ZNF24 (zinc finger protein 24) - Rat Genome Database

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Gene: ZNF24 (zinc finger protein 24) Chlorocebus sabaeus
Analyze
Symbol: ZNF24
Name: zinc finger protein 24
RGD ID: 18545258
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); identical protein binding (inferred); INVOLVED IN myelination (inferred); negative regulation of DNA-templated transcription (inferred); positive regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH chromosome 18q deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,418,556 - 45,430,743 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,418,568 - 45,425,743 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605019,920,846 - 19,933,200 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZNF24Green Monkeychromosome 18q deletion syndrome  ISOZNF24 (Homo sapiens)8554872ClinVar Annotator: match by term: Monosomy 18q and deletion 18qClinVarPMID:31690835
ZNF24Green Monkeyintellectual disability  ISOZNF24 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZNF24Green Monkeymyelination involved_inIEAUniProtKB:Q91VN1 and ensembl:ENSMUSP00000064637150520179 EnsemblGO_REF:0000107
ZNF24Green Monkeynegative regulation of DNA-templated transcription involved_inIEAUniProtKB:P17028 and ensembl:ENSP00000261332150520179 EnsemblGO_REF:0000107
ZNF24Green Monkeypositive regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:P17028 and ensembl:ENSP00000261332150520179 EnsemblGO_REF:0000107
ZNF24Green Monkeyregulation of transcription by RNA polymerase II involved_inIEAPANTHER:PTN009066246150520179 TreeGrafterGO_REF:0000118

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZNF24Green Monkeynucleoplasm located_inIEAUniProtKB:P17028 and ensembl:ENSP00000261332150520179 EnsemblGO_REF:0000107
ZNF24Green Monkeynucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
ZNF24Green Monkeynucleus located_inIEAUniRule:UR000415288150520179 UniProtGO_REF:0000104
ZNF24Green Monkeynucleus located_inIEAUniProtKB:Q91VN1 and ensembl:ENSMUSP00000064637150520179 EnsemblGO_REF:0000107
ZNF24Green Monkeynucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044

Molecular Function
1 to 20 of 20 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZNF24Green MonkeyDNA-binding transcription activator activity, RNA polymerase II-specific enablesIEAUniProtKB:P17028 and ensembl:ENSP00000261332150520179 EnsemblGO_REF:0000107
ZNF24Green MonkeyDNA-binding transcription factor activity, RNA polymerase II-specific enablesIEAPANTHER:PTN009066246150520179 TreeGrafterGO_REF:0000118
ZNF24Green Monkeyidentical protein binding enablesIEAUniProtKB:P17028 and ensembl:ENSP00000261332150520179 EnsemblGO_REF:0000107
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:Q969J2 and UniProtKB:Q9NWS99068941 PMID:31403225IntActPMID:31403225
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:P57086 more ...9068941 PMID:28514442IntActPMID:28514442
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:O43309 more ...9068941 PMID:32296183IntActPMID:32296183
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:Q8WWY3 and UniProtKB:Q96JS39068941 PMID:25910212IntActPMID:25910212
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:Q9NWS99068941 PMID:20211142IntActPMID:20211142
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:P25791 more ...9068941 PMID:25416956IntActPMID:25416956
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:P13994 more ...9068941 PMID:31515488IntActPMID:31515488
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:G5E9A7 more ...9068941 PMID:32814053IntActPMID:32814053
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:P57086 more ...9068941 PMID:33961781IntActPMID:33961781
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:P516939068941 PMID:16169070IntActPMID:16169070
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:Q9NX659068941 PMID:19060904IntActPMID:19060904
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:Q86Y139068941 PMID:29892012IntActPMID:29892012
ZNF24Green Monkeyprotein binding enablesISOUniProtKB:P13994 more ...9068941 PMID:16189514IntActPMID:16189514
ZNF24Green MonkeyRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIEAPANTHER:PTN009066246150520179 TreeGrafterGO_REF:0000118
ZNF24Green Monkeysequence-specific DNA binding enablesIEAUniProtKB:P17028 more ...150520179 EnsemblGO_REF:0000107
ZNF24Green Monkeysequence-specific DNA binding enablesIEAARBA:ARBA00026779150520179 UniProtGO_REF:0000117
ZNF24Green Monkeyzinc ion binding enablesIEAUniProtKB-KW:KW-0863150520179 UniProtGO_REF:0000043
1 to 20 of 20 rows



ZNF24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,418,556 - 45,430,743 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,418,568 - 45,425,743 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605019,920,846 - 19,933,200 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381835,332,227 - 35,344,420 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1835,332,227 - 35,345,482 (-)EnsemblGRCh38hg38GRCh38
GRCh371832,912,191 - 32,924,384 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,169,957 - 31,178,405 (-)NCBINCBI36Build 36hg18NCBI36
Build 341831,169,956 - 31,178,403NCBI
Celera1829,720,074 - 29,732,324 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1829,771,791 - 29,784,041 (-)NCBIHuRef
CHM1_11832,839,132 - 32,851,381 (-)NCBICHM1_1
T2T-CHM13v2.01835,523,566 - 35,535,760 (-)NCBIT2T-CHM13v2.0
Zfp24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,142,774 - 24,155,294 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,142,759 - 24,153,867 (-)EnsemblGRCm39 Ensembl
GRCm381824,009,717 - 24,020,813 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1824,009,702 - 24,020,810 (-)EnsemblGRCm38mm10GRCm38
MGSCv371824,170,768 - 24,179,272 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361824,155,277 - 24,163,781 (-)NCBIMGSCv36mm8
Celera1824,502,320 - 24,510,829 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.55NCBI
Zfp24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,573,031 - 15,583,432 (-)NCBIGRCr8
mRatBN7.21815,295,687 - 15,307,319 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,298,290 - 15,306,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1815,485,141 - 15,492,250 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,267,846 - 16,274,955 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,557,596 - 15,564,706 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01815,910,175 - 15,921,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,914,399 - 15,921,734 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,675,784 - 15,687,354 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41815,782,909 - 15,790,125 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11815,809,563 - 15,816,771 (-)NCBI
Celera1815,248,039 - 15,255,255 (-)NCBICelera
Cytogenetic Map18p12NCBI
Znf24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,067,261 - 22,079,216 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,067,261 - 22,079,216 (-)NCBIChiLan1.0ChiLan1.0
ZNF24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21752,721,511 - 52,734,457 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11838,414,102 - 38,430,756 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01828,551,197 - 28,563,351 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,139,846 - 32,152,397 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,144,853 - 32,152,242 (-)Ensemblpanpan1.1panPan2
ZNF24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,691,212 - 54,702,249 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,691,555 - 54,697,183 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha754,117,106 - 54,127,901 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0754,662,616 - 54,673,411 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl754,662,723 - 54,670,299 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1754,345,258 - 54,372,911 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0754,368,570 - 54,379,364 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0754,661,702 - 54,689,042 (+)NCBIUU_Cfam_GSD_1.0
Znf24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,416,647 - 50,427,741 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,743,973 - 9,752,449 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,744,087 - 9,752,346 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,160,530 - 119,167,187 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,156,507 - 119,167,240 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,615,234 - 111,625,806 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Znf24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,732,615 - 9,739,497 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247799,727,764 - 9,739,442 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in ZNF24
207 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20



Ensembl Acc Id: ENSCSAT00000016003   ⟹   ENSCSAP00000013928
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1845,418,568 - 45,425,743 (+)Ensembl
RefSeq Acc Id: XM_007974264   ⟹   XP_007972455
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11845,418,559 - 45,427,751 (+)NCBI
Vero_WHO_p1.0NW_02366605019,920,846 - 19,933,200 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007974265   ⟹   XP_007972456
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11845,418,556 - 45,430,743 (+)NCBI
Vero_WHO_p1.0NW_02366605019,921,021 - 19,933,200 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037982366   ⟹   XP_037838294
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605019,921,983 - 19,933,200 (+)NCBI
Protein RefSeqs XP_007972455 (Get FASTA)   NCBI Sequence Viewer  
  XP_007972456 (Get FASTA)   NCBI Sequence Viewer  
  XP_037838294 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013928
  ENSCSAP00000013928.1
RefSeq Acc Id: XP_007972456   ⟸   XM_007974265
- UniProtKB: A0A0D9RZ89 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007972455   ⟸   XM_007974264
- UniProtKB: A0A0D9RZ89 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000013928   ⟸   ENSCSAT00000016003
RefSeq Acc Id: XP_037838294   ⟸   XM_037982366
- UniProtKB: A0A0D9RZ89 (UniProtKB/TrEMBL)



1 to 22 of 22 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000017907 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016003.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report csab:103222539 UniProtKB/TrEMBL
NCBI Gene ZNF24 ENTREZGENE
PANTHER KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 384 UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9RZ89 ENTREZGENE, UniProtKB/TrEMBL
1 to 22 of 22 rows