Tef (thyrotroph embryonic factor) - Rat Genome Database

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Gene: Tef (thyrotroph embryonic factor) Mus musculus
Analyze
Symbol: Tef
Name: thyrotroph embryonic factor
RGD ID: 735649
MGI Page MGI
Description: Enables double-stranded DNA binding activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in brain; early conceptus; genitourinary system; and trunk somite. Orthologous to human TEF (TEF transcription factor, PAR bZIP family member).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310028D20Rik; thyrotrophic embryonic factor
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,686,874 - 81,711,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,686,622 - 81,711,064 (+)EnsemblGRCm39 Ensembl
GRCm381581,802,673 - 81,826,863 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,802,421 - 81,826,863 (+)EnsemblGRCm38mm10GRCm38
MGSCv371581,633,103 - 81,657,293 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361581,630,072 - 81,654,118 (+)NCBIMGSCv36mm8
Celera1583,921,481 - 83,945,730 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
8-Br-cAMP  (ISO)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP)
amiodarone  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (ISO)
butanal  (ISO)
C60 fullerene  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chenodeoxycholic acid  (EXP)
chlordecone  (EXP)
chloroprene  (EXP,ISO)
choline  (EXP)
chrysene  (EXP)
clobetasol  (EXP)
clothianidin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (EXP)
dexamethasone  (EXP)
dibenz[a,h]anthracene  (EXP)
dibutyl phthalate  (EXP)
dichloroacetic acid  (EXP)
dichloromethane  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
Erionite  (EXP)
ethanol  (EXP)
fipronil  (ISO)
fluoranthene  (EXP)
folic acid  (EXP)
gentamycin  (ISO)
graphene oxide  (EXP)
ketamine  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
levofloxacin  (ISO)
methamphetamine  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
pentanal  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (EXP)
rac-lactic acid  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP)
styrene  (EXP)
sunitinib  (ISO)
tetrachloromethane  (ISO)
tetraphene  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
tremolite asbestos  (EXP)
tributylstannane  (EXP)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

References

References - curated
# Reference Title Reference Citation
1. TEF, a transcription factor expressed specifically in the anterior pituitary during embryogenesis, defines a new class of leucine zipper proteins. Drolet DW, etal., Genes Dev 1991 Oct;5(10):1739-53.
2. cDNA cloning and characterization of Npap60: a novel rat nuclear pore-associated protein with an unusual subcellular localization during male germ cell differentiation. Fan F, etal., Genomics 1997 Mar 15;40(3):444-53.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Characterization of the murine mafF gene. Onodera K, etal., J Biol Chem 1999 Jul 23;274(30):21162-9.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7550318   PMID:7835883   PMID:7903570   PMID:8617210   PMID:8661743   PMID:8827514   PMID:9196007   PMID:9226367   PMID:9339368   PMID:9756919   PMID:9789033   PMID:10341080  
PMID:10349636   PMID:10799536   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12791695   PMID:14702338   PMID:15175240   PMID:15181539   PMID:15306695   PMID:15489334  
PMID:15618518   PMID:15747579   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16814730   PMID:18287559   PMID:19219069   PMID:19721697   PMID:19805330   PMID:20059953   PMID:20074527  
PMID:20211142   PMID:20412781   PMID:20686175   PMID:21347262   PMID:21383142   PMID:21857934   PMID:21873635   PMID:22753645   PMID:23375831   PMID:24200680   PMID:24952961   PMID:26332085  
PMID:27899360   PMID:29024662   PMID:30515906   PMID:32979312   PMID:33452134   PMID:36749029  


Genomics

Comparative Map Data
Tef
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,686,874 - 81,711,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,686,622 - 81,711,064 (+)EnsemblGRCm39 Ensembl
GRCm381581,802,673 - 81,826,863 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,802,421 - 81,826,863 (+)EnsemblGRCm38mm10GRCm38
MGSCv371581,633,103 - 81,657,293 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361581,630,072 - 81,654,118 (+)NCBIMGSCv36mm8
Celera1583,921,481 - 83,945,730 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.25NCBI
TEF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,367,455 - 41,399,326 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,367,333 - 41,399,326 (+)EnsemblGRCh38hg38GRCh38
GRCh372241,763,459 - 41,795,330 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,107,909 - 40,125,276 (+)NCBINCBI36Build 36hg18NCBI36
Build 342240,102,462 - 40,119,828NCBI
Celera2225,569,791 - 25,601,729 (+)NCBICelera
Cytogenetic Map22q13.2ENTREZGENE
HuRef2224,729,737 - 24,761,736 (+)NCBIHuRef
CHM1_12241,723,259 - 41,755,245 (+)NCBICHM1_1
T2T-CHM13v2.02241,846,283 - 41,878,148 (+)NCBIT2T-CHM13v2.0
Tef
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,197,180 - 115,221,930 (+)NCBIGRCr8
mRatBN7.27113,317,191 - 113,341,783 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,317,283 - 113,341,783 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7115,089,146 - 115,104,243 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,312,643 - 117,327,740 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,282,081 - 117,297,178 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,033,971 - 123,058,606 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,043,503 - 123,058,604 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07123,005,635 - 123,034,385 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47120,164,881 - 120,179,984 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17120,199,287 - 120,211,043 (+)NCBI
Celera7109,645,394 - 109,660,497 (+)NCBICelera
Cytogenetic Map7q34NCBI
Tef
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541326,956,285 - 26,979,045 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541326,956,285 - 26,978,734 (+)NCBIChiLan1.0ChiLan1.0
TEF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,199,380 - 51,231,981 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12253,899,206 - 53,931,265 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,263,607 - 22,295,750 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,350,470 - 40,382,724 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2240,348,770 - 40,382,724 (+)Ensemblpanpan1.1panPan2
TEF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,852,551 - 23,878,353 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,838,788 - 23,878,190 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,785,052 - 23,810,494 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,597,068 - 24,622,524 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,579,743 - 24,622,510 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11024,313,806 - 24,339,243 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,634,699 - 24,660,129 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,809,157 - 24,834,606 (-)NCBIUU_Cfam_GSD_1.0
Tef
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,495,566 - 7,517,734 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936492505,906 - 528,384 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936492505,978 - 528,087 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl57,119,359 - 7,144,498 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.157,119,354 - 7,135,171 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TEF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11923,910,015 - 23,939,935 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1923,910,119 - 23,940,043 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045101,479,795 - 101,510,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tef
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247527,159,362 - 7,186,022 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247527,159,791 - 7,186,043 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tef
834 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3920
Count of miRNA genes:833
Interacting mature miRNAs:1141
Transcripts:ENSMUST00000023024, ENSMUST00000109553, ENSMUST00000164673, ENSMUST00000166302, ENSMUST00000167138, ENSMUST00000168200, ENSMUST00000168632, ENSMUST00000169952, ENSMUST00000170027, ENSMUST00000172208
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse

Markers in Region
RH141466  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381581,816,317 - 81,816,440UniSTSGRCm38
MGSCv371581,646,747 - 81,646,870UniSTSGRCm37
Celera1583,935,125 - 83,935,248UniSTS
Cytogenetic Map15E1UniSTS
cM Map1546.7UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_017376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006520744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011245560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF194420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY540631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY540632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP764162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY296040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY336350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY467729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000023024   ⟹   ENSMUSP00000023024
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,695,615 - 81,710,899 (+)Ensembl
GRCm38.p6 Ensembl1581,811,414 - 81,826,698 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109553   ⟹   ENSMUSP00000105180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,686,622 - 81,711,064 (+)Ensembl
GRCm38.p6 Ensembl1581,802,421 - 81,826,863 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,686,938 - 81,701,213 (+)Ensembl
GRCm38.p6 Ensembl1581,802,737 - 81,817,012 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,686,908 - 81,690,250 (+)Ensembl
GRCm38.p6 Ensembl1581,802,707 - 81,806,049 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167138
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,704,794 - 81,705,584 (+)Ensembl
GRCm38.p6 Ensembl1581,820,593 - 81,821,383 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168200   ⟹   ENSMUSP00000132026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,695,247 - 81,705,457 (+)Ensembl
GRCm38.p6 Ensembl1581,811,046 - 81,821,256 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168632
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,705,144 - 81,707,980 (+)Ensembl
GRCm38.p6 Ensembl1581,820,943 - 81,823,779 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,687,027 - 81,690,112 (+)Ensembl
GRCm38.p6 Ensembl1581,802,826 - 81,805,911 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170027
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,686,931 - 81,689,555 (+)Ensembl
GRCm38.p6 Ensembl1581,802,730 - 81,805,354 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172208   ⟹   ENSMUSP00000129748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1581,696,360 - 81,699,410 (+)Ensembl
GRCm38.p6 Ensembl1581,812,159 - 81,815,209 (+)Ensembl
RefSeq Acc Id: NM_017376   ⟹   NP_059072
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,695,615 - 81,711,064 (+)NCBI
GRCm381581,811,414 - 81,826,863 (+)NCBI
MGSCv371581,633,103 - 81,657,293 (+)RGD
Celera1583,921,481 - 83,945,730 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_153484   ⟹   NP_705617
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,686,874 - 81,711,064 (+)NCBI
GRCm381581,802,673 - 81,826,863 (+)ENTREZGENE
MGSCv371581,633,103 - 81,657,293 (+)RGD
Celera1583,921,481 - 83,945,730 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006520744   ⟹   XP_006520807
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,695,244 - 81,711,064 (+)NCBI
GRCm381581,811,043 - 81,826,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011245557   ⟹   XP_011243859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,695,244 - 81,711,064 (+)NCBI
GRCm381581,811,067 - 81,826,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011245558   ⟹   XP_011243860
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,686,916 - 81,711,064 (+)NCBI
GRCm381581,802,684 - 81,826,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011245559   ⟹   XP_011243861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,696,002 - 81,711,064 (+)NCBI
GRCm381581,811,812 - 81,826,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011245560   ⟹   XP_011243862
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,695,244 - 81,711,064 (+)NCBI
GRCm381581,811,043 - 81,826,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248460   ⟹   XP_030104320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,696,002 - 81,711,064 (+)NCBI
GRCm381581,811,812 - 81,826,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030248461   ⟹   XP_030104321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,695,413 - 81,711,064 (+)NCBI
GRCm381581,811,228 - 81,826,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159315   ⟹   XP_036015208
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,703,900 - 81,711,064 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159316   ⟹   XP_036015209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391581,695,250 - 81,711,064 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_059072 (Get FASTA)   NCBI Sequence Viewer  
  NP_705617 (Get FASTA)   NCBI Sequence Viewer  
  XP_006520807 (Get FASTA)   NCBI Sequence Viewer  
  XP_011243859 (Get FASTA)   NCBI Sequence Viewer  
  XP_011243860 (Get FASTA)   NCBI Sequence Viewer  
  XP_011243861 (Get FASTA)   NCBI Sequence Viewer  
  XP_011243862 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104320 (Get FASTA)   NCBI Sequence Viewer  
  XP_030104321 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015208 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015209 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF70830 (Get FASTA)   NCBI Sequence Viewer  
  AAH17689 (Get FASTA)   NCBI Sequence Viewer  
  AAH23410 (Get FASTA)   NCBI Sequence Viewer  
  AAH36982 (Get FASTA)   NCBI Sequence Viewer  
  AAS45599 (Get FASTA)   NCBI Sequence Viewer  
  AAS45600 (Get FASTA)   NCBI Sequence Viewer  
  BAC35849 (Get FASTA)   NCBI Sequence Viewer  
  BAE20622 (Get FASTA)   NCBI Sequence Viewer  
  BAE24760 (Get FASTA)   NCBI Sequence Viewer  
  BAE26249 (Get FASTA)   NCBI Sequence Viewer  
  BAE28255 (Get FASTA)   NCBI Sequence Viewer  
  BAE32609 (Get FASTA)   NCBI Sequence Viewer  
  EDL04556 (Get FASTA)   NCBI Sequence Viewer  
  EDL04557 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000023024
  ENSMUSP00000023024.8
  ENSMUSP00000105180
  ENSMUSP00000105180.3
  ENSMUSP00000129748.2
  ENSMUSP00000132026.2
GenBank Protein Q9JLC6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_705617   ⟸   NM_153484
- Peptide Label: isoform 2
- UniProtKB: Q3V3B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_059072   ⟸   NM_017376
- Peptide Label: isoform 1
- UniProtKB: Q8C6I0 (UniProtKB/Swiss-Prot),   Q6QHT6 (UniProtKB/Swiss-Prot),   Q3URC8 (UniProtKB/Swiss-Prot),   Q3UM49 (UniProtKB/Swiss-Prot),   Q3UGF4 (UniProtKB/Swiss-Prot),   Q3U426 (UniProtKB/Swiss-Prot),   Q8VD02 (UniProtKB/Swiss-Prot),   Q9JLC6 (UniProtKB/Swiss-Prot),   Q3V3B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006520807   ⟸   XM_006520744
- Peptide Label: isoform X4
- UniProtKB: Q3V3B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011243860   ⟸   XM_011245558
- Peptide Label: isoform X2
- UniProtKB: Q3V3B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011243862   ⟸   XM_011245560
- Peptide Label: isoform X3
- UniProtKB: Q3V3B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011243859   ⟸   XM_011245557
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011243861   ⟸   XM_011245559
- Peptide Label: isoform X3
- UniProtKB: Q3V3B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030104321   ⟸   XM_030248461
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030104320   ⟸   XM_030248460
- Peptide Label: isoform X4
- UniProtKB: Q3V3B6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000129748   ⟸   ENSMUST00000172208
RefSeq Acc Id: ENSMUSP00000023024   ⟸   ENSMUST00000023024
RefSeq Acc Id: ENSMUSP00000105180   ⟸   ENSMUST00000109553
RefSeq Acc Id: ENSMUSP00000132026   ⟸   ENSMUST00000168200
RefSeq Acc Id: XP_036015209   ⟸   XM_036159316
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036015208   ⟸   XM_036159315
- Peptide Label: isoform X5
Protein Domains
bZIP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JLC6-F1-model_v2 AlphaFold Q9JLC6 1-301 view protein structure

Promoters
RGD ID:6826542
Promoter ID:MM_KWN:19167
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   BoneMarrow_0Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:UC007WXG.1,   UC007WXH.1,   UC007WXI.1,   UC007WXJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361581,632,899 - 81,633,399 (+)MPROMDB
RGD ID:6826531
Promoter ID:MM_KWN:19168
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC007WXK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361581,640,971 - 81,642,397 (+)MPROMDB
RGD ID:6848663
Promoter ID:MM_TRO:3620
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver
Transcripts:MTR000060.15.1264.5
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361581,645,421 - 81,645,921 (+)MPROMDB
RGD ID:6826533
Promoter ID:MM_KWN:19169
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:UC007WXL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361581,650,171 - 81,650,822 (+)MPROMDB
RGD ID:6848665
Promoter ID:MM_TRO:3621
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:MTR000060.15.1264.7
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361581,656,871 - 81,657,371 (+)MPROMDB
RGD ID:8684456
Promoter ID:EPDNEW_M20258
Type:initiation region
Name:Tef_2
Description:Mus musculus thyrotroph embryonic factor , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20259  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381581,802,743 - 81,802,803EPDNEW
RGD ID:8684458
Promoter ID:EPDNEW_M20259
Type:multiple initiation site
Name:Tef_1
Description:Mus musculus thyrotroph embryonic factor , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20258  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381581,811,470 - 81,811,530EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98663 AgrOrtholog
Ensembl Genes ENSMUSG00000022389 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023024 ENTREZGENE
  ENSMUST00000023024.8 UniProtKB/Swiss-Prot
  ENSMUST00000109553 ENTREZGENE
  ENSMUST00000109553.10 UniProtKB/Swiss-Prot
  ENSMUST00000168200.2 UniProtKB/TrEMBL
  ENSMUST00000172208.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro bZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  bZIP_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PAR_bZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:21685 UniProtKB/Swiss-Prot
MGD MGI:98663 ENTREZGENE
NCBI Gene 21685 ENTREZGENE
PANTHER PTHR11988 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11988:SF24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam bZIP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tef PhenoGen
PROSITE BZIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BRLZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9Q331_MOUSE UniProtKB/TrEMBL
  E9Q3N8_MOUSE UniProtKB/TrEMBL
  Q3U426 ENTREZGENE
  Q3UGF4 ENTREZGENE
  Q3UM49 ENTREZGENE
  Q3URC8 ENTREZGENE
  Q3V3B6 ENTREZGENE, UniProtKB/TrEMBL
  Q6QHT6 ENTREZGENE
  Q8C6I0 ENTREZGENE
  Q8R1Q1_MOUSE UniProtKB/TrEMBL
  Q8VD02 ENTREZGENE
  Q9JLC6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3U426 UniProtKB/Swiss-Prot
  Q3UGF4 UniProtKB/Swiss-Prot
  Q3UM49 UniProtKB/Swiss-Prot
  Q3URC8 UniProtKB/Swiss-Prot
  Q6QHT6 UniProtKB/Swiss-Prot
  Q8C6I0 UniProtKB/Swiss-Prot
  Q8VD02 UniProtKB/Swiss-Prot