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Gene: Stard10 (StAR related lipid transfer domain containing 10) Ictidomys tridecemlineatus

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Symbol:

Stard10

Name:

StAR related lipid transfer domain containing 10

RGD ID:

12443244

Description:

ENCODES a protein that exhibits lipid binding (inferred); INVOLVED IN bile acid secretion (ortholog); positive regulation of peroxisome proliferator activated receptor signaling pathway (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); intellectual disability (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); intercellular canaliculus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

START domain-containing protein 10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	60,419,200 - 60,456,340 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936498	2,018,531 - 2,044,877 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936498	2,018,736 - 2,044,897 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Stard10	Squirrel	3-methylglutaconic aciduria type 7b		ISO	STARD10 (Homo sapiens)	8554872	ClinVar Annotator: match by term: 3-methylglutaconic aciduria and type VIIB	ClinVar	PMID:28492532
Stard10	Squirrel	intellectual disability		ISO	STARD10 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability	ClinVar

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Stard10	Squirrel	Prostatic Neoplasms		ISO	STARD10 (Homo sapiens)	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:17013881

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Stard10	Squirrel	bile acid secretion	acts_upstream_of_or_within	ISO	MGI:5500937	9068941	PMID:23200860	MGI	PMID:23200860
Stard10	Squirrel	positive regulation of peroxisome proliferator activated receptor signaling pathway	acts_upstream_of_or_within	ISO	Stard10 (Mus musculus)	9068941	PMID:23200860	MGI	PMID:23200860

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Stard10	Squirrel	cytoplasm	located_in	IEA	ARBA:ARBA00026971	150520179		UniProt	GO_REF:0000117
Stard10	Squirrel	cytosol	located_in	IEA	UniProtKB:Q9Y365 and ensembl:ENSP00000335247	150520179		Ensembl	GO_REF:0000107
Stard10	Squirrel	cytosol	located_in	IEA	PANTHER:PTN000448268	150520179		TreeGrafter	GO_REF:0000118
Stard10	Squirrel	intercellular canaliculus	located_in	IEA	PANTHER:PTN000448268	150520179		TreeGrafter	GO_REF:0000118
Stard10	Squirrel	membrane	located_in	IEA	PANTHER:PTN000448268	150520179		TreeGrafter	GO_REF:0000118
Stard10	Squirrel	microvillus	located_in	IEA	PANTHER:PTN000448268	150520179		TreeGrafter	GO_REF:0000118

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Stard10	Squirrel	lipid binding	enables	IEA	InterPro:IPR002913	150520179		InterPro	GO_REF:0000002
Stard10	Squirrel	protein binding	enables	ISO	UniProtKB:Q96LA8	9068941	PMID:23455924	IntAct	PMID:23455924

PMID:22301074

Stard10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	60,419,200 - 60,456,340 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936498	2,018,531 - 2,044,877 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936498	2,018,736 - 2,044,897 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STARD10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	72,754,729 - 72,794,047 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	72,754,729 - 72,794,047 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	72,465,774 - 72,505,092 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	72,143,422 - 72,182,398 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	72,143,531 - 72,181,939	NCBI
Celera	11	69,770,308 - 69,809,280 (-)	NCBI		Celera
Cytogenetic Map	11	q13.4	NCBI
HuRef	11	68,761,026 - 68,799,891 (-)	NCBI		HuRef
CHM1_1	11	72,349,079 - 72,388,485 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	72,682,966 - 72,722,274 (-)	NCBI		T2T-CHM13v2.0

Stard10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	100,966,293 - 100,995,833 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	100,966,293 - 100,995,833 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	101,317,086 - 101,346,626 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	101,317,086 - 101,346,626 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	108,469,833 - 108,494,826 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	101,191,206 - 101,220,133 (+)	NCBI		MGSCv36	mm8
Celera	7	101,679,898 - 101,704,754 (+)	NCBI		Celera
Cytogenetic Map	7	E2	NCBI
cM Map	7	54.55	NCBI

Stard10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	165,130,408 - 165,159,134 (+)	NCBI		GRCr8
mRatBN7.2	1	155,722,637 - 155,748,007 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	155,718,389 - 155,747,094 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	163,707,522 - 163,732,004 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	170,887,610 - 170,912,099 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	163,771,816 - 163,796,241 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	166,428,780 - 166,458,413 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	166,428,761 - 166,457,509 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	172,618,137 - 172,648,410 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	158,819,970 - 158,845,081 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	158,898,986 - 158,924,097 (+)	NCBI
Celera	1	153,805,181 - 153,829,492 (+)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

Stard10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	18,641,346 - 18,666,381 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	18,641,346 - 18,664,886 (+)	NCBI	ChiLan1.0	ChiLan1.0

STARD10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	73,702,402 - 73,738,079 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	74,745,853 - 74,783,989 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	67,834,011 - 67,873,349 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	71,055,982 - 71,095,076 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	71,055,982 - 71,095,076 (-)	Ensembl	panpan1.1		panPan2

STARD10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	25,439,189 - 25,466,614 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	25,433,208 - 25,466,583 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	25,209,323 - 25,236,695 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	25,646,781 - 25,674,166 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	25,650,032 - 25,674,135 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	25,439,027 - 25,466,372 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	25,642,300 - 25,669,655 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	25,555,701 - 25,583,079 (+)	NCBI		UU_Cfam_GSD_1.0

STARD10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	7,302,814 - 7,332,770 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	7,302,811 - 7,346,703 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	8,064,136 - 8,098,573 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STARD10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	63,993,578 - 64,032,849 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	63,991,312 - 64,020,610 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	61,848,350 - 61,890,628 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stard10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624817	4,171,599 - 4,200,415 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624817	4,174,867 - 4,198,785 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005323166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000021008 ⟹ ENSSTOP00000017706

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936498	2,018,531 - 2,044,877 (-)	Ensembl

RefSeq Acc Id:

XM_005323166 ⟹ XP_005323223

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	60,419,200 - 60,445,344 (-)	NCBI
SpeTri2.0	NW_004936498	2,018,736 - 2,044,897 (-)	NCBI

Sequence:

show sequence

TCCCCAAACCGGTCTTGCAGGTCCCAGGAAGGTGGCGTCAGCATCTGCAACCGCGTCGACAACGTTGTCGGAGCCTCCGCGAAGGACCCAGGAGAACCGGACTAGGACCAAGGTGCTGGGCCTCCCCT
CTTTCCCAATGGAGAAGTCAGCAGCCTCAACAGAGCTTCAAGGGCCACGGCCAGTCCTGGGCCGTGAAAGTGTCCAGGTGCCGGACGACCAGGACTTCCGCAGCTTCCGGTCAGAGTGTGAGGCTGAG
GTGGGCTGGAATCTGACTTACAGCAAGGCTGGCGTGTCTGTGTGGGTGCAGGCTATGGAGATGGATCGGACTCTACACAAGATCAAGTGCCGTATGGAGTGCCGTGATGTGCCAGCAGAGACACTCTA
CGATGTCCTACATGACATTGAGTACCGAAAGAAATGGGACAGCAACGTCATTGAAACTTTCGACATCGCCCGTTTGACAGTCAACGCTGATGTGGGCTATTATTCTTGGAGGTGTCCCAAGCCTCTGA
AGAACCGTGATGTCATCACCCTCCGCTCCTGGCTCCCCATGGGCACTGATTACATCATCATGAACTACTCAGTCAAACATCCTAAATACCCACCTCGAAAAGACTTGGTCCGAGCTGTGTCCATCCAG
ACGGGCTACCTCATCCAGAGCACTGGGCCCAAGAGCTGCGTCATCACCTACCTGGCCCAGGTGGACCCCAAAGGCTCCTTACCCAAGTGGGTAGTGAATAAATCTTCTCAGTTCCTGGCTCCCAAGGC
CATGAAGAAGATGTACAAGGCATGTGTCAAGTACCCTGAGTGGAAGCAGAAGCATCAGCCACACTTCAAGCCATGGCTGCACCCAGAGCAGAGCCCATTGCCCAGCCTGGCACTGTCGGAGCTGTCAG
TGCAGCACGCAGACTCACTGGAGAACATCGATGAGAGCGCAGTGGCAGAGAGCAGGGAGGAGCGAGTGGGTGGTGCAGGTGGCGAGGGCAGTGATGATGATACCTCGCTCACCTGAGTGCAGCACTGC
TGCATGGACTGAGACCGGACTGGGGCTGAGCCCTGGGGCATGGATCCTCCTGCACTTCCTCCTGTCTCTCACCCTGCCTCCTGGGGGCCTTGGGCTGCGCCCAGGCGGCATTACAGCCTGTCTGGACA
CAGCCCCAATAAACGATCCCACAGCCTCA

hide sequence

RefSeq Acc Id:

XM_040284918 ⟹ XP_040140852

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	60,419,200 - 60,456,340 (-)	NCBI


Protein RefSeqs	XP_005323223	(Get FASTA)	NCBI Sequence Viewer
	XP_040140852	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017706.2

RefSeq Acc Id:

XP_005323223 ⟸ XM_005323166

- UniProtKB:

I3N010 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEKSAASTELQGPRPVLGRESVQVPDDQDFRSFRSECEAEVGWNLTYSKAGVSVWVQAMEMDRTLHKIKCRMECRDVPAETLYDVLHDIEYRKKWDSNVIETFDIARLTVNADVGYYSWRCPKPLKNR
DVITLRSWLPMGTDYIIMNYSVKHPKYPPRKDLVRAVSIQTGYLIQSTGPKSCVITYLAQVDPKGSLPKWVVNKSSQFLAPKAMKKMYKACVKYPEWKQKHQPHFKPWLHPEQSPLPSLALSELSVQH
ADSLENIDESAVAESREERVGGAGGEGSDDDTSLT

hide sequence

RefSeq Acc Id:	XP_040140852 ⟸ XM_040284918
- UniProtKB:	I3N010 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000017706 ⟸ ENSSTOT00000021008

Protein Domains

START

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000020779	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000021008.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.530.20	UniProtKB/TrEMBL
InterPro	STARD10_START	UniProtKB/TrEMBL
	START-like_dom_sf	UniProtKB/TrEMBL
	START_lipid-bd_dom	UniProtKB/TrEMBL
	START_lipid_transfer	UniProtKB/TrEMBL
NCBI Gene	Stard10	ENTREZGENE
PANTHER	PHOSPHATIDYLCHOLINE TRANSFER PROTEIN	UniProtKB/TrEMBL
	START DOMAIN-CONTAINING PROTEIN 10	UniProtKB/TrEMBL
Pfam	START	UniProtKB/TrEMBL
PROSITE	START	UniProtKB/TrEMBL
SMART	START	UniProtKB/TrEMBL
Superfamily-SCOP	Bet v1-like	UniProtKB/TrEMBL
UniProt	I3N010	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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