CRNKL1 (crooked neck pre-mRNA splicing factor 1) - Rat Genome Database

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Gene: CRNKL1 (crooked neck pre-mRNA splicing factor 1) Chlorocebus sabaeus
Analyze
Symbol: CRNKL1
Name: crooked neck pre-mRNA splicing factor 1
RGD ID: 18541885
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN cellular response to brain-derived neurotrophic factor stimulus (ortholog); cellular response to leukemia inhibitory factor (ortholog); cerebral cortex development (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); familial hyperinsulinemic hypoglycemia 1 (ortholog); melanoma (ortholog); FOUND IN catalytic step 2 spliceosome (inferred); nucleus (inferred); post-mRNA release spliceosomal complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: crooked neck-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1249,052,304 - 49,070,600 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl249,054,125 - 49,070,576 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660783,838,825 - 3,857,376 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CRNKL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1249,052,304 - 49,070,600 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl249,054,125 - 49,070,576 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660783,838,825 - 3,857,376 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CRNKL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382020,034,368 - 20,056,046 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2020,034,368 - 20,056,046 (-)EnsemblGRCh38hg38GRCh38
GRCh372020,015,012 - 20,036,690 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362019,963,012 - 19,984,690 (-)NCBINCBI36Build 36hg18NCBI36
Build 342019,963,011 - 19,984,690NCBI
Celera2020,089,029 - 20,110,711 (-)NCBICelera
Cytogenetic Map20p11.23NCBI
HuRef2019,976,670 - 19,998,362 (-)NCBIHuRef
CHM1_12020,015,382 - 20,037,072 (-)NCBICHM1_1
T2T-CHM13v2.02020,088,648 - 20,110,326 (-)NCBIT2T-CHM13v2.0
Crnkl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392145,759,402 - 145,776,620 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2145,759,399 - 145,776,934 (-)EnsemblGRCm39 Ensembl
GRCm382145,917,482 - 145,934,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2145,917,479 - 145,935,014 (-)EnsemblGRCm38mm10GRCm38
MGSCv372145,743,218 - 145,760,436 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362145,608,923 - 145,626,141 (-)NCBIMGSCv36mm8
Celera2147,153,324 - 147,170,535 (-)NCBICelera
Cytogenetic Map2G1NCBI
cM Map271.28NCBI
Crnkl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83153,764,718 - 153,807,973 (-)NCBIGRCr8
mRatBN7.23133,338,593 - 133,354,329 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl61,140,615 - 1,142,918 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl3133,337,039 - 133,354,302 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx61,362,744 - 1,365,058 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.061,672,026 - 1,674,340 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.061,196,426 - 1,198,740 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0618,349,226 - 18,351,540 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl618,349,167 - 18,351,536 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0628,249,112 - 28,251,426 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43134,538,940 - 134,554,660 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6957,687 - 960,001 (+)NCBICelera
Cytogenetic Map3q41NCBI
Crnkl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541528,158,351 - 28,172,055 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541528,158,351 - 28,171,335 (-)NCBIChiLan1.0ChiLan1.0
CRNKL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22120,924,252 - 20,940,546 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12020,919,773 - 20,937,382 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02019,992,092 - 20,010,809 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12019,957,545 - 19,975,809 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2019,959,356 - 19,979,094 (-)Ensemblpanpan1.1panPan2
CRNKL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1243,294,607 - 3,310,846 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl243,294,616 - 3,310,702 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha243,322,820 - 3,338,912 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0243,703,030 - 3,719,137 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl243,702,577 - 3,720,541 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1243,298,774 - 3,314,853 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0243,401,816 - 3,417,906 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0243,679,794 - 3,695,883 (+)NCBIUU_Cfam_GSD_1.0
Crnkl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640151,896,734 - 151,919,612 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936485327,835 - 350,132 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936485328,077 - 351,323 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRNKL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1728,077,707 - 28,111,558 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11728,079,541 - 28,111,871 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21731,810,243 - 31,816,810 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Crnkl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474120,564,474 - 20,581,716 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474120,565,686 - 20,581,708 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CRNKL1
430 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000009523   ⟹   ENSCSAP00000007636
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl249,054,125 - 49,070,576 (-)Ensembl
RefSeq Acc Id: XM_007961431   ⟹   XP_007959622
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1249,052,304 - 49,070,600 (-)NCBI
Vero_WHO_p1.0NW_0236660783,838,825 - 3,857,376 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007959622 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007636
  ENSCSAP00000007636.1
RefSeq Acc Id: XP_007959622   ⟸   XM_007961431
- UniProtKB: A0A0D9RG97 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000007636   ⟸   ENSCSAT00000009523


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011434 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009523.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro HAT UniProtKB/TrEMBL
  Syf1-like UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103215154 UniProtKB/TrEMBL
NCBI Gene CRNKL1 ENTREZGENE
PANTHER CROOKED NECK-LIKE PROTEIN 1 UniProtKB/TrEMBL
  PTHR11246 UniProtKB/TrEMBL
Pfam HAT UniProtKB/TrEMBL
SMART HAT UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A0D9RG97 ENTREZGENE, UniProtKB/TrEMBL