IL9 (interleukin 9) - Rat Genome Database

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Gene: IL9 (interleukin 9) Chlorocebus sabaeus
Analyze
Symbol: IL9
Name: interleukin 9
RGD ID: 18543155
Description: ENCODES a protein that exhibits cytokine activity (ortholog); interleukin-9 receptor binding (ortholog); INVOLVED IN B cell differentiation (ortholog); B cell proliferation (ortholog); immunoglobulin mediated immune response (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Airway Obstruction (ortholog); asthma (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: IL-9; interleukin-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12338,641,228 - 38,645,810 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2338,641,741 - 38,645,276 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603439,263,786 - 39,267,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:7561102   PMID:22301074  


Genomics

Comparative Map Data
IL9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12338,641,228 - 38,645,810 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2338,641,741 - 38,645,276 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603439,263,786 - 39,267,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
IL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385135,892,246 - 135,895,841 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5135,892,246 - 135,895,841 (-)EnsemblGRCh38hg38GRCh38
GRCh375135,227,935 - 135,231,530 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365135,255,834 - 135,259,415 (-)NCBINCBI36Build 36hg18NCBI36
Build 345135,255,833 - 135,259,415NCBI
Celera5131,352,664 - 131,356,247 (-)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5130,416,404 - 130,419,991 (-)NCBIHuRef
CHM1_15134,660,566 - 134,664,147 (-)NCBICHM1_1
T2T-CHM13v2.05136,414,743 - 136,418,342 (-)NCBIT2T-CHM13v2.0
Il9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391356,627,090 - 56,630,070 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1356,627,090 - 56,630,059 (-)EnsemblGRCm39 Ensembl
GRCm381356,479,277 - 56,482,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1356,479,277 - 56,482,246 (-)EnsemblGRCm38mm10GRCm38
MGSCv371356,580,638 - 56,583,607 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361356,488,899 - 56,491,868 (-)NCBIMGSCv36mm8
Celera1357,542,869 - 57,545,822 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.06NCBI
Il9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,117,028 - 8,120,151 (+)NCBIGRCr8
mRatBN7.2178,111,772 - 8,114,895 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,111,772 - 8,114,895 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx178,129,967 - 8,133,062 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,661,578 - 9,664,708 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0178,126,366 - 8,129,461 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0178,558,827 - 8,561,950 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl178,558,827 - 8,561,950 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01710,733,181 - 10,736,304 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41714,068,757 - 14,071,880 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11714,068,756 - 14,071,880 (+)NCBI
Celera178,204,235 - 8,207,358 (+)NCBICelera
Cytogenetic Map17p14NCBI
Il9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540830,950,816 - 30,953,571 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540830,950,816 - 30,953,571 (-)NCBIChiLan1.0ChiLan1.0
IL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24131,181,066 - 131,184,621 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15129,320,626 - 129,324,181 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05131,283,170 - 131,289,777 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15137,425,367 - 137,428,945 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5137,425,367 - 137,428,945 (-)Ensemblpanpan1.1panPan2
IL9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11123,808,919 - 23,814,085 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1123,811,117 - 23,814,079 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1122,559,274 - 22,562,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01124,627,628 - 24,630,667 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1124,627,473 - 24,630,592 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11123,315,114 - 23,318,150 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01123,180,949 - 23,183,990 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01123,831,104 - 23,834,141 (-)NCBIUU_Cfam_GSD_1.0
Il9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213123,959,046 - 123,962,068 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365972,983,953 - 2,986,975 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365972,983,953 - 2,986,975 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2138,048,943 - 138,052,588 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12138,048,943 - 138,052,588 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22143,648,289 - 143,651,957 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Il9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473311,226,769 - 11,229,461 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473311,226,769 - 11,229,461 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IL9
148 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
42 3 17 17 17 42 3

Sequence


Ensembl Acc Id: ENSCSAT00000011453   ⟹   ENSCSAP00000009524
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2338,641,741 - 38,645,276 (-)Ensembl
RefSeq Acc Id: NM_001292075   ⟹   NP_001279004
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603439,263,786 - 39,267,322 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001279004 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACI28916 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009524.1
Ensembl Acc Id: ENSCSAP00000009524   ⟸   ENSCSAT00000011453
RefSeq Acc Id: NP_001279004   ⟸   NM_001292075
- Peptide Label: precursor
- UniProtKB: B6E126 (UniProtKB/TrEMBL),   A0A0D9RLN5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013366 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011453.1 UniProtKB/TrEMBL
InterPro IL-7/IL-9_CS UniProtKB/TrEMBL
  IL-9 UniProtKB/TrEMBL
KEGG Report csab:103244581 UniProtKB/TrEMBL
NCBI Gene IL9 ENTREZGENE
PANTHER INTERLEUKIN-9 UniProtKB/TrEMBL
  PTHR16926 UniProtKB/TrEMBL
PRINTS INTERLEUKIN9 UniProtKB/TrEMBL
PROSITE INTERLEUKIN_7_9 UniProtKB/TrEMBL
UniProt A0A0D9RLN5 ENTREZGENE, UniProtKB/TrEMBL
  B6E126 ENTREZGENE, UniProtKB/TrEMBL