Fam43a (family with sequence similarity 43 member A) - Rat Genome Database

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Gene: Fam43a (family with sequence similarity 43 member A) Chinchilla lanigera
Analyze
Symbol: Fam43a
Name: family with sequence similarity 43 member A
RGD ID: 8720300
Description: ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: family with sequence similarity 43, member A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542014,203,879 - 14,205,165 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542014,202,955 - 14,206,087 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Fam43a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542014,203,879 - 14,205,165 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542014,202,955 - 14,206,087 (-)NCBIChiLan1.0ChiLan1.0
FAM43A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383194,685,883 - 194,689,037 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3194,685,883 - 194,689,037 (+)EnsemblGRCh38hg38GRCh38
GRCh373194,406,612 - 194,409,766 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363195,887,911 - 195,891,055 (+)NCBINCBI36Build 36hg18NCBI36
Build 343195,887,918 - 195,891,061NCBI
Celera3192,820,433 - 192,823,578 (+)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3191,784,777 - 191,787,922 (+)NCBIHuRef
CHM1_13194,369,331 - 194,372,476 (+)NCBICHM1_1
T2T-CHM13v2.03197,382,461 - 197,385,616 (+)NCBIT2T-CHM13v2.0
Fam43a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391630,418,541 - 30,421,615 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1630,418,541 - 30,421,615 (+)EnsemblGRCm39 Ensembl
GRCm381630,599,723 - 30,602,797 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1630,599,723 - 30,602,797 (+)EnsemblGRCm38mm10GRCm38
MGSCv371630,599,809 - 30,602,883 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361630,519,470 - 30,522,502 (+)NCBIMGSCv36mm8
Celera1631,114,283 - 31,117,357 (+)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.34NCBI
Fam43a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81183,633,165 - 83,636,313 (-)NCBIGRCr8
mRatBN7.21170,128,253 - 70,131,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1170,128,253 - 70,131,401 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1178,972,298 - 78,975,446 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,609,970 - 71,613,113 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01170,661,406 - 70,664,554 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01173,676,601 - 73,679,003 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,676,601 - 73,678,984 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01176,748,265 - 76,750,667 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41172,010,484 - 72,012,886 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11172,068,960 - 72,078,160 (-)NCBI
Celera11128,018 - 130,420 (+)NCBICelera
Cytogenetic Map11q22NCBI
FAM43A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22192,609,863 - 192,612,030 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13192,614,585 - 192,616,755 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03191,981,521 - 191,984,684 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13202,291,669 - 202,294,824 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3202,292,603 - 202,293,877 (+)Ensemblpanpan1.1panPan2
FAM43A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13331,070,520 - 31,073,393 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3331,070,951 - 31,073,312 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3331,101,312 - 31,103,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03331,329,672 - 31,332,254 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3331,330,856 - 31,332,208 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13331,123,619 - 31,126,204 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03331,158,810 - 31,161,371 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03331,784,902 - 31,787,487 (-)NCBIUU_Cfam_GSD_1.0
Fam43a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602124,110,293 - 124,113,397 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936711137,281 - 138,570 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936711136,411 - 139,558 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM43A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13131,663,310 - 131,665,439 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113131,662,474 - 131,665,653 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213141,266,879 - 141,269,989 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM43A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11588,771,634 - 88,774,770 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1588,772,565 - 88,773,836 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604162,460,502 - 62,463,654 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam43a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473063,205,990 - 63,207,267 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473063,205,027 - 63,208,444 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017065   ⟹   ENSCLAP00000016899
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542014,203,879 - 14,205,165 (-)Ensembl
RefSeq Acc Id: XM_005383185   ⟹   XP_005383242
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542014,202,955 - 14,206,087 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005383242 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016899.1
Reference Protein Sequences
RefSeq Acc Id: XP_005383242   ⟸   XM_005383185
- UniProtKB: A0A8C2VK70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000016899   ⟸   ENSCLAT00000017065
Protein Domains
PID


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011597 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017065.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro FAM43A/B_PTB UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PTB/PI_dom UniProtKB/TrEMBL
NCBI Gene Fam43a ENTREZGENE
PANTHER PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER UniProtKB/TrEMBL
  PROTEIN FAM43A UniProtKB/TrEMBL
Pfam PID_2 UniProtKB/TrEMBL
SMART PTB UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A8C2VK70 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Fam43a  family with sequence similarity 43 member A    family with sequence similarity 43, member A  Symbol and/or name change 5135510 APPROVED