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Gene: CCDC172 (coiled-coil domain containing 172) Chlorocebus sabaeus

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Symbol:

CCDC172

Name:

coiled-coil domain containing 172

RGD ID:

18574217

Description:

ASSOCIATED WITH Meckel syndrome (ortholog); syndromic microphthalmia 11 (ortholog); FOUND IN sperm midpiece (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 172

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	109,138,300 - 109,192,883 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	109,139,390 - 109,192,198 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	70,382,691 - 70,436,839 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CCDC172	Green Monkey	Meckel syndrome		ISO	CCDC172 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Meckel-Gruber syndrome	ClinVar
CCDC172	Green Monkey	syndromic microphthalmia 11		ISO	CCDC172 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Microphthalmia and syndromic 11	ClinVar	PMID:28492532

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CCDC172	Green Monkey	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	150520179		UniProt	GO_REF:0000043
CCDC172	Green Monkey	cytoplasm	located_in	IEA	PANTHER:PTN000499985	150520179		TreeGrafter	GO_REF:0000118
CCDC172	Green Monkey	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	150520179		UniProt	GO_REF:0000044
CCDC172	Green Monkey	cytoplasm	located_in	IEA	UniProtKB:Q810N9 and ensembl:ENSMUSP00000068972	150520179		Ensembl	GO_REF:0000107
CCDC172	Green Monkey	sperm midpiece	located_in	ISO	Ccdc172 (Rattus norvegicus)	9068941	PMID:24394471	UniProt	PMID:24394471 and REF_RGD_ID:12903238

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CCDC172	Green Monkey	protein binding	enables	ISO	UniProtKB:D3DUQ6 more ...	9068941	PMID:25416956	IntAct	PMID:25416956
CCDC172	Green Monkey	protein binding	enables	ISO	UniProtKB:Q13561 more ...	9068941	PMID:31515488	IntAct	PMID:31515488
CCDC172	Green Monkey	protein binding	enables	ISO	UniProtKB:A0A0S2Z528 more ...	9068941	PMID:26871637	IntAct	PMID:26871637
CCDC172	Green Monkey	protein binding	enables	ISO	UniProtKB:A6NI15 more ...	9068941	PMID:32296183	IntAct	PMID:32296183

PMID:30032202

CCDC172
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	109,138,300 - 109,192,883 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	109,139,390 - 109,192,198 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	70,382,691 - 70,436,839 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CCDC172
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	116,324,448 - 116,380,029 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	116,324,448 - 116,380,029 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	118,083,960 - 118,139,541 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	118,073,930 - 118,129,531 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	10	111,813,149 - 111,868,738 (+)	NCBI		Celera
Cytogenetic Map	10	q25.3	NCBI
HuRef	10	111,711,013 - 111,766,601 (+)	NCBI		HuRef
CHM1_1	10	118,367,061 - 118,422,663 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	117,218,440 - 117,274,006 (+)	NCBI		T2T-CHM13v2.0

Ccdc172
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	58,500,416 - 58,546,504 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	58,500,424 - 58,541,517 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	58,511,985 - 58,553,104 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	58,511,993 - 58,553,085 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	58,586,492 - 58,627,575 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	58,565,272 - 58,614,636 (+)	NCBI		MGSCv36	mm8
Celera	19	60,708,402 - 60,749,413 (+)	NCBI		Celera
Cytogenetic Map	19	D2	NCBI
cM Map	19	54.35	NCBI

Ccdc172
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	267,615,341 - 267,661,568 (+)	NCBI		GRCr8
mRatBN7.2	1	257,629,188 - 257,682,373 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	257,629,208 - 257,675,247 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	265,840,754 - 265,883,755 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	272,546,781 - 272,589,782 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	265,183,723 - 265,226,993 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	279,633,655 - 279,699,234 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	279,633,671 - 279,676,909 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	286,995,694 - 287,041,588 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	264,938,299 - 264,981,620 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	265,149,399 - 265,192,664 (+)	NCBI
Celera	1	253,289,322 - 253,332,261 (+)	NCBI		Celera
Cytogenetic Map	1	q55	NCBI

Ccdc172
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	21,109,547 - 21,183,019 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	21,099,475 - 21,193,932 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC172
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	128,200,331 - 128,255,951 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	128,205,669 - 128,261,289 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	112,870,502 - 112,968,853 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	116,345,818 - 116,401,441 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	116,345,394 - 116,401,441 (+)	Ensembl	panpan1.1		panPan2

CCDC172
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	26,953,945 - 27,013,600 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	26,954,022 - 27,011,998 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	27,105,361 - 27,164,170 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	27,492,277 - 27,549,933 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	27,490,237 - 27,549,923 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	27,045,779 - 27,104,626 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	27,058,801 - 27,117,626 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	27,255,186 - 27,312,795 (+)	NCBI		UU_Cfam_GSD_1.0

Ccdc172
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	19,183,318 - 19,256,245 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	6,305,419 - 6,375,038 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	6,305,419 - 6,376,514 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC172
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	126,549,331 - 126,636,518 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	126,549,112 - 126,637,606 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	137,796,839 - 137,848,235 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Ccdc172
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	30,200,650 - 30,274,521 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	30,200,723 - 30,274,559 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in CCDC172
1408 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system
20	18	18	18	20


RefSeq Transcripts	XM_007964184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007964185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007964186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007964187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038009586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000002906 ⟹ ENSCSAP00000001198

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	9	109,139,390 - 109,192,198 (+)	Ensembl

RefSeq Acc Id:

XM_038009586 ⟹ XP_037865514

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666048	70,382,691 - 70,436,839 (+)	NCBI


Protein RefSeqs	XP_037865514	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000001198.1

Ensembl Acc Id:

ENSCSAP00000001198 ⟸ ENSCSAT00000002906

RefSeq Acc Id:	XP_037865514 ⟸ XM_038009586
- UniProtKB:	A0A0D9QXV9 (UniProtKB/TrEMBL)

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000004877	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000002906.1	UniProtKB/TrEMBL
InterPro	CCDC172	UniProtKB/TrEMBL
KEGG Report	csab:103216565	UniProtKB/TrEMBL
NCBI Gene	CCDC172	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 172	UniProtKB/TrEMBL
	PTHR22419	UniProtKB/TrEMBL
UniProt	A0A0D9QXV9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar