LOC103245341 (coiled-coil domain-containing protein 33) - Rat Genome Database

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Gene: LOC103245341 (coiled-coil domain-containing protein 33) Chlorocebus sabaeus
Analyze
Symbol: LOC103245341
Name: coiled-coil domain-containing protein 33
RGD ID: 18499912
Description: ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN peroxisome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CCDC33; coiled-coil domain containing 33
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1269,153,498 - 9,251,614 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048132,431,532 - 132,472,088 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
peroxisome  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC103245341
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1269,153,498 - 9,251,614 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048132,431,532 - 132,472,088 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CCDC33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381574,202,999 - 74,336,472 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1574,202,705 - 74,336,472 (+)EnsemblGRCh38hg38GRCh38
GRCh371574,528,667 - 74,628,482 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361572,315,720 - 72,415,535 (+)NCBINCBI36Build 36hg18NCBI36
Celera1551,477,090 - 51,577,123 (+)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1551,324,495 - 51,424,347 (+)NCBIHuRef
CHM1_11574,646,792 - 74,746,627 (+)NCBICHM1_1
T2T-CHM13v2.01572,084,401 - 72,204,223 (+)NCBIT2T-CHM13v2.0
Ccdc33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39957,935,956 - 58,026,111 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl957,935,960 - 58,026,106 (-)EnsemblGRCm39 Ensembl
GRCm38958,028,673 - 58,118,823 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,028,677 - 58,118,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv37957,876,489 - 57,966,630 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36957,826,814 - 57,900,434 (-)NCBIMGSCv36mm8
Celera955,262,985 - 55,353,102 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.63NCBI
Ccdc33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8867,331,519 - 67,430,194 (-)NCBIGRCr8
mRatBN7.2858,434,798 - 58,534,338 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl858,435,661 - 58,534,370 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx863,966,074 - 64,047,953 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0862,243,628 - 62,325,511 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0860,108,194 - 60,190,076 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0862,809,768 - 62,910,520 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl862,811,173 - 62,893,087 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0862,586,934 - 62,686,180 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4861,806,805 - 61,888,721 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera857,899,978 - 57,981,440 (-)NCBICelera
Cytogenetic Map8q24NCBI
Ccdc33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554503,481,232 - 3,576,771 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554503,485,789 - 3,576,768 (-)NCBIChiLan1.0ChiLan1.0
CCDC33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21663,462,360 - 63,564,080 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11567,625,948 - 67,727,671 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01553,158,057 - 53,278,500 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11572,799,640 - 72,864,897 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1572,800,067 - 72,899,576 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1572,800,067 - 72,899,576 (+)NCBIpanpan1.1panPan2
CCDC33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13037,383,918 - 37,473,425 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3037,384,239 - 37,473,339 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3037,319,522 - 37,408,110 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03037,590,971 - 37,679,693 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3037,591,299 - 37,679,237 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13037,543,141 - 37,632,214 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03037,568,919 - 37,657,483 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03037,824,573 - 37,913,268 (+)NCBIUU_Cfam_GSD_1.0
Ccdc33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640115,431,872 - 115,518,804 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647133,261,012 - 33,366,796 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647133,261,012 - 33,366,850 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl759,190,179 - 59,290,877 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1759,188,624 - 59,224,071 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Ccdc33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624781299,898 - 388,775 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624781300,173 - 388,634 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008015900   ⟹   XP_008014091
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1269,153,625 - 9,251,614 (-)NCBI
Vero_WHO_p1.0NW_023666048132,431,532 - 132,472,088 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008015902   ⟹   XP_008014093
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1269,153,625 - 9,251,614 (-)NCBI
Vero_WHO_p1.0NW_023666048132,431,532 - 132,472,088 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008014091 (Get FASTA)   NCBI Sequence Viewer  
  XP_008014093 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_008014093   ⟸   XM_008015902
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008014091   ⟸   XM_008015900
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene CCDC33 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103245341  coiled-coil domain-containing protein 33  CCDC33  coiled-coil domain containing 33  Symbol and/or name change 5135510 APPROVED