CABCOCO1 (ciliary associated calcium binding coiled-coil 1) - Rat Genome Database

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Gene: CABCOCO1 (ciliary associated calcium binding coiled-coil 1) Chlorocebus sabaeus
Analyze
Symbol: CABCOCO1
Name: ciliary associated calcium binding coiled-coil 1
RGD ID: 18455656
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); INVOLVED IN sperm flagellum assembly (ortholog); ASSOCIATED WITH Autosomal Dominant Intellectual Developmental Disorder 70 (ortholog); Hepatomegaly (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); sperm flagellum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C9H10orf107; ciliary-associated calcium-binding coiled-coil protein 1; uncharacterized protein C10orf107 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1969,514,710 - 69,619,418 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl969,514,616 - 69,618,981 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604830,399,889 - 30,504,728 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CABCOCO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1969,514,710 - 69,619,418 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl969,514,616 - 69,618,981 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604830,399,889 - 30,504,728 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CABCOCO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381061,662,929 - 61,766,766 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1061,662,929 - 61,766,766 (+)EnsemblGRCh38hg38GRCh38
GRCh371063,422,687 - 63,526,524 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361063,092,725 - 63,196,107 (+)NCBINCBI36Build 36hg18NCBI36
Build 341063,092,724 - 63,196,097NCBI
Celera1056,689,752 - 56,792,965 (+)NCBICelera
Cytogenetic Map10q21.2NCBI
HuRef1057,411,681 - 57,515,315 (+)NCBIHuRef
CHM1_11063,704,905 - 63,808,265 (+)NCBICHM1_1
T2T-CHM13v2.01062,519,703 - 62,623,652 (+)NCBIT2T-CHM13v2.0
Cabcoco1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391068,266,786 - 68,377,751 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1068,266,783 - 68,377,726 (-)EnsemblGRCm39 Ensembl
GRCm381068,430,956 - 68,541,921 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1068,430,953 - 68,541,896 (-)EnsemblGRCm38mm10GRCm38
MGSCv371067,893,704 - 68,004,623 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361067,826,313 - 67,937,232 (-)NCBIMGSCv36mm8
Celera1069,527,662 - 69,638,253 (-)NCBICelera
Cytogenetic Map10B5.2NCBI
cM Map1035.4NCBI
Cabcoco1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82020,057,462 - 20,166,732 (+)NCBIGRCr8
mRatBN7.22020,058,492 - 20,167,973 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2020,058,454 - 20,167,725 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2020,787,469 - 20,896,660 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02020,139,929 - 20,249,119 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02020,615,167 - 20,724,352 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02021,316,770 - 21,426,036 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2021,316,826 - 21,426,034 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02023,418,513 - 23,526,794 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42020,871,970 - 20,981,865 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12020,885,786 - 20,995,667 (+)NCBI
Celera2021,424,970 - 21,532,751 (+)NCBICelera
Cytogenetic Map20p11NCBI
Cabcoco1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542515,007,643 - 15,115,648 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542515,007,833 - 15,115,084 (+)NCBIChiLan1.0ChiLan1.0
CABCOCO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2873,865,952 - 73,969,690 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11073,871,239 - 73,975,012 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01058,187,953 - 58,291,787 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11060,518,657 - 60,621,981 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1060,518,684 - 60,621,981 (+)Ensemblpanpan1.1panPan2
CABCOCO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1413,687,468 - 13,804,773 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl413,687,218 - 13,803,095 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha413,893,183 - 14,010,513 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0413,951,106 - 14,068,634 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl413,951,084 - 14,067,291 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1413,939,987 - 14,057,308 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0414,055,116 - 14,176,890 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0414,420,291 - 14,537,613 (+)NCBIUU_Cfam_GSD_1.0
Cabcoco1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721367,286,518 - 67,390,083 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366141,372,788 - 1,476,508 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366141,373,873 - 1,476,470 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CABCOCO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1465,152,923 - 65,277,972 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11465,152,913 - 65,277,978 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21470,161,171 - 70,286,614 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cabcoco1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247911,943,788 - 2,058,630 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247911,945,194 - 2,058,039 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_007963336   ⟹   XP_007961527
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1969,514,710 - 69,619,418 (-)NCBI
Vero_WHO_p1.0NW_02366604830,400,046 - 30,504,728 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007963337   ⟹   XP_007961528
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1969,514,710 - 69,619,418 (-)NCBI
Vero_WHO_p1.0NW_02366604830,399,889 - 30,504,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038009185   ⟹   XP_037865113
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604830,400,319 - 30,504,478 (-)NCBI
RefSeq Acc Id: XM_038009186   ⟹   XP_037865114
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604830,447,519 - 30,504,724 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007961527 (Get FASTA)   NCBI Sequence Viewer  
  XP_007961528 (Get FASTA)   NCBI Sequence Viewer  
  XP_037865113 (Get FASTA)   NCBI Sequence Viewer  
  XP_037865114 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003673.1
RefSeq Acc Id: XP_007961528   ⟸   XM_007963337
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007961527   ⟸   XM_007963336
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037865113   ⟸   XM_038009185
- Peptide Label: isoform X3
- UniProtKB: A0A0D9R4Y4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865114   ⟸   XM_038009186
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007405 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005452.1 UniProtKB/TrEMBL
InterPro CLAMP UniProtKB/TrEMBL
NCBI Gene CABCOCO1 ENTREZGENE
PANTHER CILIARY-ASSOCIATED CALCIUM-BINDING COILED-COIL PROTEIN 1 UniProtKB/TrEMBL
  PTHR28457 UniProtKB/TrEMBL
Pfam CLAMP UniProtKB/TrEMBL
UniProt A0A0D9R4Y4 ENTREZGENE, UniProtKB/TrEMBL