CFAP418 (cilia and flagella associated protein 418) - Rat Genome Database

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Gene: CFAP418 (cilia and flagella associated protein 418) Chlorocebus sabaeus
Analyze
Symbol: CFAP418
Name: cilia and flagella associated protein 418
RGD ID: 18558550
Description: INVOLVED IN photoreceptor cell morphogenesis (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome 21 (ortholog); cone-rod dystrophy (ortholog); cone-rod dystrophy 16 (ortholog); FOUND IN cell junction (ortholog); ciliary base (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C8H8orf37; chromosome 8 open reading frame, human C8orf37; chromosome unknown C8orf37 homolog; CUNH8orf37; protein C8orf37 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1890,211,305 - 90,235,121 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl890,213,965 - 90,235,216 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603950,596,515 - 50,621,942 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CFAP418
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1890,211,305 - 90,235,121 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl890,213,965 - 90,235,216 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603950,596,515 - 50,621,942 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CFAP418
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38895,244,913 - 95,269,201 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl895,244,913 - 95,269,201 (-)EnsemblGRCh38hg38GRCh38
GRCh37896,257,141 - 96,281,429 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36896,327,411 - 96,350,613 (-)NCBINCBI36Build 36hg18NCBI36
Celera892,443,250 - 92,466,452 (-)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef891,464,582 - 91,488,907 (-)NCBIHuRef
CHM1_1896,297,393 - 96,321,714 (-)NCBICHM1_1
T2T-CHM13v2.0896,370,169 - 96,394,457 (-)NCBIT2T-CHM13v2.0
Cfap418
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39410,874,249 - 10,899,425 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl410,874,498 - 10,899,425 (+)EnsemblGRCm39 Ensembl
GRCm38410,874,044 - 10,899,425 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl410,874,498 - 10,899,425 (+)EnsemblGRCm38mm10GRCm38
MGSCv37410,801,645 - 10,826,572 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36410,801,755 - 10,826,572 (+)NCBIMGSCv36mm8
Celera410,682,505 - 10,707,570 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map44.85NCBI
Cfap418
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8528,789,580 - 28,812,891 (+)NCBIGRCr8
mRatBN7.2523,996,395 - 24,015,609 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl523,996,718 - 24,015,605 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx526,185,413 - 26,204,069 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0527,778,402 - 27,797,058 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0527,575,163 - 27,593,901 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0523,358,464 - 23,377,697 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0524,145,829 - 24,165,467 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl523,358,841 - 23,377,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl524,146,171 - 24,165,463 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0528,872,882 - 28,892,517 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4524,739,859 - 24,758,750 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera523,215,936 - 23,234,950 (+)NCBICelera
Cytogenetic Map5q13NCBI
Cfap418
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541711,357,367 - 11,380,941 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541711,357,367 - 11,381,287 (-)NCBIChiLan1.0ChiLan1.0
CFAP418
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27112,532,300 - 112,596,399 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1888,069,305 - 88,133,412 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0891,862,207 - 91,887,127 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1894,062,122 - 94,086,564 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl894,062,122 - 94,086,565 (-)Ensemblpanpan1.1panPan2
CFAP418
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12939,856,910 - 39,869,759 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2939,856,948 - 39,869,112 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2940,015,189 - 40,034,004 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02940,056,037 - 40,074,896 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2940,056,946 - 40,075,496 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12940,070,396 - 40,089,194 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02940,066,400 - 40,085,469 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02940,509,239 - 40,528,285 (-)NCBIUU_Cfam_GSD_1.0
Cfap418
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530339,599,808 - 39,621,847 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365448,170,081 - 8,192,835 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365448,170,841 - 8,192,896 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP418
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl441,373,740 - 41,394,680 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1441,373,725 - 41,394,688 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2444,707,160 - 44,728,131 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Cfap418
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247632,593,034 - 2,612,983 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247632,587,443 - 2,613,066 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 19 47
Low 17 20 13
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000010566   ⟹   ENSCSAP00000008658
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl890,213,965 - 90,235,216 (-)Ensembl
RefSeq Acc Id: XM_008001149   ⟹   XP_007999340
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1890,211,305 - 90,235,121 (-)NCBI
Vero_WHO_p1.0NW_02366603950,596,539 - 50,621,942 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008001150   ⟹   XP_007999341
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1890,213,159 - 90,235,121 (-)NCBI
Vero_WHO_p1.0NW_02366603950,596,515 - 50,621,942 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007999340 (Get FASTA)   NCBI Sequence Viewer  
  XP_007999341 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008658.1
Reference Protein Sequences
RefSeq Acc Id: XP_007999340   ⟸   XM_008001149
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RJ69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007999341   ⟸   XM_008001150
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RJ69 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000008658   ⟸   ENSCSAT00000010566


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012476 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010566.1 UniProtKB/TrEMBL
InterPro C8orf37 UniProtKB/TrEMBL
KEGG Report csab:103237163 UniProtKB/TrEMBL
NCBI Gene C8H8orf37 ENTREZGENE
PANTHER PROTEIN C8ORF37 UniProtKB/TrEMBL
  PTHR33958 UniProtKB/TrEMBL
Pfam RMP UniProtKB/TrEMBL
UniProt A0A0D9RJ69 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-05-11 CFAP418  cilia and flagella associated protein 418  CUNH8orf37  chromosome unknown C8orf37 homolog  Symbol and/or name change 5135510 APPROVED
2020-12-08 CUNH8orf37  chromosome unknown C8orf37 homolog  C8H8orf37  chromosome 8 open reading frame, human C8orf37  Symbol and/or name change 5135510 APPROVED