LOC103225977 (chymotrypsin-C) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC103225977 (chymotrypsin-C) Chlorocebus sabaeus
Analyze
Symbol: LOC103225977
Name: chymotrypsin-C
RGD ID: 18644677
Description: ENCODES a protein that exhibits peptidase activity (inferred); serine-type endopeptidase activity (inferred); serine-type peptidase activity (inferred); INVOLVED IN intracellular calcium ion homeostasis (ortholog); proteolysis (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Chronic Pancreatitis (ortholog); Hereditary Pancreatitis (ortholog); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chymotrypsin C; CTRC
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120116,825,105 - 116,837,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605420,553,635 - 20,562,172 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC103225977
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120116,825,105 - 116,837,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605420,553,635 - 20,562,172 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CTRC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,438,443 - 15,449,242 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,438,442 - 15,449,242 (+)EnsemblGRCh38hg38GRCh38
GRCh37115,764,939 - 15,775,737 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,637,525 - 15,645,740 (+)NCBINCBI36Build 36hg18NCBI36
Build 34115,510,266 - 15,518,459NCBI
Celera114,247,812 - 14,256,036 (+)NCBICelera
Cytogenetic Map1p36.21NCBI
HuRef114,284,975 - 14,292,965 (+)NCBIHuRef
CHM1_1115,563,607 - 15,571,831 (+)NCBICHM1_1
T2T-CHM13v2.0114,883,158 - 14,893,965 (+)NCBIT2T-CHM13v2.0
Ctrc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394141,565,550 - 141,573,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4141,565,550 - 141,573,670 (-)EnsemblGRCm39 Ensembl
GRCm384141,838,239 - 141,846,287 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,814,962 - 141,846,359 (-)EnsemblGRCm38mm10GRCm38
MGSCv374141,394,154 - 141,402,274 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364141,110,315 - 141,118,433 (-)NCBIMGSCv36mm8
Celera4143,663,843 - 143,672,528 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map474.75NCBI
Ctrc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85159,430,333 - 159,439,557 (-)NCBIGRCr8
mRatBN7.25154,147,314 - 154,156,540 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5154,147,316 - 154,156,528 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,832,248 - 156,841,319 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05158,605,546 - 158,614,617 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05158,594,698 - 158,603,769 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05160,394,677 - 160,403,373 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5160,394,580 - 160,405,050 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05164,106,200 - 164,115,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,742,491 - 160,755,332 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,748,258 - 160,765,508 (-)NCBI
Celera5152,500,014 - 152,508,395 (-)NCBICelera
Cytogenetic Map5q36NCBI
Ctrc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555272,714,210 - 2,719,598 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555272,714,001 - 2,719,598 (-)NCBIChiLan1.0ChiLan1.0
CTRC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21211,473,375 - 211,482,329 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11210,721,838 - 210,730,788 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0114,576,496 - 14,588,143 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1115,571,771 - 15,580,000 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl115,571,771 - 15,580,000 (+)Ensemblpanpan1.1panPan2
LOC478220
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1282,075,135 - 82,081,091 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,612,480 - 78,618,473 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,724,375 - 82,730,364 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1279,477,146 - 79,483,132 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0280,495,080 - 80,501,075 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0281,559,591 - 81,565,591 (-)NCBIUU_Cfam_GSD_1.0
LOC101967812
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505837,312,058 - 37,338,599 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364743,128,053 - 3,163,381 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTRC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl674,674,836 - 74,681,309 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1674,674,836 - 74,681,311 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2669,055,983 - 69,062,605 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ctrc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247641,741,703 - 1,747,712 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247641,741,703 - 1,747,715 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_037985423   ⟹   XP_037841351
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605420,553,635 - 20,562,172 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037841351 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017175.1
RefSeq Acc Id: XP_037841351   ⟸   XM_037985423
- UniProtKB: A0A0D9S8I6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000831 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017702.1 UniProtKB/TrEMBL
Gene3D-CATH Trypsin-like serine proteases UniProtKB/TrEMBL
InterPro Peptidase_S1_Elastase_sf UniProtKB/TrEMBL
  Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
NCBI Gene CTRC ENTREZGENE
PANTHER CHYMOTRYPSIN-C UniProtKB/TrEMBL
  CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER UniProtKB/TrEMBL
Pfam Trypsin UniProtKB/TrEMBL
PRINTS CHYMOTRYPSIN UniProtKB/TrEMBL
PROSITE TRYPSIN_DOM UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
SMART Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP Trypsin-like serine proteases UniProtKB/TrEMBL
UniProt A0A0D9S8I6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103225977  chymotrypsin-C  CTRC  chymotrypsin C  Symbol and/or name change 5135510 APPROVED