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Gene: CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5) Chlorocebus sabaeus

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Symbol:

CACNG5

Name:

calcium voltage-gated channel auxiliary subunit gamma 5

RGD ID:

18609834

Description:

ENCODES a protein that exhibits channel regulator activity (inferred); voltage-gated calcium channel activity (inferred); INVOLVED IN regulation of AMPA receptor activity (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog); postsynaptic membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

voltage-dependent calcium channel gamma-5 subunit

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	54,561,040 - 54,612,026 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	54,561,317 - 54,569,097 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	25,599,437 - 25,654,351 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion transmembrane transport (IEA)

calcium ion transport (IEA)

neurotransmitter receptor internalization (IEA)

neurotransmitter receptor transport, postsynaptic endosome to lysosome (IEA)

positive regulation of synaptic transmission, glutamatergic (IEA)

postsynaptic neurotransmitter receptor diffusion trapping (IEA)

regulation of AMPA receptor activity (ISO)

transmission of nerve impulse (IEA)

Cellular Component

AMPA glutamate receptor complex (IEA)

glutamatergic synapse (IEA,ISO)

membrane (IEA)

postsynaptic density (ISO)

postsynaptic density membrane (IEA)

postsynaptic membrane (ISO)

Molecular Function

channel regulator activity (IEA)

protein binding (ISO)

voltage-gated calcium channel activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CACNG5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	54,561,040 - 54,612,026 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	54,561,317 - 54,569,097 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	25,599,437 - 25,654,351 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CACNG5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	66,835,117 - 66,894,751 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	66,835,117 - 66,894,751 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	64,831,235 - 64,890,868 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	62,303,913 - 62,311,819 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	62,303,912 - 62,311,561	NCBI
Celera	17	61,446,119 - 61,454,026 (+)	NCBI		Celera
Cytogenetic Map	17	q24.2	NCBI
HuRef	17	60,262,608 - 60,270,613 (+)	NCBI		HuRef
CHM1_1	17	64,937,383 - 64,945,388 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	67,710,939 - 67,770,522 (+)	NCBI		T2T-CHM13v2.0

Cacng5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	107,765,431 - 107,805,881 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	107,765,431 - 107,805,881 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	107,874,604 - 107,915,055 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	107,874,605 - 107,915,055 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	107,735,919 - 107,772,676 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	107,690,695 - 107,727,452 (-)	NCBI		MGSCv36	mm8
Celera	11	119,610,080 - 119,648,160 (-)	NCBI		Celera
Cytogenetic Map	11	E1	NCBI
cM Map	11	70.44	NCBI

Cacng5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	93,327,142 - 93,369,244 (-)	NCBI		GRCr8
mRatBN7.2	10	92,827,441 - 92,869,632 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	92,829,196 - 92,869,614 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	97,888,205 - 97,895,250 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	97,351,240 - 97,358,289 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	92,760,001 - 92,766,806 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	96,122,240 - 96,166,606 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	96,123,397 - 96,131,880 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	95,853,195 - 95,894,702 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	97,300,594 - 97,309,023 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	97,314,963 - 97,323,393 (-)	NCBI
Celera	10	91,494,396 - 91,501,201 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

Cacng5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	6,110,146 - 6,155,034 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	6,110,440 - 6,152,677 (+)	NCBI	ChiLan1.0	ChiLan1.0

CACNG5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	82,864,777 - 82,924,482 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	87,684,073 - 87,743,760 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	60,771,501 - 60,831,190 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	65,979,469 - 66,031,723 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	65,979,469 - 66,031,723 (+)	Ensembl	panpan1.1		panPan2

CACNG5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	13,575,902 - 13,587,818 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	13,578,805 - 13,615,233 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	14,470,211 - 14,509,341 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	15,238,846 - 15,278,084 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	15,238,906 - 15,278,099 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	14,186,116 - 14,225,232 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	13,308,814 - 13,347,997 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	13,310,392 - 13,349,413 (+)	NCBI		UU_Cfam_GSD_1.0

Cacng5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	12,984,674 - 13,025,336 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	6,168,904 - 6,182,787 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	6,168,186 - 6,209,924 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CACNG5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	13,288,544 - 13,328,017 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	13,288,510 - 13,328,811 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	13,660,097 - 13,696,935 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Cacng5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624870	1,517,746 - 1,569,379 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624870	1,518,813 - 1,569,395 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
53	13	17	17	17	53	13

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008012038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000002141 ⟹ ENSCSAP00000000469

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	16	54,561,317 - 54,569,097 (-)	Ensembl

RefSeq Acc Id:

XM_008012038 ⟹ XP_008010229

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	16	54,561,040 - 54,612,026 (-)	NCBI
Vero_WHO_p1.0	NW_023666077	25,599,437 - 25,654,351 (-)	NCBI

Sequence:

show sequence

GTAAGTGCTCAATAAATACTAGCTGGCATTGTTGTTCCGTTATCGTTATCATCATCATCATCAT
CCTTACTTAAAAGCAGCAGCAACAGCAGAGGCAGCAGCCCCAGCTGCTGGAATTTGAAGGTGAG
TCCGACTCCAGGCAGGGCCTCCCAGCCCGATGCGGACTCTGAAAGCCTCTCCTCTCCCACGCCA
GCCCCCAACTCTTCACCTGCCACCCCCACGAGGGTGCATACCCCAGAGGTGCTCACCTCCCGGG
CTGGGAGACAGCATCCGATCCGTACCAAACCCCGCCCGCAGCTGGTAGCGCAGGGGTGGGGAGG
CCCCGCCCTCGGCCCCGCCCCCTGCCCGCCCCTCCCTCTCGGGGTCCAGGGCGCGAGCTGCGGC
GGCGGCGGCCACGGTCACTGGCGCGGAGCGGTTCGGGCTGACTGGACGGGGCGGGCGTCCCGGG
CAGATTAGCGAGGTACCTCCCGCCCCGCGCGCCCAGCTGGCGAGGGACACTGGACCCGGGTCGG
GGGTCGCGGCCGTTCCAGCGAGAGCTGTGAGCACTGCCACCTGCTCACCCACTCTCCCTGGCCC
CAGAGCACAGTCCATGCTGGTGGGAGTGTGACAACTGGCCGCCCAGCAACAGTTCAGGAAGATG
AGTGCCTGCGGGAGGAAGGCCCTGACCCTGCTGAGCAGCGTCTTTGCTGTCTGTGGCCTGGGCC
TCCTGGGTATCGCAGTCAGCACCGACTACTGGCTGTACCTGGAGGAGGGTGTGATTGTACCCCA
GAACCAGAGCACCGAGATCAAGATGTCCCTGCACTCAGGCCTCTGGCGGGTCTGCTTCCTTGCA
GGTGAGGAGCGGGGGCGTTGCTTCACCATAGAATATGTGATGCCCATGAACACCCAGCTGACAT
CCGAGTCCACGGTCAATGTGCTGAAGATGATCCGCTCAGCCACACCATTCCCTCTGGTCAGCCT
CTTCTTCATGTTCATTGGGTTTATCCTGAGCAACATTGGACACATCCGTCCCCACCGGACAATA
CTGGCCTTTGTCTCTGGCATCTTCTTTATCCTCTCAGGCCTCTCTCTCGTGGTGGGCCTGGTGC
TCTACATCTCCAGCATCAACGACGAGATGCTCAACAGGACCAAGGACGCAGAGACCTACTTCAA
CTACAAGTATGGGTGGTCGTTTGCCTTCGCCGCCATCTCTTTCCTTTTAACGGAGAGTGCTGGG
GTGATGTCTGTGTACCTGTTCATGAAGCGGTACACCGCAGAGGACATGTACAGGCCCCACCCTG
GCTTCTACCGCCCTCGGCTGAGCAACTGCTCCGATTACTCAGGCCAGTTCCTACACCCAGACGC
CTGGGTCAGGGGCCGCAGCCCCTCCGACATCTCCAGCGAGGCCTCCCTGCAGATGAACAGCAAC
TACCCCGCCTTGCTCAAGTGCCCTGACTATGACCAGATGTCCTCTTCGCCCTGCTGAGCCTCGG
CCTCCCCCATCCCTGGACTTTGGGCGGCCAAACAACCCTTCCTGTTCTCTCCAGGTGACCCCTG
AGCCCCAGGCCTGTGGTTGACAGGCCCAGGCCACCCATGCTTAGATGTTGTCACTTGACCCCCA
TCCTCTCCGTGCTTCTCCAGAAGGGCTCTAACTGCCCCAGCGTGGGTGTGGGAGTCTGGAGTCT
GCGGGCAAGCTGATTGTCTGGCAACATGGGAGAAGCCCCGCCCATGTGAGTGCCAATCACAGCA
GTGGCTCCAGGAAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_008010229	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000000469
	ENSCSAP00000000469.1

RefSeq Acc Id:	XP_008010229 ⟸ XM_008012038
- UniProtKB:	A0A0D9QVT0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000000469 ⟸ ENSCSAT00000002141

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000004125	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000002141.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.140.150	UniProtKB/TrEMBL
InterPro	CACNG_subunit	UniProtKB/TrEMBL
	PMP22/EMP/MP20/Claudin	UniProtKB/TrEMBL
	VDCC_g5su	UniProtKB/TrEMBL
	VDCC_gsu	UniProtKB/TrEMBL
NCBI Gene	CACNG5	ENTREZGENE
PANTHER	PTHR12107:SF4	UniProtKB/TrEMBL
	VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT	UniProtKB/TrEMBL
Pfam	Claudin_2	UniProtKB/TrEMBL
PRINTS	VDCCGAMMA	UniProtKB/TrEMBL
	VDCCGAMMA5	UniProtKB/TrEMBL
UniProt	A0A0D9QVT0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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