Fam43a (family with sequence similarity 43, member A) - Rat Genome Database

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Gene: Fam43a (family with sequence similarity 43, member A) Mus musculus
Analyze
Symbol: Fam43a
Name: family with sequence similarity 43, member A
RGD ID: 1312437
MGI Page MGI
Description: Orthologous to human FAM43A (family with sequence similarity 43 member A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: somitovasculin; Tuf1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391630,418,541 - 30,421,615 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1630,418,541 - 30,421,615 (+)EnsemblGRCm39 Ensembl
GRCm381630,599,723 - 30,602,797 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1630,599,723 - 30,602,797 (+)EnsemblGRCm38mm10GRCm38
MGSCv371630,599,809 - 30,602,883 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361630,519,470 - 30,522,502 (+)NCBIMGSCv36mm8
Celera1631,114,283 - 31,117,357 (+)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-pantothenic acid  (ISO)
1-naphthyl isothiocyanate  (ISO)
15-acetyldeoxynivalenol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3-chloropropane-1,2-diol  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (EXP)
acetamide  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
avobenzone  (ISO)
azathioprine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (EXP)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glycidol  (ISO)
hydroquinone  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (EXP)
methotrexate  (ISO)
methylisothiazolinone  (ISO)
N-nitrosodimethylamine  (ISO)
nickel sulfate  (ISO)
niclosamide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
phenylmercury acetate  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercitrin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:19542019  
PMID:21267068  


Genomics

Comparative Map Data
Fam43a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391630,418,541 - 30,421,615 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1630,418,541 - 30,421,615 (+)EnsemblGRCm39 Ensembl
GRCm381630,599,723 - 30,602,797 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1630,599,723 - 30,602,797 (+)EnsemblGRCm38mm10GRCm38
MGSCv371630,599,809 - 30,602,883 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361630,519,470 - 30,522,502 (+)NCBIMGSCv36mm8
Celera1631,114,283 - 31,117,357 (+)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.34NCBI
FAM43A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383194,685,883 - 194,689,037 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3194,685,883 - 194,689,037 (+)EnsemblGRCh38hg38GRCh38
GRCh373194,406,612 - 194,409,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363195,887,911 - 195,891,055 (+)NCBINCBI36Build 36hg18NCBI36
Build 343195,887,918 - 195,891,061NCBI
Celera3192,820,433 - 192,823,578 (+)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3191,784,777 - 191,787,922 (+)NCBIHuRef
CHM1_13194,369,331 - 194,372,476 (+)NCBICHM1_1
T2T-CHM13v2.03197,382,461 - 197,385,616 (+)NCBIT2T-CHM13v2.0
Fam43a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81183,633,165 - 83,636,313 (-)NCBIGRCr8
mRatBN7.21170,128,253 - 70,131,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1170,128,253 - 70,131,401 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1178,972,298 - 78,975,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,609,970 - 71,613,113 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01170,661,406 - 70,664,554 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01173,676,601 - 73,679,003 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,676,601 - 73,678,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01176,748,265 - 76,750,667 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41172,010,484 - 72,012,886 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11172,068,960 - 72,078,160 (-)NCBI
Celera11128,018 - 130,420 (+)NCBICelera
Cytogenetic Map11q22NCBI
Fam43a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542014,203,879 - 14,205,165 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542014,202,955 - 14,206,087 (-)NCBIChiLan1.0ChiLan1.0
FAM43A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22192,609,863 - 192,612,030 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13192,614,585 - 192,616,755 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03191,981,521 - 191,984,684 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13202,291,669 - 202,294,824 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3202,292,603 - 202,293,877 (+)Ensemblpanpan1.1panPan2
FAM43A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13331,070,520 - 31,073,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3331,070,951 - 31,073,312 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3331,101,312 - 31,103,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03331,329,672 - 31,332,254 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3331,330,856 - 31,332,208 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13331,123,619 - 31,126,204 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03331,158,810 - 31,161,371 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03331,784,902 - 31,787,487 (-)NCBIUU_Cfam_GSD_1.0
Fam43a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602124,110,293 - 124,113,397 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936711137,281 - 138,570 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936711136,411 - 139,558 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM43A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13131,663,310 - 131,665,439 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113131,662,474 - 131,665,653 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213141,266,879 - 141,269,989 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM43A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11588,771,634 - 88,774,770 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1588,772,565 - 88,773,836 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604162,460,502 - 62,463,654 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam43a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473063,205,990 - 63,207,267 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473063,205,027 - 63,208,444 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam43a
126 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:381
Count of miRNA genes:266
Interacting mature miRNAs:313
Transcripts:ENSMUST00000059078
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
15092062Egrme4_mearly growth rate, maternal effect 4 (mouse)162521866444220250Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000059078   ⟹   ENSMUSP00000056555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1630,418,541 - 30,421,615 (+)Ensembl
GRCm38.p6 Ensembl1630,599,723 - 30,602,797 (+)Ensembl
RefSeq Acc Id: NM_177632   ⟹   NP_808300
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391630,418,541 - 30,421,615 (+)NCBI
GRCm381630,599,723 - 30,602,797 (+)ENTREZGENE
MGSCv371630,599,809 - 30,602,883 (+)RGD
Celera1631,114,283 - 31,117,357 (+)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_808300   ⟸   NM_177632
- UniProtKB: A4FTY9 (UniProtKB/Swiss-Prot),   Q8R231 (UniProtKB/Swiss-Prot),   Q8BUP8 (UniProtKB/Swiss-Prot),   Q3UUV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000056555   ⟸   ENSMUST00000059078
Protein Domains
PID

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BUP8-F1-model_v2 AlphaFold Q8BUP8 1-424 view protein structure

Promoters
RGD ID:8685944
Promoter ID:EPDNEW_M21002
Type:single initiation site
Name:Fam43a_1
Description:Mus musculus family with sequence similarity 43, member A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381630,599,726 - 30,599,786EPDNEW
RGD ID:6827042
Promoter ID:MM_KWN:20690
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_177632
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361630,599,771 - 30,602,722 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676309 AgrOrtholog
Ensembl Genes ENSMUSG00000046546 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000059078 ENTREZGENE
  ENSMUST00000059078.4 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FAM43A/B_PTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTB/PI_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:224093 UniProtKB/Swiss-Prot
MGD MGI:2676309 ENTREZGENE
NCBI Gene 224093 ENTREZGENE
PANTHER PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN FAM43A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PID_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fam43a PhenoGen
SMART PTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A4FTY9 ENTREZGENE
  FA43A_MOUSE UniProtKB/Swiss-Prot
  Q3UUV3 ENTREZGENE, UniProtKB/TrEMBL
  Q8BUP8 ENTREZGENE
  Q8R231 ENTREZGENE
UniProt Secondary A4FTY9 UniProtKB/Swiss-Prot
  Q8R231 UniProtKB/Swiss-Prot