HTATIP2 (HIV-1 Tat interactive protein 2) - Rat Genome Database

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Gene: HTATIP2 (HIV-1 Tat interactive protein 2) Chlorocebus sabaeus
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Symbol: HTATIP2
Name: HIV-1 Tat interactive protein 2
RGD ID: 18524149
Description: ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN positive regulation of programmed cell death (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of angiogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: oxidoreductase HTATIP2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,624,782 - 44,643,188 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl144,624,734 - 44,643,121 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038141,959,157 - 141,977,902 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HTATIP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,624,782 - 44,643,188 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl144,624,734 - 44,643,121 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038141,959,157 - 141,977,902 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
HTATIP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381120,363,714 - 20,383,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1120,363,685 - 20,383,782 (+)EnsemblGRCh38hg38GRCh38
GRCh371120,385,260 - 20,405,328 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361120,341,807 - 20,361,905 (+)NCBINCBI36Build 36hg18NCBI36
Build 341120,341,923 - 20,361,904NCBI
Celera1120,517,827 - 20,537,915 (+)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1120,068,532 - 20,088,622 (+)NCBIHuRef
CHM1_11120,385,142 - 20,405,237 (+)NCBICHM1_1
T2T-CHM13v2.01120,484,405 - 20,504,464 (+)NCBIT2T-CHM13v2.0
Htatip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39749,408,761 - 49,423,748 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl749,408,863 - 49,423,723 (+)EnsemblGRCm39 Ensembl
GRCm38749,759,045 - 49,774,000 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl749,759,115 - 49,773,975 (+)EnsemblGRCm38mm10GRCm38
MGSCv37757,014,476 - 57,029,369 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36749,627,174 - 49,642,016 (+)NCBIMGSCv36mm8
Celera745,209,058 - 45,223,844 (+)NCBICelera
Cytogenetic Map7B4NCBI
cM Map731.44NCBI
Htatip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81108,609,424 - 108,624,810 (+)NCBIGRCr8
mRatBN7.2199,473,411 - 99,488,632 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,469,245 - 99,488,629 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1104,828,076 - 104,842,693 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01113,299,999 - 113,314,616 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01106,622,254 - 106,636,873 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01105,094,272 - 105,109,459 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1105,094,411 - 105,109,461 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01106,144,564 - 106,159,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4199,563,187 - 99,577,802 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1199,640,882 - 99,655,918 (+)NCBI
Celera193,673,035 - 93,687,653 (+)NCBICelera
Cytogenetic Map1q22NCBI
Htatip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554761,196,986 - 1,222,730 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554761,197,053 - 1,219,679 (+)NCBIChiLan1.0ChiLan1.0
HTATIP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2922,665,003 - 22,685,165 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11122,624,797 - 22,644,938 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01120,388,475 - 20,408,633 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11120,300,514 - 20,320,271 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1120,300,528 - 20,320,271 (+)Ensemblpanpan1.1panPan2
HTATIP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12142,386,568 - 42,402,962 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2142,385,480 - 42,402,960 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2141,863,579 - 41,879,999 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02143,508,416 - 43,525,298 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2143,508,147 - 43,525,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12142,510,443 - 42,527,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02142,686,207 - 42,702,947 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02143,067,674 - 43,084,591 (+)NCBIUU_Cfam_GSD_1.0
Htatip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494742,593,660 - 42,642,829 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366541,315,862 - 1,333,005 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366541,315,921 - 1,332,926 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HTATIP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl239,034,013 - 39,055,315 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1239,035,337 - 39,052,178 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2241,963,512 - 41,980,422 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Htatip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476611,649,834 - 11,669,418 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476611,650,643 - 11,667,338 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 9 28
Low 11 32
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000003153   ⟹   ENSCSAP00000001443
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl144,624,734 - 44,643,121 (-)Ensembl
RefSeq Acc Id: XM_008004286   ⟹   XP_008002477
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1144,624,782 - 44,643,111 (-)NCBI
Vero_WHO_p1.0NW_023666038141,959,157 - 141,977,832 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008004294   ⟹   XP_008002485
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1144,624,782 - 44,643,148 (-)NCBI
Vero_WHO_p1.0NW_023666038141,959,157 - 141,977,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008004300   ⟹   XP_008002491
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1144,624,782 - 44,643,188 (-)NCBI
Vero_WHO_p1.0NW_023666038141,959,157 - 141,977,902 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008002477 (Get FASTA)   NCBI Sequence Viewer  
  XP_008002485 (Get FASTA)   NCBI Sequence Viewer  
  XP_008002491 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001443
  ENSCSAP00000001443.1
RefSeq Acc Id: XP_008002491   ⟸   XM_008004300
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008002485   ⟸   XM_008004294
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008002477   ⟸   XM_008004286
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QYK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000001443   ⟸   ENSCSAT00000003153


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005121 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003153.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Semialdehyde_DH_NAD-bd UniProtKB/TrEMBL
KEGG Report csab:103238890 UniProtKB/TrEMBL
NCBI Gene HTATIP2 ENTREZGENE
PANTHER OXIDOREDUCTASE HTATIP2 UniProtKB/TrEMBL
  OXIDOREDUCTASE HTATIP2 UniProtKB/TrEMBL
Pfam NAD_binding_10 UniProtKB/TrEMBL
SMART Semialdhyde_dh UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A0D9QYK4 ENTREZGENE, UniProtKB/TrEMBL