KATNB1 (katanin regulatory subunit B1)

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Gene: KATNB1 (katanin regulatory subunit B1) Chlorocebus sabaeus

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Symbol:

KATNB1

Name:

katanin regulatory subunit B1

RGD ID:

18479709

Description:

ENCODES a protein that exhibits ATPase regulator activity (inferred); dynein complex binding (inferred); microtubule binding (inferred); INVOLVED IN microtubule severing (ortholog); positive regulation of apoptotic process (ortholog); positive regulation of neuron projection development (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN axon (ortholog); growth cone (ortholog); midbody (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

katanin p80 WD40 repeat-containing subunit B1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	43,666,892 - 43,688,110 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	43,666,940 - 43,687,807 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	32,491,471 - 32,513,027 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISO)

Chromosome 16q12 Duplication Syndrome (ISO)

developmental and epileptic encephalopathy (ISO)

early infantile epileptic encephalopathy (ISO)

genetic disease (ISO)

lissencephaly 6 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

microtubule depolymerization (IEA)

microtubule severing (IEA,ISO)

mitotic chromosome movement towards spindle pole (IEA)

negative regulation of microtubule depolymerization (IEA)

positive regulation of apoptotic process (ISO)

positive regulation of microtubule depolymerization (IEA)

positive regulation of neuron projection development (ISO)

Cellular Component

axon (IEA,ISO)

centrosome (IEA)

cytoplasm (IEA)

cytoskeleton (IEA)

cytosol (IEA)

growth cone (ISO)

katanin complex (IEA)

microtubule (IEA)

microtubule cytoskeleton (IEA)

midbody (ISO)

neuronal cell body (ISO)

plasma membrane (IEA)

spindle (IEA)

spindle pole (IEA)

Molecular Function

ATPase regulator activity (IEA)

dynein complex binding (IEA)

microtubule binding (IEA)

protein binding (ISO)

protein heterodimerization activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

KATNB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	43,666,892 - 43,688,110 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	43,666,940 - 43,687,807 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	32,491,471 - 32,513,027 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

KATNB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	57,735,770 - 57,757,244 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	57,735,739 - 57,757,244 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	57,769,682 - 57,791,156 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	56,327,161 - 56,348,663 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	56,328,617 - 56,348,657	NCBI
Celera	16	42,266,969 - 42,288,421 (+)	NCBI		Celera
Cytogenetic Map	16	q21	NCBI
HuRef	16	43,636,584 - 43,658,036 (+)	NCBI		HuRef
CHM1_1	16	59,176,440 - 59,197,887 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	63,530,976 - 63,552,401 (+)	NCBI		T2T-CHM13v2.0

Katnb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	95,807,804 - 95,826,502 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	95,807,814 - 95,829,777 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	95,081,175 - 95,099,874 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	95,081,186 - 95,103,149 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	97,605,101 - 97,623,774 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	97,970,330 - 97,989,003 (+)	NCBI		MGSCv36	mm8
Celera	8	99,407,232 - 99,425,928 (+)	NCBI		Celera
Cytogenetic Map	8	C5	NCBI
cM Map	8	47.12	NCBI

Katnb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	9,927,249 - 9,946,750 (-)	NCBI		GRCr8
mRatBN7.2	19	9,921,216 - 9,940,853 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	9,921,219 - 9,940,650 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	9,885,262 - 9,902,647 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	10,652,103 - 10,669,488 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	9,938,944 - 9,956,376 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	10,340,027 - 10,360,319 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,340,307 - 10,360,310 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	10,320,130 - 10,339,578 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	10,355,488 - 10,373,010 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	10,360,314 - 10,377,836 (-)	NCBI
Celera	19	9,809,407 - 9,826,994 (-)	NCBI		Celera
Cytogenetic Map	19	p13	NCBI

Katnb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	15,345,246 - 15,366,039 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	15,345,246 - 15,365,986 (+)	NCBI	ChiLan1.0	ChiLan1.0

KATNB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	67,205,818 - 67,228,247 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	73,126,749 - 73,149,164 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	38,011,804 - 38,034,015 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	57,142,912 - 57,165,426 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	57,143,472 - 57,165,426 (+)	Ensembl	panpan1.1		panPan2

KATNB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	58,734,875 - 58,755,515 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	58,734,893 - 58,755,477 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	55,364,660 - 55,385,336 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	59,273,227 - 59,293,915 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	59,273,227 - 59,292,927 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	56,104,955 - 56,125,637 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	57,112,437 - 57,133,123 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	58,005,758 - 58,026,434 (-)	NCBI		UU_Cfam_GSD_1.0

Katnb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	49,831,461 - 49,851,830 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	9,738,195 - 9,757,614 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	9,737,974 - 9,757,614 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KATNB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	19,630,447 - 19,659,043 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	19,630,355 - 19,659,039 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	17,703,623 - 17,719,166 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Katnb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	28,360,730 - 28,381,673 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	28,360,461 - 28,381,545 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007993477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007993479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007993480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007993481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000002883 ⟹ ENSCSAP00000001173

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	5	43,666,940 - 43,687,807 (+)	Ensembl

RefSeq Acc Id:

XM_007993477 ⟹ XP_007991668

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	43,666,892 - 43,688,109 (+)	NCBI
Vero_WHO_p1.0	NW_023666047	32,491,471 - 32,513,027 (-)	NCBI

Sequence:

show sequence

TTTTGTTGTGAGGGTCGGTTGTCAAGCAGCGGCCAATCAGGGCAGGGGATGGAGGCAAGTGGGG
GTCGCGCCTGGAGCAGAGCCTCGGCCTCCGGAGCCGCAGCTGCAGCCCGGTACTGAGCTGAGAT
GGCTCAAGCCTAACATCCCATGATCCAGGATCGTGACAGATGTGCACAGGCTGCTGTTCTTGCT
GCTGTGGGTGATTTGGAACCACGAGGCAGCCCACAACCAGAAGACGAGGCATTCTCCCTGCCTG
GATGTGTGGGAACTCTCTGCCAACTTGATTGGTGGATCTGGGGGGGATCCACCCCCACCCCACG
AGGAAAGCACAGTTTATTTTGTGGGTGGGGCTTCAGGTGGCCAGCCAGCTGAAGGATGGCCACT
CCTGTGGTCACCAAGACAGCCTGGAAGTTGCAAGAGATCGTCGCACATGCCAGCAATGTGTCCT
CACTGGTGCTGGGCAAAGGCTCCGGGCGGCTGCTGGCTACAGGCGGGGATGACTGCCGCGTCAA
CCTGTGGTCCATCAACAAGCCCAACTGCATCATGAGCCTGACGGGCCACACGTCCCCAGTGGAG
AGCGTCCGCCTCAACACCCCTGAGGAGCTCATCGTGGCTGGCTCCCAGTCAGGCTCCATCCGTG
TCTGGGACCTGGAAGCTGCCAAAATTCTTCGCACACTCATGGGACACAAAGCCAACATCTGCAG
CCTGGATTTCCACCCGTATGGCGAGTTCGTAGCCTCCGGTTCCCAGGACACGAACATCAAGCTC
TGGGACATCAGGAGGAAAGGCTGTGTCTTCCGATACAGGGGGCACAGCCAGGCCGTGCGGTGTC
TCCGGTTCAGCCCTGATGGGAAGTGGTTGGCGTCGGCTGCAGATGACCACACCGTGAAGCTCTG
GGATCTCACTGCCGGCAAGATGATGTCTGAGTTCCCTGGTCACACGGGGCCTGTCAACGTGGTC
GAGTTTCACCCCAATGAGTACCTCCTGGCCTCCGGCAGCTCTGACAGGACAATCCGTTTCTGGG
ACCTGGAGAAGTTCCAGGTGGTGAGCTGCATCGAAGGGGAGCCTGGGCCTGTCAGGAGCGTCCT
GTTCAACCCCGACGGCTGCTGCCTGTACAGCGGCTGCCAGGACTCGCTGCGTGTCTACGGCTGG
GAACCTGAGCGGTGCTTTGATGTGGTCCTCGTCAACTGGGGCAAGGTGGCCGACCTGGCCATCT
GCAATGACCAGTTGATAGGTGTGGCCTTCTCCCAGAGCAACGTCTCCTCCTACGTGGTGGATCT
GACACGTGTCACCAGGACTGGCACGGTGACCCGGGACCCTGTGCAGGACCACCGACCCCTGGCA
CAGCCACCACCCAACCCCAGTGCCCCACTCCGGCGCATCTACGAGCGGCCCAGCACAACCTGCA
GCAAGCCTCAGAGGGTGAAGCAGAACTCAGAGAGCGAGCGCCGCAGCCCCAGCAGTGAGGATGA
CCGGGACGAGCGCGAGTCCCGCGCGGAGATCCAGAACGCCGAGGACTACAACGAGATCTTTCAG
CCCAAGAACAGCATCAGCCGGACACCACCCCGGAGAAGTGAACCCTTCCCTGCACCCCCAGAGG
ACGGTGAGTTGGATGCAGCCACAGCAAAGGAGGCAGCAAAGCCCAGCTCTGCCATGGATGTGCA
GTTCCCAGTGCCAAACCTGGAGGTCCTGCCCCGGCCCCCGGTGGTTGCTTCCACACCTGCACCC
AAGGCTGAGCCTGCCATCATCCCTGCCACCCGGAATGAGCCCATCGGGCTGAAGGCCTCCGACT
TCCTGCCCGCCGTGAAGATCCCCCAGCAGGCTGAGCTGGTGGACGAGGATGCCATGTCACAGAT
CCGCAAAGGCCACGACACCATGTGTGTGGTGCTCACCAGCCGCCACAAGAACCTGGACACCGTG
CGGGCTGTGTGGACCACGGGCGACATCAAGACGTCGGTGGACTCCGCTGTGGCCATCAACGACC
TGTCGGTGGTGGTGGACCTCCTGAACATCGTCAACCAGAAAGCCTCCCTGTGGAAGCTGGACCT
GTGCACCACGGTCCTGCCACAGATCGAGAAGCTTCTGCAAAGCAAGTATGAGAGCTACGTCCAG
ACGGGCTGCACCTCCCTGAAGCTGATCCTGCAGCGGTTTCTGCCCCTCATCACGGACATGCTGG
CGGCCCCGCCCTCCGTGGGTGTGGATATCAGTAGGGAGGAGAGGCTGCACAAGTGCCGACTCTG
CTACAAGCAGCTCAAGAGCATCAGCGGCCTGGTCAAGAGCAAGTCGGGCCTGAGTGGCCGCCAC
GGCAGTACTTTCCGCGAGCTGCACCTGCTCATGGCCAGTCTGGACTGAGGAACGCAGTGGGCAG
GGGCGCTTGGCTGCCCTCAGGGCCTGGCCTCAGCCCCCACTCCTGTTCCTTGTGTGCCTAGTGG
CCCATGAGCCTCTGCCTGGCCCCTGCCACTGTCCTGTGGCCGTCCTGGAGGAGGTGACGCTGGT
CCCTGGCCACCTCTACAGCCCTGAACTCTGAGACAACTCTCTCCAGCAATAGCTGCCCAGCTTT
GCCCAACCGTTGCTTCTTGGGGCAGCGAACTGAGCCCTGGGGCTGCTGCTGTAATTTATAAGGC
AAATTTTATTAAATTTGTAACTATTCCCAG

hide sequence

RefSeq Acc Id:

XM_007993479 ⟹ XP_007991670

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	43,667,019 - 43,688,109 (+)	NCBI
Vero_WHO_p1.0	NW_023666047	32,491,471 - 32,512,866 (-)	NCBI

Sequence:

show sequence

CGAGGTGGCGAGGGGACGGTGGGCCCTGGGCTGGGCCGAGCCAGGCGGGACTGGCCGGGCTTGC
GGGCAGAGAGCTCTGGGCGTGGGGAGGCTAGAGCCCATACTCCGCAAGCAGAGGGTTGAGAGGA
TCAGCTGAGGCCGAGCCCGGTACTGAGCTGAGATGGCTCAAGCCTAACATCCCATGATCCAGGA
TCGTGACAGATGTGCACAGGCTGCTGTTCTTGCTGCTGTGGGTGATTTGGAACCACGAGGCAGC
CCACAACCAGAAGACGAGGCATTCTCCCTGCCTGGATGTGTGGGAACTCTCTGCCAACTTGATT
GGTGGATCTGGGGGGGATCCACCCCCACCCCACGAGGAAAGCACAGTTTATTTTGTGGGTGGGG
CTTCAGGTGGCCAGCCAGCTGAAGGATGGCCACTCCTGTGGTCACCAAGACAGCCTGGAAGTTG
CAAGAGATCGTCGCACATGCCAGCAATGTGTCCTCACTGGTGCTGGGCAAAGGCTCCGGGCGGC
TGCTGGCTACAGGCGGGGATGACTGCCGCGTCAACCTGTGGTCCATCAACAAGCCCAACTGCAT
CATGAGCCTGACGGGCCACACGTCCCCAGTGGAGAGCGTCCGCCTCAACACCCCTGAGGAGCTC
ATCGTGGCTGGCTCCCAGTCAGGCTCCATCCGTGTCTGGGACCTGGAAGCTGCCAAAATTCTTC
GCACACTCATGGGACACAAAGCCAACATCTGCAGCCTGGATTTCCACCCGTATGGCGAGTTCGT
AGCCTCCGGTTCCCAGGACACGAACATCAAGCTCTGGGACATCAGGAGGAAAGGCTGTGTCTTC
CGATACAGGGGGCACAGCCAGGCCGTGCGGTGTCTCCGGTTCAGCCCTGATGGGAAGTGGTTGG
CGTCGGCTGCAGATGACCACACCGTGAAGCTCTGGGATCTCACTGCCGGCAAGATGATGTCTGA
GTTCCCTGGTCACACGGGGCCTGTCAACGTGGTCGAGTTTCACCCCAATGAGTACCTCCTGGCC
TCCGGCAGCTCTGACAGGACAATCCGTTTCTGGGACCTGGAGAAGTTCCAGGTGGTGAGCTGCA
TCGAAGGGGAGCCTGGGCCTGTCAGGAGCGTCCTGTTCAACCCCGACGGCTGCTGCCTGTACAG
CGGCTGCCAGGACTCGCTGCGTGTCTACGGCTGGGAACCTGAGCGGTGCTTTGATGTGGTCCTC
GTCAACTGGGGCAAGGTGGCCGACCTGGCCATCTGCAATGACCAGTTGATAGGTGTGGCCTTCT
CCCAGAGCAACGTCTCCTCCTACGTGGTGGATCTGACACGTGTCACCAGGACTGGCACGGTGAC
CCGGGACCCTGTGCAGGACCACCGACCCCTGGCACAGCCACCACCCAACCCCAGTGCCCCACTC
CGGCGCATCTACGAGCGGCCCAGCACAACCTGCAGCAAGCCTCAGAGGGTGAAGCAGAACTCAG
AGAGCGAGCGCCGCAGCCCCAGCAGTGAGGATGACCGGGACGAGCGCGAGTCCCGCGCGGAGAT
CCAGAACGCCGAGGACTACAACGAGATCTTTCAGCCCAAGAACAGCATCAGCCGGACACCACCC
CGGAGAAGTGAACCCTTCCCTGCACCCCCAGAGGACGGTGAGTTGGATGCAGCCACAGCAAAGG
AGGCAGCAAAGCCCAGCTCTGCCATGGATGTGCAGTTCCCAGTGCCAAACCTGGAGGTCCTGCC
CCGGCCCCCGGTGGTTGCTTCCACACCTGCACCCAAGGCTGAGCCTGCCATCATCCCTGCCACC
CGGAATGAGCCCATCGGGCTGAAGGCCTCCGACTTCCTGCCCGCCGTGAAGATCCCCCAGCAGG
CTGAGCTGGTGGACGAGGATGCCATGTCACAGATCCGCAAAGGCCACGACACCATGTGTGTGGT
GCTCACCAGCCGCCACAAGAACCTGGACACCGTGCGGGCTGTGTGGACCACGGGCGACATCAAG
ACGTCGGTGGACTCCGCTGTGGCCATCAACGACCTGTCGGTGGTGGTGGACCTCCTGAACATCG
TCAACCAGAAAGCCTCCCTGTGGAAGCTGGACCTGTGCACCACGGTCCTGCCACAGATCGAGAA
GCTTCTGCAAAGCAAGTATGAGAGCTACGTCCAGACGGGCTGCACCTCCCTGAAGCTGATCCTG
CAGCGGTTTCTGCCCCTCATCACGGACATGCTGGCGGCCCCGCCCTCCGTGGGTGTGGATATCA
GTAGGGAGGAGAGGCTGCACAAGTGCCGACTCTGCTACAAGCAGCTCAAGAGCATCAGCGGCCT
GGTCAAGAGCAAGTCGGGCCTGAGTGGCCGCCACGGCAGTACTTTCCGCGAGCTGCACCTGCTC
ATGGCCAGTCTGGACTGAGGAACGCAGTGGGCAGGGGCGCTTGGCTGCCCTCAGGGCCTGGCCT
CAGCCCCCACTCCTGTTCCTTGTGTGCCTAGTGGCCCATGAGCCTCTGCCTGGCCCCTGCCACT
GTCCTGTGGCCGTCCTGGAGGAGGTGACGCTGGTCCCTGGCCACCTCTACAGCCCTGAACTCTG
AGACAACTCTCTCCAGCAATAGCTGCCCAGCTTTGCCCAACCGTTGCTTCTTGGGGCAGCGAAC
TGAGCCCTGGGGCTGCTGCTGTAATTTATAAGGCAAATTTTATTAAATTTGTAACTATTCCCAG

hide sequence

RefSeq Acc Id:

XM_007993480 ⟹ XP_007991671

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	43,666,892 - 43,688,110 (+)	NCBI
Vero_WHO_p1.0	NW_023666047	32,491,471 - 32,513,027 (-)	NCBI

Sequence:

show sequence

TTTTGTTGTGAGGGTCGGTTGTCAAGCAGCGGCCAATCAGGGCAGGGGATGGAGGCAAGTGGGG
GTCGCGCCTGGAGCAGAGCCTCGGCCTCCGGAGCCGCAGCTGCAGCCCGGTACTGAGCTGAGAT
GGCTCAAGCCTAACATCCCATGATCCAGGATCGTGACAGATGTGCACAGGCTGCTGTTCTTGCT
GCTGTGGGTGATTTGGAACCACGAGGCAGCCCACAACCAGAAGACGAGGCATTCTCCCTGCCTG
GATGTGTGGGAACTCTCTGCCAACTTGATTGGTGGATCTGGGGGGGATCCACCCCCACCCCACG
AGGAAAGCACAGTTTATTTTGTGGGTGGGGCTTCAGGTGGCCAGCCAGCTGAAGGATGGCCACT
CCTGTGGTCACCAAGACAGCCTGGAAGTTGCAAGAGATCGTCGCACATGCCAGCAATGTGTCCT
CACTGGTGCTGGGCAAAGGCTCCGGGCGGCTGCTGGCTACAGGCGGGGATGACTGCCGCGTCAA
CCTGTGGTCCATCAACAAGCCCAACTGCATCATGAGCCTGACGGGCCACACGTCCCCAGTGGAG
AGCGTCCGCCTCAACACCCCTGAGGAGCTCATCGTGGCTGGCTCCCAGTCAGGCTCCATCCGTG
TCTGGGACCTGGAAGCTGCCAAAATTCTTCGCACACTCATGGGACACAAAGCCAACATCTGCAG
CCTGGATTTCCACCCGTATGGCGAGTTCGTAGCCTCCGGTTCCCAGGACACGAACATCAAGCTC
TGGGACATCAGGAGGAAAGGCTGTGTCTTCCGATACAGGGGGCACAGCCAGGCCGTGCGGTGTC
TCCGGTTCAGCCCTGATGGGAAGTGGTTGGCGTCGGCTGCAGATGACCACACCGTGAAGCTCTG
GGATCTCACTGCCGGCAAGATGATGTCTGAGTTCCCTGGTCACACGGGGCCTGTCAACGTGGTC
GAGTTTCACCCCAATGAGTACCTCCTGGCCTCCGGCAGCTCTGACAGGACAATCCGTTTCTGGG
ACCTGGAGAAGTTCCAGGTGGTGAGCTGCATCGAAGGGGAGCCTGGGCCTGTCAGGAGCGTCCT
GTTCAACCCCGACGGCTGCTGCCTGTACAGCGGCTGCCAGGACTCGCTGCGTGTCTACGGCTGG
GAACCTGAGCGGTGCTTTGATGTGGTCCTCGTCAACTGGGGCAAGGTGGCCGACCTGGCCATCT
GCAATGACCAGTTGATAGGTGTGGCCTTCTCCCAGAGCAACGTCTCCTCCTACGTGGTGGATCT
GACACGTGTCACCAGGACTGGCACGGTGACCCGGGACCCTGTGCAGGACCACCGACCCCTGGCA
CAGCCACCACCCAACCCCAGTGCCCCACTCCGGCGCATCTACGAGCGGCCCAGCACAACCTGCA
GCAAGCCTCAGAGGGTGAAGCAGAACTCAGAGAGCGAGCGCCGCAGCCCCAGCAGTGAGGATGA
CCGGGACGAGCGCGAGTCCCGCGCGGAGATCCAGAACGCCGAGGACTACAACGAGATCTTTCAG
CCCAAGAACAGCATCAGCCGGACACCACCCCGGAGAAGTGAACCCTTCCCTGCACCCCCAGAGG
ACGATGCAGCCACAGCAAAGGAGGCAGCAAAGCCCAGCTCTGCCATGGATGTGCAGTTCCCAGT
GCCAAACCTGGAGGTCCTGCCCCGGCCCCCGGTGGTTGCTTCCACACCTGCACCCAAGGCTGAG
CCTGCCATCATCCCTGCCACCCGGAATGAGCCCATCGGGCTGAAGGCCTCCGACTTCCTGCCCG
CCGTGAAGATCCCCCAGCAGGCTGAGCTGGTGGACGAGGATGCCATGTCACAGATCCGCAAAGG
CCACGACACCATGTGTGTGGTGCTCACCAGCCGCCACAAGAACCTGGACACCGTGCGGGCTGTG
TGGACCACGGGCGACATCAAGACGTCGGTGGACTCCGCTGTGGCCATCAACGACCTGTCGGTGG
TGGTGGACCTCCTGAACATCGTCAACCAGAAAGCCTCCCTGTGGAAGCTGGACCTGTGCACCAC
GGTCCTGCCACAGATCGAGAAGCTTCTGCAAAGCAAGTATGAGAGCTACGTCCAGACGGGCTGC
ACCTCCCTGAAGCTGATCCTGCAGCGGTTTCTGCCCCTCATCACGGACATGCTGGCGGCCCCGC
CCTCCGTGGGTGTGGATATCAGTAGGGAGGAGAGGCTGCACAAGTGCCGACTCTGCTACAAGCA
GCTCAAGAGCATCAGCGGCCTGGTCAAGAGCAAGTCGGGCCTGAGTGGCCGCCACGGCAGTACT
TTCCGCGAGCTGCACCTGCTCATGGCCAGTCTGGACTGAGGAACGCAGTGGGCAGGGGCGCTTG
GCTGCCCTCAGGGCCTGGCCTCAGCCCCCACTCCTGTTCCTTGTGTGCCTAGTGGCCCATGAGC
CTCTGCCTGGCCCCTGCCACTGTCCTGTGGCCGTCCTGGAGGAGGTGACGCTGGTCCCTGGCCA
CCTCTACAGCCCTGAACTCTGAGACAACTCTCTCCAGCAATAGCTGCCCAGCTTTGCCCAACCG
TTGCTTCTTGGGGCAGCGAACTGAGCCCTGGGGCTGCTGCTGTAATTTATAAGGCAAATTTTAT
TAAATTTGTAACTATTCCCAGG

hide sequence

RefSeq Acc Id:

XM_007993481 ⟹ XP_007991672

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	5	43,675,589 - 43,688,109 (+)	NCBI
Vero_WHO_p1.0	NW_023666047	32,491,471 - 32,504,311 (-)	NCBI

Sequence:

show sequence

CGCGCACCTGCCTTAGTCTTCAGGCTCTGCAGTTGTGCCACTTCCTCCAGGAAGCCTGCCTGGA
CTAGTTCTTCGCACACTCATGGGACACAAAGCCAACATCTGCAGCCTGGATTTCCACCCGTATG
GCGAGTTCGTAGCCTCCGGTTCCCAGGACACGAACATCAAGCTCTGGGACATCAGGAGGAAAGG
CTGTGTCTTCCGATACAGGGGGCACAGCCAGGCCGTGCGGTGTCTCCGGTTCAGCCCTGATGGG
AAGTGGTTGGCGTCGGCTGCAGATGACCACACCGTGAAGCTCTGGGATCTCACTGCCGGCAAGA
TGATGTCTGAGTTCCCTGGTCACACGGGGCCTGTCAACGTGGTCGAGTTTCACCCCAATGAGTA
CCTCCTGGCCTCCGGCAGCTCTGACAGGACAATCCGTTTCTGGGACCTGGAGAAGTTCCAGGTG
GTGAGCTGCATCGAAGGGGAGCCTGGGCCTGTCAGGAGCGTCCTGTTCAACCCCGACGGCTGCT
GCCTGTACAGCGGCTGCCAGGACTCGCTGCGTGTCTACGGCTGGGAACCTGAGCGGTGCTTTGA
TGTGGTCCTCGTCAACTGGGGCAAGGTGGCCGACCTGGCCATCTGCAATGACCAGTTGATAGGT
GTGGCCTTCTCCCAGAGCAACGTCTCCTCCTACGTGGTGGATCTGACACGTGTCACCAGGACTG
GCACGGTGACCCGGGACCCTGTGCAGGACCACCGACCCCTGGCACAGCCACCACCCAACCCCAG
TGCCCCACTCCGGCGCATCTACGAGCGGCCCAGCACAACCTGCAGCAAGCCTCAGAGGGTGAAG
CAGAACTCAGAGAGCGAGCGCCGCAGCCCCAGCAGTGAGGATGACCGGGACGAGCGCGAGTCCC
GCGCGGAGATCCAGAACGCCGAGGACTACAACGAGATCTTTCAGCCCAAGAACAGCATCAGCCG
GACACCACCCCGGAGAAGTGAACCCTTCCCTGCACCCCCAGAGGACGGTGAGTTGGATGCAGCC
ACAGCAAAGGAGGCAGCAAAGCCCAGCTCTGCCATGGATGTGCAGTTCCCAGTGCCAAACCTGG
AGGTCCTGCCCCGGCCCCCGGTGGTTGCTTCCACACCTGCACCCAAGGCTGAGCCTGCCATCAT
CCCTGCCACCCGGAATGAGCCCATCGGGCTGAAGGCCTCCGACTTCCTGCCCGCCGTGAAGATC
CCCCAGCAGGCTGAGCTGGTGGACGAGGATGCCATGTCACAGATCCGCAAAGGCCACGACACCA
TGTGTGTGGTGCTCACCAGCCGCCACAAGAACCTGGACACCGTGCGGGCTGTGTGGACCACGGG
CGACATCAAGACGTCGGTGGACTCCGCTGTGGCCATCAACGACCTGTCGGTGGTGGTGGACCTC
CTGAACATCGTCAACCAGAAAGCCTCCCTGTGGAAGCTGGACCTGTGCACCACGGTCCTGCCAC
AGATCGAGAAGCTTCTGCAAAGCAAGTATGAGAGCTACGTCCAGACGGGCTGCACCTCCCTGAA
GCTGATCCTGCAGCGGTTTCTGCCCCTCATCACGGACATGCTGGCGGCCCCGCCCTCCGTGGGT
GTGGATATCAGTAGGGAGGAGAGGCTGCACAAGTGCCGACTCTGCTACAAGCAGCTCAAGAGCA
TCAGCGGCCTGGTCAAGAGCAAGTCGGGCCTGAGTGGCCGCCACGGCAGTACTTTCCGCGAGCT
GCACCTGCTCATGGCCAGTCTGGACTGAGGAACGCAGTGGGCAGGGGCGCTTGGCTGCCCTCAG
GGCCTGGCCTCAGCCCCCACTCCTGTTCCTTGTGTGCCTAGTGGCCCATGAGCCTCTGCCTGGC
CCCTGCCACTGTCCTGTGGCCGTCCTGGAGGAGGTGACGCTGGTCCCTGGCCACCTCTACAGCC
CTGAACTCTGAGACAACTCTCTCCAGCAATAGCTGCCCAGCTTTGCCCAACCGTTGCTTCTTGG
GGCAGCGAACTGAGCCCTGGGGCTGCTGCTGTAATTTATAAGGCAAATTTTATTAAATTTGTAA
CTATTCCCAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_007991668	(Get FASTA)	NCBI Sequence Viewer
	XP_007991670	(Get FASTA)	NCBI Sequence Viewer
	XP_007991671	(Get FASTA)	NCBI Sequence Viewer
	XP_007991672	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000001173.1

RefSeq Acc Id:	XP_007991671 ⟸ XM_007993480
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9QXT4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007991668 ⟸ XM_007993477
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9QXT4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007991670 ⟸ XM_007993479
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9QXT4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007991672 ⟸ XM_007993481
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSCSAP00000001173 ⟸ ENSCSAT00000002883

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000004849	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000002883.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	G-protein_beta_WD-40_rep	UniProtKB/TrEMBL
	Katanin_bsu1	UniProtKB/TrEMBL
	Katanin_C-terminal	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
NCBI Gene	KATNB1	ENTREZGENE
PANTHER	KATANIN P80 SUBUNIT	UniProtKB/TrEMBL
	KATANIN P80 WD40 REPEAT-CONTAINING SUBUNIT B1	UniProtKB/TrEMBL
Pfam	Katanin_con80	UniProtKB/TrEMBL
	WD40	UniProtKB/TrEMBL
PRINTS	GPROTEINBRPT	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_1	UniProtKB/TrEMBL
	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	A0A0D9QXT4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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