CDCA2 (cell division cycle associated 2) - Rat Genome Database

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Gene: CDCA2 (cell division cycle associated 2) Chlorocebus sabaeus
Analyze
Symbol: CDCA2
Name: cell division cycle associated 2
RGD ID: 18562057
Description: INVOLVED IN chromosome segregation (ortholog); positive regulation of protein dephosphorylation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2E (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell division cycle-associated protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1823,582,062 - 23,631,590 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl823,582,744 - 23,632,045 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605218,535,616 - 18,584,889 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CDCA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1823,582,062 - 23,631,590 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl823,582,744 - 23,632,045 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605218,535,616 - 18,584,889 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CDCA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38825,458,931 - 25,507,917 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl825,459,199 - 25,507,911 (+)EnsemblGRCh38hg38GRCh38
GRCh37825,316,447 - 25,365,433 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36825,372,428 - 25,421,342 (+)NCBINCBI36Build 36hg18NCBI36
Build 34825,372,429 - 25,421,342NCBI
Celera824,278,060 - 24,326,920 (+)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef823,861,484 - 23,910,346 (+)NCBIHuRef
CHM1_1825,517,979 - 25,566,826 (+)NCBICHM1_1
T2T-CHM13v2.0825,734,151 - 25,783,086 (+)NCBIT2T-CHM13v2.0
Cdca2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391467,910,629 - 67,953,290 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1467,913,780 - 67,953,290 (-)EnsemblGRCm39 Ensembl
GRCm381467,673,180 - 67,715,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1467,676,331 - 67,715,841 (-)EnsemblGRCm38mm10GRCm38
MGSCv371468,294,411 - 68,333,898 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361466,629,951 - 66,660,755 (-)NCBIMGSCv36mm8
Celera1465,433,981 - 65,473,487 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.66NCBI
Cdca2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81546,071,360 - 46,117,524 (-)NCBIGRCr8
mRatBN7.21541,895,946 - 41,942,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,895,901 - 41,941,611 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1543,760,646 - 43,806,313 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,910,867 - 44,956,534 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01543,356,180 - 43,401,847 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01544,365,396 - 44,411,601 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1544,365,405 - 44,411,004 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01547,185,590 - 47,231,348 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41547,225,711 - 47,271,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11547,241,861 - 47,287,342 (-)NCBI
Celera1541,559,981 - 41,605,879 (-)NCBICelera
Cytogenetic Map15p12NCBI
Cdca2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540348,375,287 - 48,419,955 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540348,374,276 - 48,417,130 (+)NCBIChiLan1.0ChiLan1.0
CDCA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2743,998,888 - 44,049,042 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1819,713,275 - 19,763,433 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0824,739,705 - 24,788,898 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1821,648,782 - 21,697,584 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl821,650,086 - 21,697,584 (+)Ensemblpanpan1.1panPan2
CDCA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12531,943,649 - 31,997,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2531,947,094 - 31,996,022 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2532,528,674 - 32,582,189 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02532,142,593 - 32,196,409 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2532,145,921 - 32,195,032 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12532,098,317 - 32,152,106 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02531,947,903 - 32,001,606 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02532,113,782 - 32,166,984 (-)NCBIUU_Cfam_GSD_1.0
Cdca2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049439,940,250 - 9,997,577 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367571,195,567 - 1,248,237 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367571,195,604 - 1,249,367 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDCA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl149,518,201 - 9,566,588 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1149,517,763 - 9,571,303 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21410,682,849 - 10,731,706 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cdca2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475820,491,118 - 20,538,653 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475820,490,902 - 20,537,171 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 7 18 12
Below cutoff 29 2 48

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000014171   ⟹   ENSCSAP00000012150
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl823,582,744 - 23,632,045 (+)Ensembl
RefSeq Acc Id: XM_007961965   ⟹   XP_007960156
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1823,582,507 - 23,631,590 (+)NCBI
Vero_WHO_p1.0NW_02366605218,535,616 - 18,584,889 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007961966   ⟹   XP_007960157
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1823,582,525 - 23,631,590 (+)NCBI
Vero_WHO_p1.0NW_02366605218,535,616 - 18,584,844 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007960156 (Get FASTA)   NCBI Sequence Viewer  
  XP_007960157 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012150.1
Reference Protein Sequences
RefSeq Acc Id: XP_007960156   ⟸   XM_007961965
- UniProtKB: A0A0D9RU61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007960157   ⟸   XM_007961966
- UniProtKB: A0A0D9RU61 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000012150   ⟸   ENSCSAT00000014171


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016076 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014171.1 UniProtKB/TrEMBL
InterPro PP1-bd UniProtKB/TrEMBL
KEGG Report csab:103215504 UniProtKB/TrEMBL
NCBI Gene CDCA2 ENTREZGENE
PANTHER ANTIGEN KI-67-LIKE PROTEIN UniProtKB/TrEMBL
  PTHR21603:SF16 UniProtKB/TrEMBL
Pfam PP1_bind UniProtKB/TrEMBL
UniProt A0A0D9RU61 ENTREZGENE, UniProtKB/TrEMBL