FAM43A (family with sequence similarity 43 member A) - Rat Genome Database

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Gene: FAM43A (family with sequence similarity 43 member A) Chlorocebus sabaeus
Analyze
Symbol: FAM43A
Name: family with sequence similarity 43 member A
RGD ID: 18636101
Description: ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein FAM43A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11588,771,634 - 88,774,770 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1588,772,565 - 88,773,836 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604162,460,502 - 62,463,654 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
FAM43A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11588,771,634 - 88,774,770 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1588,772,565 - 88,773,836 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604162,460,502 - 62,463,654 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FAM43A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383194,685,883 - 194,689,037 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3194,685,883 - 194,689,037 (+)EnsemblGRCh38hg38GRCh38
GRCh373194,406,612 - 194,409,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363195,887,911 - 195,891,055 (+)NCBINCBI36Build 36hg18NCBI36
Build 343195,887,918 - 195,891,061NCBI
Celera3192,820,433 - 192,823,578 (+)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3191,784,777 - 191,787,922 (+)NCBIHuRef
CHM1_13194,369,331 - 194,372,476 (+)NCBICHM1_1
T2T-CHM13v2.03197,382,461 - 197,385,616 (+)NCBIT2T-CHM13v2.0
Fam43a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391630,418,541 - 30,421,615 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1630,418,541 - 30,421,615 (+)EnsemblGRCm39 Ensembl
GRCm381630,599,723 - 30,602,797 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1630,599,723 - 30,602,797 (+)EnsemblGRCm38mm10GRCm38
MGSCv371630,599,809 - 30,602,883 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361630,519,470 - 30,522,502 (+)NCBIMGSCv36mm8
Celera1631,114,283 - 31,117,357 (+)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.34NCBI
Fam43a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81183,633,165 - 83,636,313 (-)NCBIGRCr8
mRatBN7.21170,128,253 - 70,131,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1170,128,253 - 70,131,401 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1178,972,298 - 78,975,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,609,970 - 71,613,113 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01170,661,406 - 70,664,554 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01173,676,601 - 73,679,003 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,676,601 - 73,678,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01176,748,265 - 76,750,667 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41172,010,484 - 72,012,886 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11172,068,960 - 72,078,160 (-)NCBI
Celera11128,018 - 130,420 (+)NCBICelera
Cytogenetic Map11q22NCBI
Fam43a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542014,203,879 - 14,205,165 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542014,202,955 - 14,206,087 (-)NCBIChiLan1.0ChiLan1.0
FAM43A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22192,609,863 - 192,612,030 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13192,614,585 - 192,616,755 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03191,981,521 - 191,984,684 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13202,291,669 - 202,294,824 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3202,292,603 - 202,293,877 (+)Ensemblpanpan1.1panPan2
FAM43A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13331,070,520 - 31,073,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3331,070,951 - 31,073,312 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3331,101,312 - 31,103,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03331,329,672 - 31,332,254 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3331,330,856 - 31,332,208 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13331,123,619 - 31,126,204 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03331,158,810 - 31,161,371 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03331,784,902 - 31,787,487 (-)NCBIUU_Cfam_GSD_1.0
Fam43a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602124,110,293 - 124,113,397 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936711137,281 - 138,570 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936711136,411 - 139,558 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM43A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13131,663,310 - 131,665,439 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113131,662,474 - 131,665,653 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213141,266,879 - 141,269,989 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Fam43a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473063,205,990 - 63,207,267 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473063,205,027 - 63,208,444 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008009574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000019355   ⟹   ENSCSAP00000018775
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1588,772,565 - 88,773,836 (+)Ensembl
RefSeq Acc Id: XM_008009574   ⟹   XP_008007765
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11588,771,634 - 88,774,770 (+)NCBI
Vero_WHO_p1.0NW_02366604162,460,502 - 62,463,654 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008007765 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018775
  ENSCSAP00000018775.1
RefSeq Acc Id: XP_008007765   ⟸   XM_008009574
- UniProtKB: A0A0D9SD36 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000018775   ⟸   ENSCSAT00000019355


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019265 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019355.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro Adapter_Engulfment-Domain UniProtKB/TrEMBL
  FAM43A/B_PTB UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PTB/PI_dom UniProtKB/TrEMBL
KEGG Report csab:103241950 UniProtKB/TrEMBL
NCBI Gene FAM43A ENTREZGENE
PANTHER PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER UniProtKB/TrEMBL
  PROTEIN FAM43A UniProtKB/TrEMBL
Pfam PID_2 UniProtKB/TrEMBL
SMART PTB UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A0D9SD36 ENTREZGENE, UniProtKB/TrEMBL