TEF (TEF transcription factor, PAR bZIP family member) - Rat Genome Database

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Gene: TEF (TEF transcription factor, PAR bZIP family member) Chlorocebus sabaeus
Analyze
Symbol: TEF
Name: TEF transcription factor, PAR bZIP family member
RGD ID: 18574173
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); Rubinstein-Taybi syndrome (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TEF, PAR bZIP transcription factor; thyrotroph embryonic factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11923,910,015 - 23,939,935 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1923,910,119 - 23,940,043 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045101,479,795 - 101,510,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TEF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11923,910,015 - 23,939,935 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1923,910,119 - 23,940,043 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045101,479,795 - 101,510,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TEF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,367,455 - 41,399,326 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,367,333 - 41,399,326 (+)EnsemblGRCh38hg38GRCh38
GRCh372241,763,459 - 41,795,330 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,107,909 - 40,125,276 (+)NCBINCBI36Build 36hg18NCBI36
Build 342240,102,462 - 40,119,828NCBI
Celera2225,569,791 - 25,601,729 (+)NCBICelera
Cytogenetic Map22q13.2ENTREZGENE
HuRef2224,729,737 - 24,761,736 (+)NCBIHuRef
CHM1_12241,723,259 - 41,755,245 (+)NCBICHM1_1
T2T-CHM13v2.02241,846,283 - 41,878,148 (+)NCBIT2T-CHM13v2.0
Tef
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,686,874 - 81,711,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,686,622 - 81,711,064 (+)EnsemblGRCm39 Ensembl
GRCm381581,802,673 - 81,826,863 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,802,421 - 81,826,863 (+)EnsemblGRCm38mm10GRCm38
MGSCv371581,633,103 - 81,657,293 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361581,630,072 - 81,654,118 (+)NCBIMGSCv36mm8
Celera1583,921,481 - 83,945,730 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.25NCBI
Tef
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,197,180 - 115,221,930 (+)NCBIGRCr8
mRatBN7.27113,317,191 - 113,341,783 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,317,283 - 113,341,783 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7115,089,146 - 115,104,243 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,312,643 - 117,327,740 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,282,081 - 117,297,178 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,033,971 - 123,058,606 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,043,503 - 123,058,604 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07123,005,635 - 123,034,385 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47120,164,881 - 120,179,984 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17120,199,287 - 120,211,043 (+)NCBI
Celera7109,645,394 - 109,660,497 (+)NCBICelera
Cytogenetic Map7q34NCBI
Tef
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541326,956,285 - 26,979,045 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541326,956,285 - 26,978,734 (+)NCBIChiLan1.0ChiLan1.0
TEF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,199,380 - 51,231,981 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12253,899,206 - 53,931,265 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,263,607 - 22,295,750 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,350,470 - 40,382,724 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2240,348,770 - 40,382,724 (+)Ensemblpanpan1.1panPan2
TEF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,852,551 - 23,878,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,838,788 - 23,878,190 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,785,052 - 23,810,494 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,597,068 - 24,622,524 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,579,743 - 24,622,510 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11024,313,806 - 24,339,243 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,634,699 - 24,660,129 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,809,157 - 24,834,606 (-)NCBIUU_Cfam_GSD_1.0
Tef
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,495,566 - 7,517,734 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936492505,906 - 528,384 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936492505,978 - 528,087 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl57,119,359 - 7,144,498 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.157,119,354 - 7,135,171 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Tef
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247527,159,362 - 7,186,022 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247527,159,791 - 7,186,043 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000003853   ⟹   ENSCSAP00000002123
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1923,910,119 - 23,940,043 (+)Ensembl
RefSeq Acc Id: XM_007975905   ⟹   XP_007974096
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11923,923,975 - 23,939,935 (+)NCBI
Vero_WHO_p1.0NW_023666045101,479,795 - 101,495,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975906   ⟹   XP_007974097
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11923,910,015 - 23,939,935 (+)NCBI
Vero_WHO_p1.0NW_023666045101,479,795 - 101,510,399 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007974096 (Get FASTA)   NCBI Sequence Viewer  
  XP_007974097 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002123
  ENSCSAP00000002123.1
RefSeq Acc Id: XP_007974097   ⟸   XM_007975906
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R0I4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007974096   ⟸   XM_007975905
- Peptide Label: isoform X1
Ensembl Acc Id: ENSCSAP00000002123   ⟸   ENSCSAT00000003853


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005816 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003853.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro bZIP UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
  PAR_bZIP UniProtKB/TrEMBL
NCBI Gene TEF ENTREZGENE
PANTHER PTHR11988 UniProtKB/TrEMBL
  PTHR11988:SF24 UniProtKB/TrEMBL
Pfam bZIP_2 UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/TrEMBL
UniProt A0A0D9R0I4 ENTREZGENE, UniProtKB/TrEMBL