Cacng5 (calcium voltage-gated channel auxiliary subunit gamma 5) - Rat Genome Database

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Gene: Cacng5 (calcium voltage-gated channel auxiliary subunit gamma 5) Ictidomys tridecemlineatus
Analyze
Symbol: Cacng5
Name: calcium voltage-gated channel auxiliary subunit gamma 5
RGD ID: 12471907
Description: ENCODES a protein that exhibits channel regulator activity (inferred); voltage-gated calcium channel activity (inferred); INVOLVED IN regulation of AMPA receptor activity (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog); postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium voltage-gated channel auxiliary subunit gamma 5, transcript variant X1; calcium voltage-gated channel auxiliary subunit gamma 5, transcript variant X2; voltage-dependent calcium channel gamma-5 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560212,984,674 - 13,025,336 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365416,168,904 - 6,182,787 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365416,168,186 - 6,209,924 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cacng5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560212,984,674 - 13,025,336 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365416,168,904 - 6,182,787 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365416,168,186 - 6,209,924 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381766,835,117 - 66,894,751 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1766,835,117 - 66,894,751 (+)EnsemblGRCh38hg38GRCh38
GRCh371764,831,235 - 64,890,868 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361762,303,913 - 62,311,819 (+)NCBINCBI36Build 36hg18NCBI36
Build 341762,303,912 - 62,311,561NCBI
Celera1761,446,119 - 61,454,026 (+)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1760,262,608 - 60,270,613 (+)NCBIHuRef
CHM1_11764,937,383 - 64,945,388 (+)NCBICHM1_1
T2T-CHM13v2.01767,710,939 - 67,770,522 (+)NCBIT2T-CHM13v2.0
Cacng5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911107,765,431 - 107,805,881 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11107,765,431 - 107,805,881 (-)EnsemblGRCm39 Ensembl
GRCm3811107,874,604 - 107,915,055 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11107,874,605 - 107,915,055 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711107,735,919 - 107,772,676 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611107,690,695 - 107,727,452 (-)NCBIMGSCv36mm8
Celera11119,610,080 - 119,648,160 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1170.44NCBI
Cacng5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81093,327,142 - 93,369,244 (-)NCBIGRCr8
mRatBN7.21092,827,441 - 92,869,632 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1092,829,196 - 92,869,614 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1097,888,205 - 97,895,250 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01097,351,240 - 97,358,289 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01092,760,001 - 92,766,806 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01096,122,240 - 96,166,606 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1096,123,397 - 96,131,880 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01095,853,195 - 95,894,702 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41097,300,594 - 97,309,023 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11097,314,963 - 97,323,393 (-)NCBI
Celera1091,494,396 - 91,501,201 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Cacng5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554786,110,146 - 6,155,034 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554786,110,440 - 6,152,677 (+)NCBIChiLan1.0ChiLan1.0
CACNG5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21982,864,777 - 82,924,482 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11787,684,073 - 87,743,760 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01760,771,501 - 60,831,190 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11765,979,469 - 66,031,723 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1765,979,469 - 66,031,723 (+)Ensemblpanpan1.1panPan2
CACNG5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1913,575,902 - 13,587,818 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl913,578,805 - 13,615,233 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha914,470,211 - 14,509,341 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0915,238,846 - 15,278,084 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl915,238,906 - 15,278,099 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1914,186,116 - 14,225,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0913,308,814 - 13,347,997 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0913,310,392 - 13,349,413 (+)NCBIUU_Cfam_GSD_1.0
CACNG5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1213,288,544 - 13,328,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11213,288,510 - 13,328,811 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21213,660,097 - 13,696,935 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11654,561,040 - 54,612,026 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1654,561,317 - 54,569,097 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607725,599,437 - 25,654,351 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248701,517,746 - 1,569,379 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248701,518,813 - 1,569,395 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000006155   ⟹   ENSSTOP00000005506
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365416,168,904 - 6,182,787 (-)Ensembl
RefSeq Acc Id: XM_021728417   ⟹   XP_021584092
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560212,984,674 - 13,025,336 (+)NCBI
SpeTri2.0NW_0049365416,168,186 - 6,209,924 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040268565   ⟹   XP_040124499
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560212,984,682 - 13,025,336 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021584092 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124499 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005506.2
GenBank Protein KAG3268623 (Get FASTA)   NCBI Sequence Viewer  
  KAG3268624 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021584092   ⟸   XM_021728417
- Peptide Label: isoform X2
- UniProtKB: I3M7C8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040124499   ⟸   XM_040268565
- Peptide Label: isoform X1
Ensembl Acc Id: ENSSTOP00000005506   ⟸   ENSSTOT00000006155


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006149 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006155.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro CACNG_subunit UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
  VDCC_g5su UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/TrEMBL
NCBI Gene Cacng5 ENTREZGENE
PANTHER PTHR12107:SF4 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/TrEMBL
Pfam Claudin_2 UniProtKB/TrEMBL
PRINTS VDCCGAMMA UniProtKB/TrEMBL
  VDCCGAMMA5 UniProtKB/TrEMBL
UniProt I3M7C8 ENTREZGENE, UniProtKB/TrEMBL