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Gene: CD6 (CD6 molecule) Canis lupus familiaris

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Symbol:

CD6

Name:

CD6 molecule

RGD ID:

12145391

Description:

ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN positive regulation of protein phosphorylation (ortholog); ASSOCIATED WITH Breast Cancer, Familial (ortholog); colon adenocarcinoma (ortholog); esophageal cancer (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

T-cell differentiation antigen CD6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CD6 (CD6 molecule)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cd6 (CD6 antigen)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cd6 (Cd6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cd6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CD6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cd6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CD6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CD6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cd6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cd6 (CD6 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	55,296,116 - 55,336,014 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	55,296,986 - 55,335,880 (-)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	53,869,334 - 53,909,224 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	56,344,791 - 56,384,690 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	56,344,791 - 56,384,568 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	55,402,485 - 55,442,306 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	55,023,721 - 55,063,783 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	55,905,105 - 55,944,991 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

colon adenocarcinoma (ISO)

esophageal cancer (ISO)

multiple sclerosis (ISO)

nonpapillary renal cell carcinoma (ISO)

ovarian serous cystadenocarcinoma (ISO)

stomach cancer (ISO)

Thyroid Carcinoma, Nonmedullary 1 (ISO)

uterine corpus endometrial carcinoma (ISO)

uveal melanoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acute inflammatory response to antigenic stimulus (IEA)

heterophilic cell-cell adhesion (IBA,IEA)

immunological synapse formation (IEA)

lipopolysaccharide-mediated signaling pathway (IBA,IEA)

positive regulation of cytokine production involved in inflammatory response (IEA)

positive regulation of protein phosphorylation (ISO)

positive regulation of T cell proliferation (IEA)

response to lipopolysaccharide (IEA)

vesicle-mediated transport (IEA)

Cellular Component

cell surface (ISO)

extracellular region (ISO)

immunological synapse (IEA)

membrane (IEA)

plasma membrane (IBA,IEA)

T cell receptor complex (IEA)

Molecular Function

identical protein binding (IEA)

lipopolysaccharide binding (IEA)

lipoteichoic acid binding (IEA)

protein binding (ISO)

protein kinase binding (ISO)

scavenger receptor activity (IBA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

CD6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	55,296,116 - 55,336,014 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	55,296,986 - 55,335,880 (-)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	53,869,334 - 53,909,224 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	56,344,791 - 56,384,690 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	56,344,791 - 56,384,568 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	55,402,485 - 55,442,306 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	55,023,721 - 55,063,783 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	55,905,105 - 55,944,991 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CD6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	60,971,680 - 61,020,377 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	60,971,651 - 61,020,377 (+)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	11	60,739,152 - 60,787,849 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	60,495,750 - 60,544,425 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	60,495,749 - 60,544,422	NCBI
Celera	11	58,099,987 - 58,148,914 (+)	NCBI		Celera
Cytogenetic Map	11	q12.2	NCBI
HuRef	11	57,085,244 - 57,134,039 (+)	NCBI		HuRef
CHM1_1	11	60,605,326 - 60,654,240 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	60,922,811 - 60,971,572 (+)	NCBI		T2T-CHM13v2.0

Cd6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	10,766,703 - 10,807,427 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	10,766,705 - 10,807,422 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	19	10,789,339 - 10,830,062 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	10,789,341 - 10,830,058 (-)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	19	10,863,829 - 10,904,548 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	19	10,856,386 - 10,897,098 (-)	NCBI		MGSCv36	mm8
Celera	19	11,482,305 - 11,523,180 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	7.16	NCBI

Cd6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	216,867,767 - 216,906,642 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	216,867,771 - 216,879,432 (-)	Ensembl				GRCr8
mRatBN7.2	1	207,442,873 - 207,481,703 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	207,442,877 - 207,481,634 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	215,817,721 - 215,856,474 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	222,876,916 - 222,915,651 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	215,572,103 - 215,610,862 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	1	216,228,371 - 216,267,081 (-)	NCBI
Lyon_Normotensive	1	221,137,466 - 221,176,175 (-)	NCBI
Lyon_Hypertensive	1	217,891,837 - 217,930,544 (-)	NCBI
F344_StmMcwi	1	216,118,620 - 216,157,331 (-)	NCBI
Rnor_6.0	1	226,848,399 - 226,887,259 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	226,848,403 - 226,887,156 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	1	233,913,073 - 233,951,869 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	213,290,835 - 213,329,594 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	204,934,769 - 204,973,456 (-)	NCBI		Celera
RGSC_v3.1	1	213,449,267 - 213,487,963 (-)	NCBI
Cytogenetic Map	1	q43	NCBI

Cd6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955511	5,592,176 - 5,617,421 (+)	NCBI	ChiLan1.0	ChiLan1.0

CD6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	62,140,849 - 62,189,584 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	63,219,722 - 63,233,664 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	56,269,585 - 56,283,516 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	59,691,762 - 59,723,974 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	59,675,221 - 59,722,916 (+)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

Cd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	4	11,687,320 - 11,724,737 (-)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024404947	11,818,710 - 11,829,849 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	1,932,668 - 1,969,126 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	1,932,596 - 1,943,671 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CD6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	10,738,471 - 10,785,516 (-)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	2	10,739,560 - 10,785,548 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	10,240,961 - 10,329,820 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	1	12,813,245 - 12,862,464 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666038	110,196,562 - 110,245,906 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	1	12,827,238 - 12,878,304 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	12,828,285 - 12,877,704 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

Cd6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624926	325,327 - 333,405 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624926	324,828 - 333,246 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl

Cd6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	10,273,851 - 10,311,207 (-)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Variants

Variants in CD6
754 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005631691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014121151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014121152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014121153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014121154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014121155	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014121156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038425467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038454304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038454305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038454306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038454307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038501693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038501694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038501695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038501696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038501697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038564424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038564425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038564426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038564427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038564428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038628548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038628549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038628550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038628551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038628552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000025972 ⟹ ENSCAFP00000024110

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	18	55,296,986 - 55,335,880 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845030871 ⟹ ENSCAFP00845024198

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	18	56,344,791 - 56,384,568 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845030964 ⟹ ENSCAFP00845024264

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	18	56,344,796 - 56,384,529 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845031041 ⟹ ENSCAFP00845024321

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	18	56,344,796 - 56,384,480 (-)	Ensembl

RefSeq Acc Id:

XM_005631691 ⟹ XP_005631748

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	18	55,296,116 - 55,336,014 (-)	NCBI
Dog10K_Boxer_Tasha	18	53,869,334 - 53,909,221 (-)	NCBI

Sequence:

show sequence

TGGGGTTCAGCCAGGCTGGGTGGGCTCACAGCAGAGGCAGCCAGGCTCTCCCTCTCAGCCCCTG
TGATACCAGCCTGGCTTCCTGGAGACCAAAACCACAAGTAGAGCACAGAAGAGAGACACTCACA
GGCTGGGTTTGGTCGCATGCGTGCAAAGGAGCACTCTCTTGCAGAGAGAAGGTTATAAGCGGGA
GCAGCTAAGGTCCGAGCAGGTTCGAGGAACGCACAGCAGCCACATCCACCTGCCGGCCCCAGGA
TGGTTCTTCCCTCTGGCAGGCACACGTAGCAGTCAGAGATGGCACCAGACATGTGGCTCTTCTC
TGCGACTGTTGGATTGCTCACGGCAGCCCTCTCAGGTCACCTGACTCCAGCCCCATCTGATCAG
CCCAACACCAGCAGTGCCAAGAGCCAGACCTTGGAGCCGGGGCAGCAGCTCGGGGTCCGCCTGG
TGAATGGGAGCAGCCGCTGCAGCGGGCTGGTGGAGGTCTGGTTCAGGCTGTCCTGGGGCCCTGC
TTGCCGGGCGCTCTGGGACAGCCGCGCCTCTGAGGCCGTGTGTCGTGCGCTGGGCTGTGGCGGG
GCCGCGGAATCCACCCAGCCCACCTCGCCGTCCCTGGAGCTGCCACCCCGGCCAGGTGCGGGCA
ACGCCAGCGAGGCCTTGAACGCCACCCTGGCCCTGGCGCCCGCCGTCCTGTGCAGAGGTGCCGA
GTGGCGGCTCTGCTACGTGGAGGAGCGTGCATGCGACAGTAATGGGAGTCCGGCTGAGGTCACC
TGCGCAGAAAACCGCGCGGTGCGGTTGACAGGCGGTAGCGGTCCATGCGCAGGCCGCGTGGAGA
TGCTAGAGCACCGCCAGTGGGGTTCAGTGTGCGACGACTCGTGGGACCTGGAGGATTCCCACGT
GGTGTGCCGGCAGCTGAACTGCGGCTGGGCGGTTCAGGCTCTGCCCGGCTTGCACTTTGCCCCT
GGCCGAGGACCCATCCACCGGGACCAGGTGAACTGCTCCGGGGCCGAGGCCTACCTGTGGGACT
GCCCGGGGCTGCCAGGAGACGGGTACTGCGGTCATAAGGAGGACGCCGGCGTGGTGTGTTCAGA
GCACCAGTCCTGGCGCCTGACTGGGGGCGCTGACTCCTGCGAGGGGCAGGTGGAGGTACATTTC
CGTGGGGTCTGGAGCACAGTGTGTAACAGTGAGTGGTACTCACAGGAGGCCCAGGTACTCTGCC
GGGCCTTGGGCTGCGGGACCGTGGCCAGAATACCCAATGGGCTGCCCCACTCCCTGCCGGGCAG
GATGTACTACTCATGCAGAGGAGAGGAACCCACCCTCTCGCACTGCTCCTGGCGGTTCAACAAC
TCCAACCTCTGCAGCCAGTCGAACGCAGCCAGAGTCCTCTGCTCAGGCTCCCGGAGTCTGCTCA
ATCTGTCCACTCCTGAAGTCCCTGCAAGTATTCAGCCGATCACTGTGGAATCTTCTGTGACCAT
GACAACGGAGGACTGGAAACCCCGGGAATTAATGCTCCTCATCCTCTGCATCACTCTGGGAATT
CTCTGCCTTGGCTTACTCATCTCCATGGCCTTCATCTTCTTGAAAGTTAAAGGAAAATATGCCC
TCCCTGTTATGGTGAACAGCCCACACCTCCTCACCACCACCCCAGAAGGGATCAATAGCTATCA
AGATGTCCCCATCACCATTTCCAAAGAAGAAGTTCCCATGCTGCCCATCCAGGCGCAGGCCCCA
CCCCCCAAGGACCCGGACTCCAGCTCGGACTCAGACTATGAGCACTATGACTTCAGCACCCAGC
CTCCCGTGGCCCTGACCACCTTTTACAATTCCCAGCGGCACCGCATCACAGACGAGGAGGTCCA
GCAGAACCGGTTCCAGATGCCCCTCCTGGAAGAAGCTGAGGAGGTCCAGCAGAACCAGTTCCAG
ATGCTCCCCCCGGAGGAAGGACTTGAAGAGATGAACGTGTCCCAGGTCCCACCCATTGGTGCTG
GACACTACATGGCAAACACCCCCTCCCTGGGCTCTCAACACCGCCCAAGGAGCAGCAGTGAATC
CAGCACATCCTCTGGGGAGGATTACTGCAATAGCCCCAGCAGCAGGCTACCTCCGTGGACCCCC
CAGGTGTTTTCTGCAGAGAGGAGCCCCCACCTGGAGCAGCCCCCGAACCTGGAGCTGGCTGGCT
CCCAAGCTACTTTTTCAGCAGGGCCCTTGGCTGATGACAGCTCCAGCACTTCATCCGGGGAGTG
GTACCAGAACTTCCAGCCGCCGCCCCAGCCCCCCTCAACGGAGCAGTTTGAGTGTCCAGGACCC
CCCACTCCCCAGCCTGATTCCGTTGACGGCGAAGACTATGATGACATCGGAGCGGCCTAGGGCT
AGACTCAGCAAGGCTCCAGGTGGCTCCCTCCTGCTGGACTCCTGCTCTACCTGCCCCTACTCTC
CCACCCCGTCCTCCCGCATATTCCCCCAGGGGCCTGACAGGCCTCCTCTGGAGAGACGCAGGGA
AAGCCCTCACCCTGCACCCACAGCTCCATCTCCATCCATCAAACAGAAGCTGCTGGCACAGCCC
TCCCTTGGCCCCAGACAGCCCTGAGGTGGAGGGTGCTGCCTCTGAGAAGTAGTGAGCTCTCTGT
CTCAGGGATGAACAAGCGGCCACCTTTCAGCAGACTGCAAGAAGGTCTGAGCATAATGACTTCT
GAGGCCCTTTCTGATCCTTGGGGGTCTGTGCTTTAGTTCCCTGAGTCTCAGGTCAAGGCCTGGA
GGCACTGAGCGAGCAGAAATGGGCCCCATCCCAGTGCCCCCATGTGCGGGCTGCTAGGCTGCTG
TTGCTTTGACAGGTGGAGTCTGGGGCTGAGGGTGGCCCACCACTGACCCAGGTTGGCAGCCACC
TGGGCACTTAGGAGCAGCCGGCTGACAGCAAGCAGGTCGACCCTACCCCTAGAGACCCGGAGCC
AATCAGGGCACCTCCCTGCTCTGCAGGGACCATCCCTGGACATGAGGTCCTGCTTCGGAGCTTC
CTGTGGCATACAAAGACAGCCCTAGCCCAGCTCCCCCAAGACCCAGAGTTGGGCCCCAGTCCCT
TGGGACAGAAGCACAGAGAGGAGCCCCCGTGTCTGCTAGCACCGTTGGGGGCTTCCCTGAGGAG
CACGTGCACACGCAGCTGACTCACCCTGAGCACAGACATGTGCAGGCGGCCTGAGGGCTCAGAG
CCAGCTTCTAGTGCCCAGTTCTGAGTATCCCGAGATTAAAGTAATTGCTGAATAAAA

hide sequence

RefSeq Acc Id:

XM_038425463 ⟹ XP_038281391

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	56,344,791 - 56,384,687 (-)	NCBI

RefSeq Acc Id:

XM_038425464 ⟹ XP_038281392

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	56,344,791 - 56,384,687 (-)	NCBI

RefSeq Acc Id:

XM_038425465 ⟹ XP_038281393

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	56,344,791 - 56,384,690 (-)	NCBI

RefSeq Acc Id:

XM_038425466 ⟹ XP_038281394

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	56,344,791 - 56,384,690 (-)	NCBI

RefSeq Acc Id:

XM_038425467 ⟹ XP_038281395

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	56,344,791 - 56,384,689 (-)	NCBI

RefSeq Acc Id:

XM_038454304 ⟹ XP_038310232

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	18	53,869,334 - 53,909,220 (-)	NCBI

RefSeq Acc Id:

XM_038454305 ⟹ XP_038310233

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	18	53,869,334 - 53,909,223 (-)	NCBI

RefSeq Acc Id:

XM_038454306 ⟹ XP_038310234

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	18	53,869,334 - 53,909,224 (-)	NCBI

RefSeq Acc Id:

XM_038454307 ⟹ XP_038310235

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	18	53,869,334 - 53,909,222 (-)	NCBI

RefSeq Acc Id:

XM_038501693 ⟹ XP_038357621

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	55,402,485 - 55,442,303 (-)	NCBI

RefSeq Acc Id:

XM_038501694 ⟹ XP_038357622

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	55,402,485 - 55,442,302 (-)	NCBI

RefSeq Acc Id:

XM_038501695 ⟹ XP_038357623

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	55,402,485 - 55,442,305 (-)	NCBI

RefSeq Acc Id:

XM_038501696 ⟹ XP_038357624

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	55,402,485 - 55,442,306 (-)	NCBI

RefSeq Acc Id:

XM_038501697 ⟹ XP_038357625

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	55,402,485 - 55,442,304 (-)	NCBI

RefSeq Acc Id:

XM_038564424 ⟹ XP_038420352

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	55,905,105 - 55,944,988 (-)	NCBI

RefSeq Acc Id:

XM_038564425 ⟹ XP_038420353

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	55,905,105 - 55,944,987 (-)	NCBI

RefSeq Acc Id:

XM_038564426 ⟹ XP_038420354

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	55,905,105 - 55,944,990 (-)	NCBI

RefSeq Acc Id:

XM_038564427 ⟹ XP_038420355

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	55,905,105 - 55,944,991 (-)	NCBI

RefSeq Acc Id:

XM_038564428 ⟹ XP_038420356

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	55,905,105 - 55,944,990 (-)	NCBI

RefSeq Acc Id:

XM_038628548 ⟹ XP_038484476

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	55,023,721 - 55,063,780 (-)	NCBI

RefSeq Acc Id:

XM_038628549 ⟹ XP_038484477

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	55,023,721 - 55,063,780 (-)	NCBI

RefSeq Acc Id:

XM_038628550 ⟹ XP_038484478

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	55,023,721 - 55,063,783 (-)	NCBI

RefSeq Acc Id:

XM_038628551 ⟹ XP_038484479

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	55,023,721 - 55,063,783 (-)	NCBI

RefSeq Acc Id:

XM_038628552 ⟹ XP_038484480

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	55,023,721 - 55,063,782 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005631748	(Get FASTA)	NCBI Sequence Viewer
	XP_038281391	(Get FASTA)	NCBI Sequence Viewer
	XP_038281392	(Get FASTA)	NCBI Sequence Viewer
	XP_038281393	(Get FASTA)	NCBI Sequence Viewer
	XP_038281394	(Get FASTA)	NCBI Sequence Viewer
	XP_038281395	(Get FASTA)	NCBI Sequence Viewer
	XP_038310232	(Get FASTA)	NCBI Sequence Viewer
	XP_038310233	(Get FASTA)	NCBI Sequence Viewer
	XP_038310234	(Get FASTA)	NCBI Sequence Viewer
	XP_038310235	(Get FASTA)	NCBI Sequence Viewer
	XP_038357621	(Get FASTA)	NCBI Sequence Viewer
	XP_038357622	(Get FASTA)	NCBI Sequence Viewer
	XP_038357623	(Get FASTA)	NCBI Sequence Viewer
	XP_038357624	(Get FASTA)	NCBI Sequence Viewer
	XP_038357625	(Get FASTA)	NCBI Sequence Viewer
	XP_038420352	(Get FASTA)	NCBI Sequence Viewer
	XP_038420353	(Get FASTA)	NCBI Sequence Viewer
	XP_038420354	(Get FASTA)	NCBI Sequence Viewer
	XP_038420355	(Get FASTA)	NCBI Sequence Viewer
	XP_038420356	(Get FASTA)	NCBI Sequence Viewer
	XP_038484476	(Get FASTA)	NCBI Sequence Viewer
	XP_038484477	(Get FASTA)	NCBI Sequence Viewer
	XP_038484478	(Get FASTA)	NCBI Sequence Viewer
	XP_038484479	(Get FASTA)	NCBI Sequence Viewer
	XP_038484480	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00845024198
	ENSCAFP00845024198.1
	ENSCAFP00845024264
	ENSCAFP00845024264.1
	ENSCAFP00845024321
	ENSCAFP00845024321.1

RefSeq Acc Id:	XP_005631748 ⟸ XM_005631691
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3NSL9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPDMWLFSATVGLLTAALSGHLTPAPSDQPNTSSAKSQTLEPGQQLGVRLVNGSSRCSGLVEV WFRLSWGPACRALWDSRASEAVCRALGCGGAAESTQPTSPSLELPPRPGAGNASEALNATLALA PAVLCRGAEWRLCYVEERACDSNGSPAEVTCAENRAVRLTGGSGPCAGRVEMLEHRQWGSVCDD SWDLEDSHVVCRQLNCGWAVQALPGLHFAPGRGPIHRDQVNCSGAEAYLWDCPGLPGDGYCGHK EDAGVVCSEHQSWRLTGGADSCEGQVEVHFRGVWSTVCNSEWYSQEAQVLCRALGCGTVARIPN GLPHSLPGRMYYSCRGEEPTLSHCSWRFNNSNLCSQSNAARVLCSGSRSLLNLSTPEVPASIQP ITVESSVTMTTEDWKPRELMLLILCITLGILCLGLLISMAFIFLKVKGKYALPVMVNSPHLLTT TPEGINSYQDVPITISKEEVPMLPIQAQAPPPKDPDSSSDSDYEHYDFSTQPPVALTTFYNSQR HRITDEEVQQNRFQMPLLEEAEEVQQNQFQMLPPEEGLEEMNVSQVPPIGAGHYMANTPSLGSQ HRPRSSSESSTSSGEDYCNSPSSRLPPWTPQVFSAERSPHLEQPPNLELAGSQATFSAGPLADD SSSTSSGEWYQNFQPPPQPPSTEQFECPGPPTPQPDSVDGEDYDDIGAA hide sequence

Ensembl Acc Id:

ENSCAFP00000024110 ⟸ ENSCAFT00000025972

RefSeq Acc Id:	XP_038357624 ⟸ XM_038501696
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038357623 ⟸ XM_038501695
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038357625 ⟸ XM_038501697
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038357621 ⟸ XM_038501693
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038357622 ⟸ XM_038501694
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038484479 ⟸ XM_038628551
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038484478 ⟸ XM_038628550
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038484480 ⟸ XM_038628552
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038484477 ⟸ XM_038628549
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038484476 ⟸ XM_038628548
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038281394 ⟸ XM_038425466
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I3NSL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038281393 ⟸ XM_038425465
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I3NSL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038281395 ⟸ XM_038425467
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I3S2N9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038281392 ⟸ XM_038425464
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3P3R0 (UniProtKB/TrEMBL), A0A8I3NSL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038281391 ⟸ XM_038425463
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3NSL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038310234 ⟸ XM_038454306
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I3NSL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038310233 ⟸ XM_038454305
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I3NSL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038310235 ⟸ XM_038454307
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I3S2N9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038310232 ⟸ XM_038454304
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3NSL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038420355 ⟸ XM_038564427
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I3NSL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038420356 ⟸ XM_038564428
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I3S2N9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038420354 ⟸ XM_038564426
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I3NSL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038420352 ⟸ XM_038564424
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3NSL9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038420353 ⟸ XM_038564425
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3NSL9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845024321 ⟸ ENSCAFT00845031041

Ensembl Acc Id:

ENSCAFP00845024264 ⟸ ENSCAFT00845030964

Ensembl Acc Id:

ENSCAFP00845024198 ⟸ ENSCAFT00845030871

Protein Domains

SRCR

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000016378	Ensembl
	ENSCAFG00845017424	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00845030871	ENTREZGENE
	ENSCAFT00845030871.1	UniProtKB/TrEMBL
	ENSCAFT00845030964	ENTREZGENE
	ENSCAFT00845030964.1	UniProtKB/TrEMBL
	ENSCAFT00845031041	ENTREZGENE
	ENSCAFT00845031041.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.250.10	UniProtKB/TrEMBL
InterPro	SRCR	UniProtKB/TrEMBL
	SRCR-like_dom_sf	UniProtKB/TrEMBL
NCBI Gene	CD6	ENTREZGENE
PANTHER	SCAVENGER RECEPTOR DOMAIN-CONTAINING	UniProtKB/TrEMBL
	T-CELL DIFFERENTIATION ANTIGEN CD6	UniProtKB/TrEMBL
Pfam	SRCR	UniProtKB/TrEMBL
PRINTS	SPERACTRCPTR	UniProtKB/TrEMBL
PROSITE	SRCR_2	UniProtKB/TrEMBL
SMART	SM00202	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56487	UniProtKB/TrEMBL
UniProt	A0A8I3NSL9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P3R0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3S2N9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:38966	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD