STARD10 (StAR related lipid transfer domain containing 10) - Rat Genome Database

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Gene: STARD10 (StAR related lipid transfer domain containing 10) Chlorocebus sabaeus
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Symbol: STARD10
Name: StAR related lipid transfer domain containing 10
RGD ID: 18466748
Description: ENCODES a protein that exhibits lipid binding (inferred); INVOLVED IN bile acid secretion (ortholog); positive regulation of peroxisome proliferator activated receptor signaling pathway (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytosol (inferred); intercellular canaliculus (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PCTP-like protein; START domain-containing protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,993,578 - 64,032,849 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,991,312 - 64,020,610 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604361,848,350 - 61,890,628 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
STARD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1163,993,578 - 64,032,849 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl163,991,312 - 64,020,610 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604361,848,350 - 61,890,628 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
STARD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,754,729 - 72,794,047 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1172,754,729 - 72,794,047 (-)EnsemblGRCh38hg38GRCh38
GRCh371172,465,774 - 72,505,092 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361172,143,422 - 72,182,398 (-)NCBINCBI36Build 36hg18NCBI36
Build 341172,143,531 - 72,181,939NCBI
Celera1169,770,308 - 69,809,280 (-)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1168,761,026 - 68,799,891 (-)NCBIHuRef
CHM1_11172,349,079 - 72,388,485 (-)NCBICHM1_1
T2T-CHM13v2.01172,682,966 - 72,722,274 (-)NCBIT2T-CHM13v2.0
Stard10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397100,966,293 - 100,995,833 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7100,966,293 - 100,995,833 (+)EnsemblGRCm39 Ensembl
GRCm387101,317,086 - 101,346,626 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7101,317,086 - 101,346,626 (+)EnsemblGRCm38mm10GRCm38
MGSCv377108,469,833 - 108,494,826 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367101,191,206 - 101,220,133 (+)NCBIMGSCv36mm8
Celera7101,679,898 - 101,704,754 (+)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.55NCBI
Stard10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,130,408 - 165,159,134 (+)NCBIGRCr8
mRatBN7.21155,722,637 - 155,748,007 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,718,389 - 155,747,094 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1163,707,522 - 163,732,004 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01170,887,610 - 170,912,099 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01163,771,816 - 163,796,241 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01166,428,780 - 166,458,413 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,428,761 - 166,457,509 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01172,618,137 - 172,648,410 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,819,970 - 158,845,081 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11158,898,986 - 158,924,097 (+)NCBI
Celera1153,805,181 - 153,829,492 (+)NCBICelera
Cytogenetic Map1q32NCBI
Stard10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541418,641,346 - 18,666,381 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541418,641,346 - 18,664,886 (+)NCBIChiLan1.0ChiLan1.0
STARD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2973,702,402 - 73,738,079 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11174,745,853 - 74,783,989 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01167,834,011 - 67,873,349 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11171,055,982 - 71,095,076 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1171,055,982 - 71,095,076 (-)Ensemblpanpan1.1panPan2
STARD10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12125,439,189 - 25,466,614 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2125,433,208 - 25,466,583 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2125,209,323 - 25,236,695 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02125,646,781 - 25,674,166 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2125,650,032 - 25,674,135 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12125,439,027 - 25,466,372 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02125,642,300 - 25,669,655 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02125,555,701 - 25,583,079 (+)NCBIUU_Cfam_GSD_1.0
Stard10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494760,419,200 - 60,456,340 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364982,018,531 - 2,044,877 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364982,018,736 - 2,044,897 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl97,302,814 - 7,332,770 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.197,302,811 - 7,346,703 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.298,064,136 - 8,098,573 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Stard10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248174,171,599 - 4,200,415 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248174,174,867 - 4,198,785 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 29 31
Low 7 18 29
Below cutoff 2

Sequence


RefSeq Acc Id: ENSCSAT00000002140   ⟹   ENSCSAP00000000468
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl163,991,312 - 64,020,610 (-)Ensembl
RefSeq Acc Id: XM_008020047   ⟹   XP_008018238
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1163,993,578 - 64,021,123 (-)NCBI
Vero_WHO_p1.0NW_02366604361,860,993 - 61,890,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008020048   ⟹   XP_008018239
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1163,993,578 - 64,032,509 (-)NCBI
Vero_WHO_p1.0NW_02366604361,848,350 - 61,890,628 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008018238 (Get FASTA)   NCBI Sequence Viewer  
  XP_008018239 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000468
  ENSCSAP00000000468.1
RefSeq Acc Id: XP_008018239   ⟸   XM_008020048
- UniProtKB: A0A0D9QVS9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008018238   ⟸   XM_008020047
- UniProtKB: A0A0D9QVS9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000000468   ⟸   ENSCSAT00000002140


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004111 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002140.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.530.20 UniProtKB/TrEMBL
InterPro STARD10_START UniProtKB/TrEMBL
  START-like_dom_sf UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/TrEMBL
NCBI Gene STARD10 ENTREZGENE
PANTHER PHOSPHATIDYLCHOLINE TRANSFER PROTEIN UniProtKB/TrEMBL
  START DOMAIN-CONTAINING PROTEIN 10 UniProtKB/TrEMBL
Pfam START UniProtKB/TrEMBL
PROSITE START UniProtKB/TrEMBL
SMART START UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
UniProt A0A0D9QVS9 ENTREZGENE, UniProtKB/TrEMBL