SELL (selectin L) - Rat Genome Database

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Pathways
Gene: SELL (selectin L) Chlorocebus sabaeus
Analyze
Symbol: SELL
Name: selectin L
RGD ID: 18603109
Description: ENCODES a protein that exhibits glycolipid binding (ortholog); INVOLVED IN cellular response to interleukin-8 (ortholog); heterotypic cell-cell adhesion (ortholog); negative regulation of leukocyte tethering or rolling (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); alcohol use disorder (ortholog); alcoholic hepatitis (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: L-selectin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap12559,958,460 - 59,979,065 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366605561,000,872 - 61,021,571 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.12559,345,080 - 59,365,684 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2559,345,069 - 59,366,946 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
JBrowse:




References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SELL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap12559,958,460 - 59,979,065 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366605561,000,872 - 61,021,571 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.12559,345,080 - 59,365,684 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2559,345,069 - 59,366,946 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
SELL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381169,690,667 - 169,711,620 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1169,690,665 - 169,712,202 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371169,659,808 - 169,680,761 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,926,432 - 167,947,461 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341166,391,465 - 166,412,385NCBI
Celera1142,769,612 - 142,790,649 (-)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1140,882,225 - 140,903,187 (-)NCBIHuRef
CHM1_11171,081,961 - 171,102,996 (-)NCBICHM1_1
T2T-CHM13v2.01169,046,455 - 169,067,407 (-)NCBIT2T-CHM13v2.0
Sell
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391163,889,556 - 163,908,354 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1163,889,551 - 163,911,750 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381164,061,987 - 164,082,930 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1164,061,982 - 164,084,181 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv371165,992,207 - 166,010,916 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361165,898,779 - 165,917,346 (+)NCBIMGSCv36mm8
Celera1166,503,711 - 166,522,465 (+)NCBICelera
Cytogenetic Map1H2.2NCBI
cM Map171.37NCBI
Sell
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81378,950,100 - 78,969,604 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1378,950,015 - 78,969,600 (+)EnsemblGRCr8
mRatBN7.21376,416,969 - 76,436,444 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1376,416,915 - 76,436,456 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1379,035,789 - 79,053,737 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01380,339,838 - 80,357,792 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01377,594,427 - 77,612,381 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1378,336,877 - 78,354,825 (+)NCBI
Lyon_Normotensive1378,544,830 - 78,562,778 (+)NCBI
Lyon_Hypertensive1378,484,367 - 78,502,315 (+)NCBI
F344_StmMcwi1378,543,968 - 78,561,916 (+)NCBI
Rnor_6.01382,369,820 - 82,387,774 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1382,369,493 - 82,387,631 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01387,249,243 - 87,267,197 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41379,827,342 - 79,845,296 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1376,150,815 - 76,168,775 (+)NCBICelera
RGSC_v3.11379,841,529 - 79,859,484 (+)NCBI
Cytogenetic Map13q23NCBI
Sell
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554627,591,366 - 7,612,846 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554627,591,997 - 7,611,408 (+)NCBIChiLan1.0ChiLan1.0
SELL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2180,057,232 - 80,078,252 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1179,725,636 - 79,746,670 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01145,173,700 - 145,194,927 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,895,373 - 148,916,393 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,895,373 - 148,916,393 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
SELL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1728,906,752 - 28,927,959 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl728,906,809 - 29,094,008 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha728,438,413 - 28,459,659 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0728,708,675 - 28,729,947 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl728,708,712 - 28,731,608 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1728,556,811 - 28,578,018 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0728,592,509 - 28,613,744 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0728,829,481 - 28,850,708 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sell
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1104,598,289 - 4,632,105 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934499,171,899 - 99,194,147 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648117,022,580 - 17,032,124 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648117,022,421 - 17,032,105 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl481,306,353 - 81,326,444 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1481,306,363 - 81,325,296 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2488,931,520 - 88,950,362 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sell
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248267,590,576 - 7,612,370 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046248267,587,970 - 7,610,163 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Sell
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11043,293,043 - 43,312,327 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in SELL
549 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007989572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JBLKOC010000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000009379   ⟹   ENSCSAP00000007491
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2559,345,069 - 59,366,946 (+)Ensembl
RefSeq Acc Id: XM_007989572   ⟹   XP_007987763
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
mChlSab1.0.hap12559,958,460 - 59,979,065 (+)NCBI
Vero_WHO_p1.0NW_02366605561,000,872 - 61,021,571 (+)NCBI
ChlSab1.12559,345,080 - 59,365,684 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007987763 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007491.1
RefSeq Acc Id: XP_007987763   ⟸   XM_007989572
- UniProtKB: A0A0D9RFV2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000007491   ⟸   ENSCSAT00000009379


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011287 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009379.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  Compl-Cell_Adhes-Reg UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  L-selectin UniProtKB/TrEMBL
  Selectin_CTLD UniProtKB/TrEMBL
  Selectin_superfamily UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
KEGG Report csab:103230617 UniProtKB/TrEMBL
NCBI Gene SELL ENTREZGENE
PANTHER COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING UniProtKB/TrEMBL
  L-SELECTIN UniProtKB/TrEMBL
Pfam EGF UniProtKB/TrEMBL
  Lectin_C UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
PIRSF L-selectin UniProtKB/TrEMBL
PRINTS SELECTIN UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
  CLECT UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF56436 UniProtKB/TrEMBL
  SSF57535 UniProtKB/TrEMBL
UniProt A0A0D9RFV2 ENTREZGENE, UniProtKB/TrEMBL