Znf24 (zinc finger protein 24) - Rat Genome Database

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Gene: Znf24 (zinc finger protein 24) Chinchilla lanigera
Analyze
Symbol: Znf24
Name: zinc finger protein 24
RGD ID: 8961038
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN myelination (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,067,261 - 22,079,216 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,067,261 - 22,079,216 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,067,261 - 22,079,216 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,067,261 - 22,079,216 (-)NCBIChiLan1.0ChiLan1.0
ZNF24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381835,332,227 - 35,344,420 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1835,332,227 - 35,345,482 (-)EnsemblGRCh38hg38GRCh38
GRCh371832,912,191 - 32,924,384 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,169,957 - 31,178,405 (-)NCBINCBI36Build 36hg18NCBI36
Build 341831,169,956 - 31,178,403NCBI
Celera1829,720,074 - 29,732,324 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1829,771,791 - 29,784,041 (-)NCBIHuRef
CHM1_11832,839,132 - 32,851,381 (-)NCBICHM1_1
T2T-CHM13v2.01835,523,566 - 35,535,760 (-)NCBIT2T-CHM13v2.0
Zfp24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,142,774 - 24,155,294 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,142,759 - 24,153,867 (-)EnsemblGRCm39 Ensembl
GRCm381824,009,717 - 24,020,813 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1824,009,702 - 24,020,810 (-)EnsemblGRCm38mm10GRCm38
MGSCv371824,170,768 - 24,179,272 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361824,155,277 - 24,163,781 (-)NCBIMGSCv36mm8
Celera1824,502,320 - 24,510,829 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.55NCBI
Zfp24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,573,031 - 15,583,432 (-)NCBIGRCr8
mRatBN7.21815,295,687 - 15,307,319 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,298,290 - 15,306,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1815,485,141 - 15,492,250 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,267,846 - 16,274,955 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,557,596 - 15,564,706 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01815,910,175 - 15,921,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,914,399 - 15,921,734 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,675,784 - 15,687,354 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41815,782,909 - 15,790,125 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11815,809,563 - 15,816,771 (-)NCBI
Celera1815,248,039 - 15,255,255 (-)NCBICelera
Cytogenetic Map18p12NCBI
ZNF24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21752,721,511 - 52,734,457 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11838,414,102 - 38,430,756 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01828,551,197 - 28,563,351 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,139,846 - 32,152,397 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,144,853 - 32,152,242 (-)Ensemblpanpan1.1panPan2
ZNF24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,691,212 - 54,702,249 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,691,555 - 54,697,183 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha754,117,106 - 54,127,901 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0754,662,616 - 54,673,411 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl754,662,723 - 54,670,299 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1754,345,258 - 54,372,911 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0754,368,570 - 54,379,364 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0754,661,702 - 54,689,042 (+)NCBIUU_Cfam_GSD_1.0
Znf24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,416,647 - 50,427,741 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,743,973 - 9,752,449 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,744,087 - 9,752,346 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,160,530 - 119,167,187 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,156,507 - 119,167,240 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,615,234 - 111,625,806 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,418,556 - 45,430,743 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,418,568 - 45,425,743 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605019,920,846 - 19,933,200 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,732,615 - 9,739,497 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247799,727,764 - 9,739,442 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000012978   ⟹   ENSCLAP00000012830
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540222,067,261 - 22,079,216 (-)Ensembl
RefSeq Acc Id: XM_013509556   ⟹   XP_013365010
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540222,067,261 - 22,079,215 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509592   ⟹   XP_013365046
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540222,067,261 - 22,079,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509626   ⟹   XP_013365080
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540222,067,261 - 22,079,216 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365010 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365046 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365080 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012830
  ENSCLAP00000012830.1
Reference Protein Sequences
RefSeq Acc Id: XP_013365046   ⟸   XM_013509592
- UniProtKB: A0A8C2YP24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365080   ⟸   XM_013509626
- UniProtKB: A0A8C2YP24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365010   ⟸   XM_013509556
- UniProtKB: A0A8C2YP24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012830   ⟸   ENSCLAT00000012978
Protein Domains
C2H2-type   SCAN box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008859 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012978 ENTREZGENE
  ENSCLAT00000012978.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf24 ENTREZGENE
PANTHER PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2YP24 ENTREZGENE, UniProtKB/TrEMBL