAGGAGGACCCACGCACTAGGGGCTGCCGGGCTGTTGTCACTGA
TAGGTGACAACACCTATCAGTGTTGGGATGGGGTAGCACACCAGCTGTCCCAGGCTTTGCTTGG
GGTGGTAACTGCACCTGGGCAGGGAATACAGCCTTCCTGGGCACAACCAGCTGACAATGACAGG
TTGACTGTGTACCCCCAACCAAGGAACTGGGGCCCAAGGCCAGTCCTGCCCCAGAGACACTCCA
AGTCCGCCAGGGGCACAGACCAGTTCTACAGTGACTGTCCCTGGACAATGGGTGTTTATTCTGA
GTTTCCTATGGTTTACAAAGAAGATTCCAGCCCAGCCCCACCACAGACCCCAGAGATAGGGGCC
CAGTCCCCATGGGGGCAGGAGCATAGGGATGTCTTCCAGTGAGGGGCTCAGAAGCTGCACTAGG
CCCCGAGTCCCCATGTGTCTCCTCGAATTGATGAGGATGCTCCTGGGAGGGACGCATGAATACG
CAGTGTTGTACTCCGTGCAGCCCCCAGAAAGAGGCCCACGGGCTCAGACCAGGCTTTGTTGTCC
TGCTCTGAGTATCCTGAGATTAAACTGAATTGCTGAATTAAA

hide sequence

RefSeq Acc Id:

XM_007996509 ⟹ XP_007994700

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
mChlSab1.0.hap1	1	12,813,245 - 12,862,460 (-)	NCBI
Vero_WHO_p1.0	NW_023666038	110,196,562 - 110,245,906 (-)	NCBI
ChlSab1.1	1	12,827,238 - 12,878,299 (-)	NCBI

Sequence:

show sequence

CTGTAGAAGGACTTGTGGGATGGTCCTCTCTCAGGCCCTTCCCAATTTATGTTTCTCTGAGGGG
AGACTTAGGCTCTTATCTCCAAAAGTGCATTAAGACCACACCCTCCTTCCCAACCACCATTGCC
TCTAAGGTTAAGATAAAACTCAGGATTTAATCCATGAGAGCCAAATCGCGCAGACCGGGACAGG
CAATGACAGGACCCAGAATGACAGGGTCATTCCCTCCCTCTTCCAATAGGTACTGATTGAGCAG
CTACTACACTATCAATTTTTTCCTCTGGGCCACCAGAAATGAGGTATGGCCCCTCCACTTGCCT
TCTTAGAAGCCCCTCGGGGAAGTGTGTCTGCATGGATGCGTGTGCATGCGTGTGTCTGGCTCCG
TGACTCTTGGGGTGCCGCCTGGATGGGTGGGCTCCCAGCACCGGCAGCTGGGGCTCTCCCCACC
AGCCCCTGTACCAGCAGCCCAGCTTCCTGCAGACCAAAACCACAAGCAGAACAGGGAGGCGTGA
GACACTCACAGGTTGGGTTTGATCGCATGCGTGTCGGAGGGGAGAGAGCAGCGAGACACAGGAA
CAGGAACAGCGAAGGGCAGAGCAGACCTGCGCCAGGGGCGCACAACGGCCGTGTCCACCTCCCG
GCCCCAAAATGGTGCTTCCCACAGGCAGCCACGTGTAGCAGCCAGAGACAGCTCCAGACATGTG
GCTCTTCTTCGGGATCGCTGGATTGCTGACAGCAGCCCTCTCAGGTCATCTGTCTCCAGCCCCA
CCTGACCAGCTCAACGCCAGCAGTGCAGAGAGCGAGGTCTGGGAGCCAGGGCAGCGGCTTCCGG
TCCGTCTGACGAACGGGAGCAGCAGCTGCAGCGGGACGGTGGAGGTCCGGCTCAAGGCGTCCTG
GGAGCCTGCGTGCTGGGCGCTCTGGGACAGCCGCGCCGCAGAGGCCGTGTGCCGCGCACTGGAC
TGCGGCGGGGCGGAGGCATCCACCCTGCTCCCCCGGCCGACCCCGGAGCTGCCTCCCCCGCCGG
CAGCTGGGAACACAAGCGCTGCAGCTAACGCCACTCTGGCCGGGGCGCCCGCCCTCCTGTGCAG
CGGCACCGAGTGGCAGCTCTGCGAGGTGGTGGAGCACGCGTGCCGCAGCGACGGGAGGCGGGCC
CGCGTCATCTGTGCAGAGAACCGCGCGCTGCGCCTGGTGGACGGTGGCAGCGCCTGCGCCGGCC
GCGTGGAGATGCTGGAGCATGGCGAGTGGGGATCGGTGTGTGATGACACTTGGGACCTGGAGGA
CGCCCACGTGGTGTGCAGGCAACTGGGCTGCGGCTGGGCAGTCCAGGCCCTGCCCGGCTTGCAC
TTCACGCCGGGCCACGGACCTATCCACCGGGACCAGGTGAACTGCTCCGGGGCCGAAGCTTACC
TGTGGGACTGCCCGGGGCTGCCAGGACAGCACTACTGCGGCCACAAAGAGGACGCGGGCGTGGT
GTGCTCAGAGCACCAGTCCTGGCGCCTGACCGGGGGCGCTGACGCCTGCGAGGGGCAGGTGGAG
GTACACTTCCGAGGGGTCTGGAACACAGTGTGTGACAGTGAGTGGTACGCATCAGAGGCCAAGG
TGCTCTGCCAGTCCTTGGGCTGCGGAACCGTGATCGAGAGGCCCAAGGGGCTGCCCCACTCCTT
GTCCGGCAGGATGTACTACTCATGCAACGGGGAGGAGCTCACCCTCTCCAACTGCTCCTGGCGG
TTCAACAACTCCAACCTCTGCAGCCAGTCGCTGGCAGCCAGGGTCCTCTGCTCAGCTTCCCGGA
GTTTGCACAATCTGTCCACTCCCGAAGTCCCTGCAAGTGTTCAGACAGTCACCACAGAATCTTC
TGTGACAGTGAAACTAGAGAACAAGGAATCTCGGGAGCTAATGCTCTTCATCTCCTCCATCGTT
CTGGGAATTCTTCTCCTTGGCTCCCTCATCTTCATAGCCTTCATCCTCTTGAGAATTAAAGGAA
AATATGCCCTCCCCGTAATGGTGAACCACCAGCACCTACCCACCACCATCCCAGCAGGGAGCAA
TAGCTATCAACCGGTCCCCATCACCATCCCCAAAGAAGTTTTCATGCTGCCCATCGAGGTCCAG
GCCCCGCCCCCTGAGGACTCAGACTCTGGCTCGGACTCAGACTATGAGCACTATGACTTCAGCG
CCCAACCTCCTGTGGCCCTGACCACCTTCTACAATTCTCAGCGGCATCGGGTCACAGATGAGGA
GGTCCAGCAGAGCAGGTTCCAGATGCCACCCTTGGAGGAAGGACTTGAAGAGCTGCATGCCTCC
CACATCCCAGCTGCCAGCCCTGGACACTGCATTACAGACCCGCCATCCCTGGGTCCTCAGTATC
ACCCGAGGAGCAACAGTGAGTCGAGCACCTCTTCCGGGGAGGCTTACTGCAATAGTCCCAGAAG
CAAGCCGCCTCCATGGAACCCCCAGGTGTTTTCTTCAGAGAGGAGTTCCTTCCCGGAGCAGCCC
CCAAACTTGGAGCTGGCCAGCACCCAGCCAGCCTTTTCAGGGCCCTCGGCTGATGACAGCTCCA
GCACCTCGTCCGGGGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCCCCCTTCGGAGGAGCA
GTTTGGCTGTCCAGGGTCCCCCAGCCCTCAGCCTGACTCCACCGACAACGATGACTACGATGAC
ATCGGCGCAGCCTAGGCCGGGCCAGCCGAGGCCTCTGGGGTGGCTCCGACCCTCTGGCCTCCTG
CTCTACCTATTCCCTTTCCCCTTCCCCTCCCTTCCAGCTCACCTCCCCGTGGGGCTGAGTCCTC
TCTTGGAGAGATGGAAGGAAACGTCACACCTTGTACCGCTCAGTCTCCATCCATCGAGCCAAAC
CTGCTGGCACCGCTCTCCCCCGGCCCCAGATAGCAGCCCCAGGGCGGATGCTGCCTCCAACAGG
TGTGAGCCCTCTGTCTCGGGGATGAACAAGCAGAGTCTGGGCTACCTCTCGGCAGCTGGTGGAG
GGGAGTTGGGGAGCTGGACTGGATGACTCTGGAGGCCCCTTCCAAACCTCAAGTGTCCGACGCT
TTGATTCCCTGAGTTTCTGACACTTCAGGGCCCAGAAGTCCTGGGAGGGGCAGAACTGGGCCCC
CGTGCCAGTGCTGCTGCAGGAGGACCCACGCACTAGGGGCTGCCGGGCTGTTGTCACTGATAGG
TGACAACACCTATCAGTGTTGGGATGGGGTAGCACACCAGCTGTCCCAGGCTTTGCTTGGGGTG
GTAACTGCACCTGGGCAGGGAATACAGCCTTCCTGGGCACAACCAGCTGACAATGACAGGTTGA
CTGTGTACCCCCAACCAAGGAACTGGGGCCCAAGGCCAGTCCTGCCCCAGAGACACTCCAAGTC
CGCCAGGGGCACAGACCAGTTCTACAGTGACTGTCCCTGGACAATGGGTGTTTATTCTGAGTTT
CCTATGGTTTACAAAGAAGATTCCAGCCCAGCCCCACCACAGACCCCAGAGATAGGGGCCCAGT
CCCCATGGGGGCAGGAGCATAGGGATGTCTTCCAGTGAGGGGCTCAGAAGCTGCACTAGGCCCC
GAGTCCCCATGTGTCTCCTCGAATTGATGAGGATGCTCCTGGGAGGGACGCATGAATACGCAGT
GTTGTACTCCGTGCAGCCCCCAGAAAGAGGCCCACGGGCTCAGACCAGGCTTTGTTGTCCTGCT
CTGAGTATCCTGAGATTAAACTGAATTGCTGAATTAAA

hide sequence

RefSeq Acc Id:

XM_073015761 ⟹ XP_072871862

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
mChlSab1.0.hap1	1	12,813,245 - 12,862,462 (-)	NCBI

RefSeq Acc Id:

XM_073015763 ⟹ XP_072871864

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
mChlSab1.0.hap1	1	12,813,245 - 12,862,464 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007994691	(Get FASTA)	NCBI Sequence Viewer
	XP_007994700	(Get FASTA)	NCBI Sequence Viewer
	XP_072871862	(Get FASTA)	NCBI Sequence Viewer
	XP_072871864	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000002567.1

RefSeq Acc Id:	XP_007994691 ⟸ XM_007996500
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9R1S8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007994700 ⟸ XM_007996509
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9R1S8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000002567 ⟸ ENSCSAT00000004308

RefSeq Acc Id:	XP_072871864 ⟸ XM_073015763
- Peptide Label:	isoform X4
- UniProtKB:	A0A0D9R1S8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_072871862 ⟸ XM_073015761
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9R1S8 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000006284	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000004308.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.250.10	UniProtKB/TrEMBL
InterPro	SRCR	UniProtKB/TrEMBL
	SRCR-like_dom_sf	UniProtKB/TrEMBL
KEGG Report	csab:103234566	UniProtKB/TrEMBL
NCBI Gene	CD6	ENTREZGENE
PANTHER	SCAVENGER RECEPTOR DOMAIN-CONTAINING	UniProtKB/TrEMBL
	T-CELL DIFFERENTIATION ANTIGEN CD6	UniProtKB/TrEMBL
Pfam	SRCR	UniProtKB/TrEMBL
PRINTS	SPERACTRCPTR	UniProtKB/TrEMBL
PROSITE	SRCR_1	UniProtKB/TrEMBL
	SRCR_2	UniProtKB/TrEMBL
SMART	SM00202	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56487	UniProtKB/TrEMBL
UniProt	A0A0D9R1S8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD