Htatip2 (HIV-1 Tat interactive protein 2) - Rat Genome Database

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Gene: Htatip2 (HIV-1 Tat interactive protein 2) Mus musculus
Analyze
Symbol: Htatip2
Name: HIV-1 Tat interactive protein 2
RGD ID: 1320557
MGI Page MGI
Description: Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in import into nucleus and regulation of angiogenesis. Predicted to act upstream of or within positive regulation of programmed cell death and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nuclear envelope. Predicted to be active in cytoplasm. Is expressed in heart and limb. Orthologous to human HTATIP2 (HIV-1 Tat interactive protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW111545; Cc3; HIV-1 tat interactive protein 2, 30 kDa homolog; HIV-1 tat interactive protein 2, homolog; oxidoreductase HTATIP2; tat-interacting protein 30 kDa; TIP; Tip30
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39749,408,761 - 49,423,748 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl749,408,863 - 49,423,723 (+)EnsemblGRCm39 Ensembl
GRCm38749,759,045 - 49,774,000 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl749,759,115 - 49,773,975 (+)EnsemblGRCm38mm10GRCm38
MGSCv37757,014,476 - 57,029,369 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36749,627,174 - 49,642,016 (+)NCBIMGSCv36mm8
Celera745,209,058 - 45,223,844 (+)NCBICelera
Cytogenetic Map7B4NCBI
cM Map731.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,4-phenylenediamine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-tribromophenol  (ISO)
2,4,6-trinitrotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxynon-2-enal  (EXP)
5-fluorouracil  (EXP,ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
amitrole  (ISO)
antimonite  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bromobenzene  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (EXP)
cannabidiol  (EXP)
cefaloridine  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP)
chrysene  (EXP)
cidofovir anhydrous  (ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
dibenzofurans  (EXP)
dichloroacetic acid  (EXP)
diethyl maleate  (EXP)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
diquat  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
etoposide  (EXP,ISO)
fenofibrate  (ISO)
finasteride  (ISO)
fipronil  (ISO)
flutamide  (ISO)
formaldehyde  (ISO)
gentamycin  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
indole-3-methanol  (ISO)
inulin  (EXP)
irinotecan  (ISO)
ivermectin  (ISO)
levofloxacin  (ISO)
lipopolysaccharide  (ISO)
malathion  (ISO)
menadione  (EXP)
mercury dibromide  (ISO)
metformin  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
methylmercury(1+)  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
NADP zwitterion  (ISO)
NADP(+)  (ISO)
nefazodone  (ISO)
nickel sulfate  (ISO)
nimesulide  (ISO)
p-chloromercuribenzoic acid  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
parathion  (EXP)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
permethrin  (EXP)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
propofol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium tungstate  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thapsigargin  (EXP)
topotecan  (ISO)
triadimefon  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO,ISS)
cytosol  (ISO)
nuclear envelope  (ISO,ISS)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14695192   PMID:15073177   PMID:16141072   PMID:16141073   PMID:16280085  
PMID:16330018   PMID:17360635   PMID:17533366   PMID:20059953   PMID:21159643   PMID:21252234   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22733137   PMID:24853420   PMID:25175814  
PMID:25530119   PMID:31468715   PMID:32325033   PMID:36109497   PMID:37733590  


Genomics

Comparative Map Data
Htatip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39749,408,761 - 49,423,748 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl749,408,863 - 49,423,723 (+)EnsemblGRCm39 Ensembl
GRCm38749,759,045 - 49,774,000 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl749,759,115 - 49,773,975 (+)EnsemblGRCm38mm10GRCm38
MGSCv37757,014,476 - 57,029,369 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36749,627,174 - 49,642,016 (+)NCBIMGSCv36mm8
Celera745,209,058 - 45,223,844 (+)NCBICelera
Cytogenetic Map7B4NCBI
cM Map731.44NCBI
HTATIP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381120,363,714 - 20,383,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1120,363,685 - 20,383,782 (+)EnsemblGRCh38hg38GRCh38
GRCh371120,385,260 - 20,405,328 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361120,341,807 - 20,361,905 (+)NCBINCBI36Build 36hg18NCBI36
Build 341120,341,923 - 20,361,904NCBI
Celera1120,517,827 - 20,537,915 (+)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1120,068,532 - 20,088,622 (+)NCBIHuRef
CHM1_11120,385,142 - 20,405,237 (+)NCBICHM1_1
T2T-CHM13v2.01120,484,405 - 20,504,464 (+)NCBIT2T-CHM13v2.0
Htatip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81108,609,424 - 108,624,810 (+)NCBIGRCr8
mRatBN7.2199,473,411 - 99,488,632 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,469,245 - 99,488,629 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1104,828,076 - 104,842,693 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01113,299,999 - 113,314,616 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01106,622,254 - 106,636,873 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01105,094,272 - 105,109,459 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1105,094,411 - 105,109,461 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01106,144,564 - 106,159,708 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4199,563,187 - 99,577,802 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1199,640,882 - 99,655,918 (+)NCBI
Celera193,673,035 - 93,687,653 (+)NCBICelera
Cytogenetic Map1q22NCBI
Htatip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554761,196,986 - 1,222,730 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554761,197,053 - 1,219,679 (+)NCBIChiLan1.0ChiLan1.0
HTATIP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2922,665,003 - 22,685,165 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11122,624,797 - 22,644,938 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01120,388,475 - 20,408,633 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11120,300,514 - 20,320,271 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1120,300,528 - 20,320,271 (+)Ensemblpanpan1.1panPan2
HTATIP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12142,386,568 - 42,402,962 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2142,385,480 - 42,402,960 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2141,863,579 - 41,879,999 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02143,508,416 - 43,525,298 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2143,508,147 - 43,525,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12142,510,443 - 42,527,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02142,686,207 - 42,702,947 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02143,067,674 - 43,084,591 (+)NCBIUU_Cfam_GSD_1.0
Htatip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494742,593,660 - 42,642,829 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366541,315,862 - 1,333,005 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366541,315,921 - 1,332,926 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HTATIP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl239,034,013 - 39,055,315 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1239,035,337 - 39,052,178 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2241,963,512 - 41,980,422 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HTATIP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,624,782 - 44,643,188 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl144,624,734 - 44,643,121 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038141,959,157 - 141,977,902 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Htatip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476611,649,834 - 11,669,418 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476611,650,643 - 11,667,338 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Htatip2
605 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:150
Interacting mature miRNAs:168
Transcripts:ENSMUST00000085272
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
25314304Vmm1_mvariable multisystem mineralization 1, muzzle (mouse)74714974856549748Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74714974874149748Mouse
12738423Lfibq6_mliver fibrosis QTL 6 (mouse)74769437866704862Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse

Markers in Region
AW111545  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38749,773,654 - 49,773,769UniSTSGRCm38
MGSCv37757,029,024 - 57,029,139UniSTSGRCm37
Celera745,223,499 - 45,223,614UniSTS
Cytogenetic Map7B5UniSTS
Whitehead/MRC_RH7619.96UniSTS
UniSTS:235674  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38749,773,656 - 49,773,924UniSTSGRCm38
MGSCv37757,029,026 - 57,029,294UniSTSGRCm37
Celera745,223,501 - 45,223,769UniSTS
Cytogenetic Map7B5UniSTS
AF061972  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38749,773,573 - 49,773,673UniSTSGRCm38
MGSCv37757,028,943 - 57,029,043UniSTSGRCm37
Celera745,223,418 - 45,223,518UniSTS
Cytogenetic Map7B5UniSTS
Whitehead/MRC_RH7619.98UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001146049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001146050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001146052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001146053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF061972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW121187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY151050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB575839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY292123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB318388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB593552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000085272   ⟹   ENSMUSP00000082374
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl749,408,877 - 49,423,723 (+)Ensembl
GRCm38.p6 Ensembl749,759,129 - 49,773,975 (+)Ensembl
RefSeq Acc Id: ENSMUST00000207895   ⟹   ENSMUSP00000146858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl749,408,901 - 49,423,723 (+)Ensembl
GRCm38.p6 Ensembl749,759,153 - 49,773,975 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208048
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl749,408,863 - 49,412,507 (+)Ensembl
GRCm38.p6 Ensembl749,759,115 - 49,762,759 (+)Ensembl
RefSeq Acc Id: NM_001146049   ⟹   NP_001139521
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39749,408,854 - 49,423,747 (+)NCBI
GRCm38749,759,106 - 49,773,999 (+)NCBI
MGSCv37757,014,476 - 57,029,369 (+)RGD
Celera745,209,058 - 45,223,844 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001146050   ⟹   NP_001139522
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39749,408,854 - 49,423,747 (+)NCBI
GRCm38749,759,106 - 49,773,999 (+)NCBI
MGSCv37757,014,476 - 57,029,369 (+)RGD
Celera745,209,058 - 45,223,844 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001146052   ⟹   NP_001139524
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39749,409,260 - 49,423,747 (+)NCBI
GRCm38749,759,512 - 49,773,999 (+)NCBI
MGSCv37757,014,476 - 57,029,369 (+)RGD
Celera745,209,058 - 45,223,844 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001146053   ⟹   NP_001139525
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39749,408,854 - 49,423,747 (+)NCBI
GRCm38749,759,106 - 49,773,999 (+)NCBI
MGSCv37757,014,476 - 57,029,369 (+)RGD
Celera745,209,058 - 45,223,844 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_016865   ⟹   NP_058561
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39749,408,854 - 49,423,747 (+)NCBI
GRCm38749,759,106 - 49,773,999 (+)NCBI
MGSCv37757,014,476 - 57,029,369 (+)RGD
Celera745,209,058 - 45,223,844 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006540989   ⟹   XP_006541052
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39749,408,848 - 49,423,748 (+)NCBI
GRCm38749,759,100 - 49,774,000 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242770   ⟹   XP_030098630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39749,408,761 - 49,423,748 (+)NCBI
GRCm38749,759,045 - 49,774,000 (+)NCBI
Sequence:
RefSeq Acc Id: NP_058561   ⟸   NM_016865
- Peptide Label: isoform a
- UniProtKB: Q3U816 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139521   ⟸   NM_001146049
- Peptide Label: isoform b
- UniProtKB: Q9D5F8 (UniProtKB/Swiss-Prot),   Q99KN6 (UniProtKB/Swiss-Prot),   Q810Y5 (UniProtKB/Swiss-Prot),   Q9D804 (UniProtKB/Swiss-Prot),   Q9Z2G9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001139522   ⟸   NM_001146050
- Peptide Label: isoform b
- UniProtKB: Q9D5F8 (UniProtKB/Swiss-Prot),   Q99KN6 (UniProtKB/Swiss-Prot),   Q810Y5 (UniProtKB/Swiss-Prot),   Q9D804 (UniProtKB/Swiss-Prot),   Q9Z2G9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001139525   ⟸   NM_001146053
- Peptide Label: isoform b
- UniProtKB: Q9D5F8 (UniProtKB/Swiss-Prot),   Q99KN6 (UniProtKB/Swiss-Prot),   Q810Y5 (UniProtKB/Swiss-Prot),   Q9D804 (UniProtKB/Swiss-Prot),   Q9Z2G9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001139524   ⟸   NM_001146052
- Peptide Label: isoform b
- UniProtKB: Q9D5F8 (UniProtKB/Swiss-Prot),   Q99KN6 (UniProtKB/Swiss-Prot),   Q810Y5 (UniProtKB/Swiss-Prot),   Q9D804 (UniProtKB/Swiss-Prot),   Q9Z2G9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006541052   ⟸   XM_006540989
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030098630   ⟸   XM_030242770
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000082374   ⟸   ENSMUST00000085272
RefSeq Acc Id: ENSMUSP00000146858   ⟸   ENSMUST00000207895
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z2G9-F1-model_v2 AlphaFold Q9Z2G9 1-242 view protein structure

Promoters
RGD ID:8664209
Promoter ID:EPDNEW_M10136
Type:initiation region
Name:Htatip2_1
Description:Mus musculus HIV-1 Tat interactive protein 2 , transcript variant4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38749,759,117 - 49,759,177EPDNEW
RGD ID:6841302
Promoter ID:MM_KWN:50601
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Liver,   Lung,   MEF_B4
Transcripts:NM_001146049,   NM_001146050,   NM_001146053,   NM_016865,   UC009HBO.1,   UC009HBR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36757,014,344 - 57,014,844 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1859271 AgrOrtholog
Ensembl Genes ENSMUSG00000039745 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000085272 ENTREZGENE
  ENSMUST00000085272.7 UniProtKB/Swiss-Prot
  ENSMUST00000207895 ENTREZGENE
  ENSMUST00000207895.2 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semialdehyde_DH_NAD-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:53415 UniProtKB/Swiss-Prot
MGD MGI:1859271 ENTREZGENE
NCBI Gene 53415 ENTREZGENE
PANTHER OXIDOREDUCTASE HTATIP2 UniProtKB/Swiss-Prot
  OXIDOREDUCTASE HTATIP2 UniProtKB/Swiss-Prot
  OXIDOREDUCTASE HTATIP2 UniProtKB/TrEMBL
  OXIDOREDUCTASE HTATIP2 UniProtKB/TrEMBL
Pfam NAD_binding_10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Htatip2 PhenoGen
SMART Semialdhyde_dh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt HTAI2_MOUSE UniProtKB/Swiss-Prot
  Q3U816 ENTREZGENE, UniProtKB/TrEMBL
  Q3UJL4_MOUSE UniProtKB/TrEMBL
  Q810Y5 ENTREZGENE
  Q99KN6 ENTREZGENE
  Q9D5F8 ENTREZGENE
  Q9D804 ENTREZGENE
  Q9Z2G9 ENTREZGENE
UniProt Secondary Q810Y5 UniProtKB/Swiss-Prot
  Q99KN6 UniProtKB/Swiss-Prot
  Q9D5F8 UniProtKB/Swiss-Prot
  Q9D804 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-29 Htatip2  HIV-1 Tat interactive protein 2    HIV-1 tat interactive protein 2, homolog (human)  Symbol and/or name change 5135510 APPROVED