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Gene: CABCOCO1 (ciliary associated calcium binding coiled-coil 1) Sus scrofa

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Symbol:

CABCOCO1

Name:

ciliary associated calcium binding coiled-coil 1

RGD ID:

14183281

Description:

ENCODES a protein that exhibits calcium ion binding (ortholog); INVOLVED IN sperm flagellum assembly (ortholog); ASSOCIATED WITH Autosomal Dominant Intellectual Developmental Disorder 70 (ortholog); Hepatomegaly (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); sperm flagellum (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C14H10orf107; chromosome 14 C10orf107 homolog; uncharacterized protein C10orf107 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	65,152,923 - 65,277,972 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	65,152,913 - 65,277,978 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	70,161,171 - 70,286,614 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Autosomal Dominant Intellectual Developmental Disorder 70 (ISO)

Hepatomegaly (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

sperm flagellum assembly (ISO)

Cellular Component

centrosome (ISO)

cytoplasm (ISO)

sperm flagellum (ISO)

Molecular Function

calcium ion binding (ISO)

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712

Genomics

Comparative Map Data

CABCOCO1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	65,152,923 - 65,277,972 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	65,152,913 - 65,277,978 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	70,161,171 - 70,286,614 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CABCOCO1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	61,662,929 - 61,766,766 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	61,662,929 - 61,766,766 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	63,422,687 - 63,526,524 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	63,092,725 - 63,196,107 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	63,092,724 - 63,196,097	NCBI
Celera	10	56,689,752 - 56,792,965 (+)	NCBI		Celera
Cytogenetic Map	10	q21.2	NCBI
HuRef	10	57,411,681 - 57,515,315 (+)	NCBI		HuRef
CHM1_1	10	63,704,905 - 63,808,265 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	62,519,703 - 62,623,652 (+)	NCBI		T2T-CHM13v2.0

Cabcoco1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	68,266,786 - 68,377,751 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	68,266,783 - 68,377,726 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	68,430,956 - 68,541,921 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	68,430,953 - 68,541,896 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	67,893,704 - 68,004,623 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	67,826,313 - 67,937,232 (-)	NCBI		MGSCv36	mm8
Celera	10	69,527,662 - 69,638,253 (-)	NCBI		Celera
Cytogenetic Map	10	B5.2	NCBI
cM Map	10	35.4	NCBI

Cabcoco1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	20,057,462 - 20,166,732 (+)	NCBI		GRCr8
mRatBN7.2	20	20,058,492 - 20,167,973 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	20,058,454 - 20,167,725 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	20,787,469 - 20,896,660 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	20,139,929 - 20,249,119 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	20,615,167 - 20,724,352 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	21,316,770 - 21,426,036 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	21,316,826 - 21,426,034 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	23,418,513 - 23,526,794 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	20,871,970 - 20,981,865 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	20,885,786 - 20,995,667 (+)	NCBI
Celera	20	21,424,970 - 21,532,751 (+)	NCBI		Celera
Cytogenetic Map	20	p11	NCBI

Cabcoco1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	15,007,643 - 15,115,648 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	15,007,833 - 15,115,084 (+)	NCBI	ChiLan1.0	ChiLan1.0

CABCOCO1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	73,865,952 - 73,969,690 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	73,871,239 - 73,975,012 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	58,187,953 - 58,291,787 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	60,518,657 - 60,621,981 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	60,518,684 - 60,621,981 (+)	Ensembl	panpan1.1		panPan2

CABCOCO1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	13,687,468 - 13,804,773 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	13,687,218 - 13,803,095 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	13,893,183 - 14,010,513 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	13,951,106 - 14,068,634 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	13,951,084 - 14,067,291 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	13,939,987 - 14,057,308 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	14,055,116 - 14,176,890 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	14,420,291 - 14,537,613 (+)	NCBI		UU_Cfam_GSD_1.0

Cabcoco1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	67,286,518 - 67,390,083 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936614	1,372,788 - 1,476,508 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936614	1,373,873 - 1,476,470 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CABCOCO1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	69,514,710 - 69,619,418 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	69,514,616 - 69,618,981 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	30,399,889 - 30,504,728 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cabcoco1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624791	1,943,788 - 2,058,630 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624791	1,945,194 - 2,058,039 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CABCOCO1
2389 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	3	23	3	2	5	11	9	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001924770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021072468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK393384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT827818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01001737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000037907 ⟹ ENSSSCP00000051337

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	65,152,923 - 65,277,972 (+)	Ensembl

RefSeq Acc Id:

XM_001924770 ⟹ XP_001924805

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	65,152,913 - 65,277,978 (+)	NCBI

Sequence:

show sequence

CCGGTTGCCTAGGTGACGAGGGGCCGCGGCGCTCTGGCGGGATCATGGCGACGTCTGTGGGAAC
GACTCCCGGGGGAACGACCCCCGCCGGGATGATTCCGGCGGGAACCACGCCCGAGTCGGAGAAT
GGAGCTGAATTCCAGGAGCATGAAAGGATTCTATCTCCCGATTTTCTTTCAGTTGCCCAGATCA
CAGAAATGCTAGCAGAGGATGCAGACGGAGTTCAACGGAAACTGGAAAAGTTTTTGAATTTCAA
AAACCTTCACACCTGTTTAAAGGAAGCCATTCTACTGGATTATTATGTATCTGGATTTTTGTGG
GCTAGAGGAATGGACTTTTCTATTATTCAATATTCAAAATTTATGACTTTACTAGATATGTTAC
TTCATAATCTTAGAACACTGCGTATGTCCTTAGAAGACAGCATAAAATGGCTTGGAGAAGTTAT
GGCTGAAATAGGGCCATCCCATTCACAAAAAAATGAGGAGTGGAATATCTTTGATATAAAACAA
ACCAATGCTATTGTTGATTACTTAAAAGTCAGCCTATTTCAACACTACAAGCTATATGAGTTTC
TGTTCTACTCTACCAGGGAAGAAATTGTGATAGGAACTGAGCAAGTAATAGAAGTTGTAAAGCC
TGTAGGTCACCCTTTCCCTGATCCTCTAGAAGAAGGAATGGCATTTGATATTTACTCAACGTTT
ATAGAGCCTCCTCCAACATTGGATATGGAAATGAAGGAGTTGCATCAAGAACAAGGCCCTGAAG
AGTCCCATCCAGAAGCCAACACTTCAGAGACTGATCCATTAGTTGGTTTCACCATTGAAGATAT
AAAATCAGTGCTGAGTCAAGTCACAGATGATATTTTAATCGGCATCCAGACCGAGATAAACGAA
AAGCTGCAAATACAGGAAGAAGCCTTTAATGCACGAATAGAAAAATTGAAAAAGGCCTGAGGAC
TCCGAACTGGAGAGTGATACTAAACTTCACAGAAACAAATAAAACCAGCAGAAAAAACAGACCC
TCTAGAGCACCAGCTCTCCTTCATTTAGTTGGGAAAGGAAAACTAAGCCCCACTTTTTATTATC
CTAACTAATTAGAAAAGTATTGGCCCCAATTTTGCTATCTCCTGTCCCATAACAGCCTCTGAAT
TTATTGCGCTGTCTGTAATAAGAACATTTTGTATATAAGAGTTCGGAGAACTATATATAAAAAT
ACAATTACTTTTACAATACTCCTTTGACATTTTGACTAGTAAATGTTATTCATCTTCAAGGAGA
ATGAAGCCAACTTTTTTAAATAAAGAAAAATAATAATAATTTTATCCATATTGACCCAAATGAA
CTGCCACATTGCTGAAGCCTTGTGAACAGAGACCACCACCACACTGCTGAGGATAAAACTTGCT
AAACAATAGCAATTCAAATGAATATACTAGGGTTTTTGGTTTGTCTTTTTTTCTTCTTAAATCA
TTTGGTTTTCTTGTTTAAATGTTTCAGTGTGAAACCAATTTTCTGAAATTATATAATGCAGTTT
GAAGCACTTTAATTTATTCTGTACTGTATTTGTTATTTCTAATCTTGTTACTCTCCCAGGAGAA
TACATGACCTATATAAAAAGAAGCAATGTATAAATGGTTATTAAAGACCAACCTATATATAGAT
TGTAAAAATCTTAAATACAAATCAAACTTACAGAGCTCTAAAAATTAACCATTATATTGCAGTA
GGATGATTGAAAAATCTTAAGCCTTTAAATACTTTTATTAAAATATAATTTCAAAAGAAAATAT
CCATTTGCCAACTGACTGTCCCTAGTTAGACAAATTAAATTAATTACTATCTAGGCCCTTTCCA
AACTTCTGAAATTTCAGAGTACTCTAGAATGGAGAGAACTGCTAGGAGGAGACCATTCCTCCAA
GATATTTCCAGTTTATATTGGAACCAAATGTACTTGAATTGGGTGGCAGTTGGTTGAATACATT
CTGTCCATGCTCTGACCTTGGGCTATAACCTTACTTGCTCCATAAGTACCAAGAGGATTGTCCA
AAATGTATTCATCTGGGGCAGAGACAGGTCTGACAGCATTTGCTATTTTTCTAACTACACTGAT
CATTAAGTAAGAGAAGTCCTTAAGATGAAACCATGTTTATTGTTCACGCAGTTCTGAGTCTGTA
AGGCCTGGAGATGGGCAAGGATGTTTCTTCCCTGAGCTGCCCTTCCTCACTGACAGTGTAGATG
GCCACAGGAGACCATGCGAAGGGCTTACAAGTCTTGCAGTCTCTTTCCAGGGCAAACAGAGATG
AAACTAGAGAGAAATGGGAATAAATGAATAGGGAATAAAACAGCTTCAAGTGCAGTCTTTGGCA
CAGAGTGGACCTCCGTTTCTAATAAAGAGGGCTTATTTTGAGCAAGTGTACTAGAGTCTAAAAC
TGAGTAGAAAATAGCAGTAGGCTCCCTAAAACTTCACAAGAATGATATACTATAAAGTGTGCCT
AAAGCCCGCCTCAGGAGTAGGTCTTCGAGAATCTGATAGTGGCTTCACCAGTGGCTAGTATGTG
ACTTGGGACAGGCTGCTCCCCCTTTATTATACATCTCTTAAATGAGACTAATACTTAATTTTGA
GGTAGTTATAAGAATTCACGAAATTTGTATTAAAGGATTGTTTGTGGTAAGTTTTGGTTTCTAG
TTACCTCACAGGCTACCCCAAACCCACCGTCCAATCATTTGTGCAGCCTCTTTGGAGCCTTCTC
TGTCTCCCCACTGGAACTGGTGGATCAGCATGTCCTCTATCGGTAACCACTGTTGTCTAACATC
TTTTGTGCTGGAGCAGCTCAGGGATCTCGGCAGCAGCCTGACTGTAACATCAGATGCTGAAAAG
ATAGCAATCATAGTAGCAGTAACTACAAATTTTAGCCTATGTTCTCTGCTCTTTTAAATTAATT
TTGATGAAGGAAATTTCATTAAATTTATTGATGAAGGAAAATATTCACTATTACCAAAAAAATT
ATAGACCAAAATAAATTTCACCCTAGCTAGGTACCTTCATTTCTCTTCCCATGAGACAACCACA
GCTTCCAGTAAGTCCTTAGAAAACTATTTTTTACCTATTTAAATAATTGGATGCTTGTATAGGG
TGGCCTTTTTGTAAAAACGGTTTGCCTTATTCTTTACATTGCTTTTTTTCCATCAAATAATGTG
TCTTAAGTTAATTTTCTATCAGTTCTTTCTAATGACCATACAGTACTTCATTTTAATACTCCAT
AACTTTTTAACTAGATCTACTGACATTTTTCTTGTTTTCAGTACTTTGCTATCACAGTGTTGCA
CTGCGATATGGGTGAACATGTATGATTATACCTAAGGATGAATTCCTAGAGAGGGACATTTTTT
AGGTCAAATTTTATTTGAATTTCCAATTTTGGTAGATATTGTCAAAGCACCTCCCAAAGATATT
TTACCAACAGTAAAATGATAATAACTATGTATGATAATAACTCTCTACATCATTACTAACTGAT
GCATTGCCCAATTTTTTATCTTTGGTATTCTGGTAGATAAAAAATACTGTCACACTA

hide sequence

RefSeq Acc Id:

XM_021072468 ⟹ XP_020928127

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	65,157,924 - 65,277,978 (+)	NCBI

Sequence:

show sequence

TCCTGATTTTTGTAAAAATACTTCAGTATTTCTTCATTCAATATAATATTTTGGCATATAACCT
TTTTCATGTTTAGCTTTTTTTATTCATATTCTAGTGAAAGTTTTGCTGCTGAATTCTAGCAAGT
GCCTGTTTATTTTTTATTTATATAATTATACTGTTTAATCATTTAATTTGACAGAAGTATGTGA
AACCTATTAATGATCTGCATTTCTAAAATTAACCTTATTTGGTCATAATAACAGCTTATATTAT
TTTATTTATTTATTTATTTGGTCTGTAAGGGCCATACTCATGGTATATGGAGGTTCCCAGGCTA
GGGGTCTAATTGGAGCTGTTGCTGCTGGCCTATGCCAGAGCCACAGCAATGCTAGATCTAAGCC
GCATCTGTGACCTACACCACAGCTCACAGCAACGCTGGATCCTTAACCCACTGAGCAAGGCCAG
GGTTCACCCCACAACCTCAGGGTTTCTAGTTGGATTTGTTAACCATTGAGCCATGATGGGAACT
CCCACAGCTTATTATTATTTTAGTACAATGCTGGATTCAGTGTTCTGAGATACCATTTTAAGTT
GAACTTTTGCACCTGAATTCATTAATGATTTTGGCTTATAATTTCCTTTCTGTGCTAGTTCGGG
TTTCTGTGTATGGACTATGCTGGCTTCTAAAAAATGACTTATCTACAGTCTATAGCAATTTATG
TGTTCTTGATTGTTCAGTAGAACTTCAAGTGTAAAGCTATCTGGACATTATGACCTTTTAAAAA
GTAGGGTTCCAGTTTAGTTCATGTGTGGTCAGATCCATGTGCTCCCTTACTCATGGTCAAATTT
GATGACGTATATATTCCTAGGAAGTCACCCATTTCCTTGTAATTTTCAAATATATTTCCAATTA
ATATGACATTTTTTTCTTTAATCACATTTACCCAAGATTTACCCATTCTCTTCATTATTTAAAA
GAACTAGCTCCTGCTTTTACTTATCCTTCTTTCAACTACTTTTTCTGTTTTTCTTAAATTGGTT
CTTTACCATGTCCAGGAGTACAGTGGGGTGACTGAGACATTCTCCTTGGGCACAAAATTTAAGG
GATGCCAAAAAGTCAGTAGTCAAGAGAAACTATATTTTAATTCAATATTTTAAAAATCAAAATT
AATGCAAAAAAGTCCATAATGGATCAAAATTTTAAATAAAGACAGCAATAGTATTACTGATTTT
TCCTTTTTACCTCAGGCTCCAACATGTATCAGCACAGTGCTGCTTCTTAGTTCATTTGTTTTCA
GGTTTGAAGAAAGCCTTTCAAAGTGTTAGACCAGCCTGTGTTCTCTATGACTGTGAAACATCTC
TTAGACATCTTTGAATGGAGCTGAATTCCAGGAGCATGAAAGGATTCTATCTCCCGATTTTCTT
TCAGTTGCCCAGATCACAGAAATGCTAGCAGAGGATGCAGACGGAGTTCAACGGAAACTGGAAA
AGTTTTTGAATTTCAAAAACCTTCACACCTGTTTAAAGGAAGCCATTCTACTGGATTATTATGT
ATCTGGATTTTTGTGGGCTAGAGGAATGGACTTTTCTATTATTCAATATTCAAAATTTATGACT
TTACTAGATATGTTACTTCATAATCTTAGAACACTGCGTATGTCCTTAGAAGACAGCATAAAAT
GGCTTGGAGAAGTTATGGCTGAAATAGGGCCATCCCATTCACAAAAAAATGAGGAGTGGAATAT
CTTTGATATAAAACAAACCAATGCTATTGTTGATTACTTAAAAGTCAGCCTATTTCAACACTAC
AAGCTATATGAGTTTCTGTTCTACTCTACCAGGGAAGAAATTGTGATAGGAACTGAGCAAGTAA
TAGAAGTTGTAAAGCCTGTAGGTCACCCTTTCCCTGATCCTCTAGAAGAAGGAATGGCATTTGA
TATTTACTCAACGTTTATAGAGCCTCCTCCAACATTGGATATGGAAATGAAGGAGTTGCATCAA
GAACAAGGCCCTGAAGAGTCCCATCCAGAAGCCAACACTTCAGAGACTGATCCATTAGTTGGTT
TCACCATTGAAGATATAAAATCAGTGCTGAGTCAAGTCACAGATGATATTTTAATCGGCATCCA
GACCGAGATAAACGAAAAGCTGCAAATACAGGAAGAAGCCTTTAATGCACGAATAGAAAAATTG
AAAAAGGCCTGAGGACTCCGAACTGGAGAGTGATACTAAACTTCACAGAAACAAATAAAACCAG
CAGAAAAAACAGACCCTCTAGAGCACCAGCTCTCCTTCATTTAGTTGGGAAAGGAAAACTAAGC
CCCACTTTTTATTATCCTAACTAATTAGAAAAGTATTGGCCCCAATTTTGCTATCTCCTGTCCC
ATAACAGCCTCTGAATTTATTGCGCTGTCTGTAATAAGAACATTTTGTATATAAGAGTTCGGAG
AACTATATATAAAAATACAATTACTTTTACAATACTCCTTTGACATTTTGACTAGTAAATGTTA
TTCATCTTCAAGGAGAATGAAGCCAACTTTTTTAAATAAAGAAAAATAATAATAATTTTATCCA
TATTGACCCAAATGAACTGCCACATTGCTGAAGCCTTGTGAACAGAGACCACCACCACACTGCT
GAGGATAAAACTTGCTAAACAATAGCAATTCAAATGAATATACTAGGGTTTTTGGTTTGTCTTT
TTTTCTTCTTAAATCATTTGGTTTTCTTGTTTAAATGTTTCAGTGTGAAACCAATTTTCTGAAA
TTATATAATGCAGTTTGAAGCACTTTAATTTATTCTGTACTGTATTTGTTATTTCTAATCTTGT
TACTCTCCCAGGAGAATACATGACCTATATAAAAAGAAGCAATGTATAAATGGTTATTAAAGAC
CAACCTATATATAGATTGTAAAAATCTTAAATACAAATCAAACTTACAGAGCTCTAAAAATTAA
CCATTATATTGCAGTAGGATGATTGAAAAATCTTAAGCCTTTAAATACTTTTATTAAAATATAA
TTTCAAAAGAAAATATCCATTTGCCAACTGACTGTCCCTAGTTAGACAAATTAAATTAATTACT
ATCTAGGCCCTTTCCAAACTTCTGAAATTTCAGAGTACTCTAGAATGGAGAGAACTGCTAGGAG
GAGACCATTCCTCCAAGATATTTCCAGTTTATATTGGAACCAAATGTACTTGAATTGGGTGGCA
GTTGGTTGAATACATTCTGTCCATGCTCTGACCTTGGGCTATAACCTTACTTGCTCCATAAGTA
CCAAGAGGATTGTCCAAAATGTATTCATCTGGGGCAGAGACAGGTCTGACAGCATTTGCTATTT
TTCTAACTACACTGATCATTAAGTAAGAGAAGTCCTTAAGATGAAACCATGTTTATTGTTCACG
CAGTTCTGAGTCTGTAAGGCCTGGAGATGGGCAAGGATGTTTCTTCCCTGAGCTGCCCTTCCTC
ACTGACAGTGTAGATGGCCACAGGAGACCATGCGAAGGGCTTACAAGTCTTGCAGTCTCTTTCC
AGGGCAAACAGAGATGAAACTAGAGAGAAATGGGAATAAATGAATAGGGAATAAAACAGCTTCA
AGTGCAGTCTTTGGCACAGAGTGGACCTCCGTTTCTAATAAAGAGGGCTTATTTTGAGCAAGTG
TACTAGAGTCTAAAACTGAGTAGAAAATAGCAGTAGGCTCCCTAAAACTTCACAAGAATGATAT
ACTATAAAGTGTGCCTAAAGCCCGCCTCAGGAGTAGGTCTTCGAGAATCTGATAGTGGCTTCAC
CAGTGGCTAGTATGTGACTTGGGACAGGCTGCTCCCCCTTTATTATACATCTCTTAAATGAGAC
TAATACTTAATTTTGAGGTAGTTATAAGAATTCACGAAATTTGTATTAAAGGATTGTTTGTGGT
AAGTTTTGGTTTCTAGTTACCTCACAGGCTACCCCAAACCCACCGTCCAATCATTTGTGCAGCC
TCTTTGGAGCCTTCTCTGTCTCCCCACTGGAACTGGTGGATCAGCATGTCCTCTATCGGTAACC
ACTGTTGTCTAACATCTTTTGTGCTGGAGCAGCTCAGGGATCTCGGCAGCAGCCTGACTGTAAC
ATCAGATGCTGAAAAGATAGCAATCATAGTAGCAGTAACTACAAATTTTAGCCTATGTTCTCTG
CTCTTTTAAATTAATTTTGATGAAGGAAATTTCATTAAATTTATTGATGAAGGAAAATATTCAC
TATTACCAAAAAAATTATAGACCAAAATAAATTTCACCCTAGCTAGGTACCTTCATTTCTCTTC
CCATGAGACAACCACAGCTTCCAGTAAGTCCTTAGAAAACTATTTTTTACCTATTTAAATAATT
GGATGCTTGTATAGGGTGGCCTTTTTGTAAAAACGGTTTGCCTTATTCTTTACATTGCTTTTTT
TCCATCAAATAATGTGTCTTAAGTTAATTTTCTATCAGTTCTTTCTAATGACCATACAGTACTT
CATTTTAATACTCCATAACTTTTTAACTAGATCTACTGACATTTTTCTTGTTTTCAGTACTTTG
CTATCACAGTGTTGCACTGCGATATGGGTGAACATGTATGATTATACCTAAGGATGAATTCCTA
GAGAGGGACATTTTTTAGGTCAAATTTTATTTGAATTTCCAATTTTGGTAGATATTGTCAAAGC
ACCTCCCAAAGATATTTTACCAACAGTAAAATGATAATAACTATGTATGATAATAACTCTCTAC
ATCATTACTAACTGATGCATTGCCCAATTTTTTATCTTTGGTATTCTGGTAGATAAAAAATACT
GTCACACTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_001924805	(Get FASTA)	NCBI Sequence Viewer
	XP_020928127	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000051337
	ENSSSCP00000051337.1
	ENSSSCP00015029090.1
	ENSSSCP00025002811.1
	ENSSSCP00030000485.1
	ENSSSCP00035015279.1
	ENSSSCP00040023726.1
	ENSSSCP00045030705.1
	ENSSSCP00050045604.1
	ENSSSCP00055000147.1
	ENSSSCP00060013457.1
	ENSSSCP00065008258.1
	ENSSSCP00070019281.1

RefSeq Acc Id:	XP_001924805 ⟸ XM_001924770
- Peptide Label:	isoform X1
- UniProtKB:	A0A287B5F7 (UniProtKB/TrEMBL), A0A4X1TV61 (UniProtKB/TrEMBL), A0A8D1XMS7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATSVGTTPGGTTPAGMIPAGTTPESENGAEFQEHERILSPDFLSVAQITEMLAEDADGVQRKL EKFLNFKNLHTCLKEAILLDYYVSGFLWARGMDFSIIQYSKFMTLLDMLLHNLRTLRMSLEDSI KWLGEVMAEIGPSHSQKNEEWNIFDIKQTNAIVDYLKVSLFQHYKLYEFLFYSTREEIVIGTEQ VIEVVKPVGHPFPDPLEEGMAFDIYSTFIEPPPTLDMEMKELHQEQGPEESHPEANTSETDPLV GFTIEDIKSVLSQVTDDILIGIQTEINEKLQIQEEAFNARIEKLKKA hide sequence

RefSeq Acc Id:	XP_020928127 ⟸ XM_021072468
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1XMS7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLAEDADGVQRKLEKFLNFKNLHTCLKEAILLDYYVSGFLWARGMDFSIIQYSKFMTLLDMLLH NLRTLRMSLEDSIKWLGEVMAEIGPSHSQKNEEWNIFDIKQTNAIVDYLKVSLFQHYKLYEFLF YSTREEIVIGTEQVIEVVKPVGHPFPDPLEEGMAFDIYSTFIEPPPTLDMEMKELHQEQGPEES HPEANTSETDPLVGFTIEDIKSVLSQVTDDILIGIQTEINEKLQIQEEAFNARIEKLKKA hide sequence

Ensembl Acc Id:

ENSSSCP00000051337 ⟸ ENSSSCT00000037907

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000033268	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015054440	UniProtKB/TrEMBL
	ENSSSCG00025005078	UniProtKB/TrEMBL
	ENSSSCG00030000823	UniProtKB/TrEMBL
	ENSSSCG00035028940	UniProtKB/TrEMBL
	ENSSSCG00040042651	UniProtKB/TrEMBL
	ENSSSCG00045025997	UniProtKB/TrEMBL
	ENSSSCG00050075875	UniProtKB/TrEMBL
	ENSSSCG00055000116	UniProtKB/TrEMBL
	ENSSSCG00060023101	UniProtKB/TrEMBL
	ENSSSCG00065015297	UniProtKB/TrEMBL
	ENSSSCG00070011963	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000037907	ENTREZGENE
	ENSSSCT00000037907.3	UniProtKB/TrEMBL
	ENSSSCT00015072519.1	UniProtKB/TrEMBL
	ENSSSCT00025006853.1	UniProtKB/TrEMBL
	ENSSSCT00030001092.1	UniProtKB/TrEMBL
	ENSSSCT00035038291.1	UniProtKB/TrEMBL
	ENSSSCT00040057050.1	UniProtKB/TrEMBL
	ENSSSCT00045044268.1	UniProtKB/TrEMBL
	ENSSSCT00050104108.1	UniProtKB/TrEMBL
	ENSSSCT00055000201.1	UniProtKB/TrEMBL
	ENSSSCT00060031354.1	UniProtKB/TrEMBL
	ENSSSCT00065020313.1	UniProtKB/TrEMBL
	ENSSSCT00070023312.1	UniProtKB/TrEMBL
InterPro	CLAMP	UniProtKB/TrEMBL
KEGG Report	ssc:100157740	UniProtKB/TrEMBL
NCBI Gene	CABCOCO1	ENTREZGENE
PANTHER	CILIARY-ASSOCIATED CALCIUM-BINDING COILED-COIL PROTEIN 1	UniProtKB/TrEMBL
	PTHR28457	UniProtKB/TrEMBL
Pfam	CLAMP	UniProtKB/TrEMBL
UniProt	A0A287B5F7	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1TV61	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1XMS7	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:86107	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD