UBE2F (ubiquitin conjugating enzyme E2 F (putative)) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: UBE2F (ubiquitin conjugating enzyme E2 F (putative)) Chlorocebus sabaeus
Analyze
Symbol: UBE2F
Name: ubiquitin conjugating enzyme E2 F (putative)
RGD ID: 18452777
Description: ENCODES a protein that exhibits NEDD8 conjugating enzyme activity (ortholog); NEDD8 transferase activity (ortholog); INVOLVED IN protein neddylation (ortholog); ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NEDD8-conjugating enzyme UBE2F
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110123,984,075 - 124,063,747 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604075,352,398 - 75,426,824 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
UBE2F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110123,984,075 - 124,063,747 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604075,352,398 - 75,426,824 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
UBE2F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,967,014 - 238,042,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2237,966,827 - 238,042,782 (+)EnsemblGRCh38hg38GRCh38
GRCh372238,875,656 - 238,951,423 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,540,439 - 238,615,423 (+)NCBINCBI36Build 36hg18NCBI36
Celera2232,588,691 - 232,663,675 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2230,667,560 - 230,743,407 (+)NCBIHuRef
CHM1_12238,881,335 - 238,957,233 (+)NCBICHM1_1
T2T-CHM13v2.02238,457,016 - 238,532,785 (+)NCBIT2T-CHM13v2.0
Ube2f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,177,412 - 91,214,243 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl191,178,026 - 91,218,059 (+)EnsemblGRCm39 Ensembl
GRCm38191,249,690 - 91,286,521 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,250,304 - 91,290,337 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,146,896 - 93,182,602 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,080,972 - 93,116,330 (+)NCBIMGSCv36mm8
Celera194,187,788 - 94,223,112 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.08NCBI
Ube2f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,293,506 - 99,328,690 (+)NCBIGRCr8
mRatBN7.2991,845,975 - 91,881,145 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl991,845,987 - 91,880,594 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9100,272,736 - 100,307,910 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,408,500 - 105,443,674 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09103,772,186 - 103,807,364 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,394,112 - 98,428,684 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,398,128 - 98,428,128 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0998,070,661 - 98,105,959 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,480,334 - 90,515,912 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1990,685,102 - 90,720,680 (+)NCBI
Celera989,387,935 - 89,422,442 (+)NCBICelera
Cytogenetic Map9q36NCBI
Ube2f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555422,480,455 - 2,515,986 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555422,480,455 - 2,515,982 (-)NCBIChiLan1.0ChiLan1.0
UBE2F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213140,598,262 - 140,673,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B140,613,242 - 140,688,205 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B125,198,590 - 125,274,112 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B244,050,520 - 244,125,333 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B244,050,518 - 244,125,333 (+)Ensemblpanpan1.1panPan2
UBE2F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12548,503,866 - 48,558,950 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2548,503,833 - 48,558,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2548,999,886 - 49,055,746 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02548,889,166 - 48,945,023 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2548,889,191 - 48,944,533 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12548,764,541 - 48,820,382 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02548,553,112 - 48,610,715 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02548,785,596 - 48,841,485 (+)NCBIUU_Cfam_GSD_1.0
Ube2f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303190,466,839 - 190,522,663 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936525418,554 - 472,850 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115137,567,250 - 137,620,586 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215151,976,738 - 152,030,117 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ube2f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248473,213,196 - 3,253,407 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248473,213,455 - 3,253,049 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_007966817   ⟹   XP_007965008
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.110123,984,116 - 124,063,649 (+)NCBI
Vero_WHO_p1.0NW_02366604075,352,398 - 75,426,824 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007966818   ⟹   XP_007965009
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.110123,984,115 - 124,063,649 (+)NCBI
Vero_WHO_p1.0NW_02366604075,352,398 - 75,426,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007966820   ⟹   XP_007965011
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.110123,984,115 - 124,063,649 (+)NCBI
Vero_WHO_p1.0NW_02366604075,352,398 - 75,426,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007966821   ⟹   XP_007965012
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.110123,984,075 - 124,063,747 (+)NCBI
Vero_WHO_p1.0NW_02366604075,352,398 - 75,426,824 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007966822   ⟹   XP_007965013
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.110123,984,075 - 124,063,747 (+)NCBI
Vero_WHO_p1.0NW_02366604075,352,398 - 75,426,820 (-)NCBI
Sequence:
RefSeq Acc Id: XP_007965012   ⟸   XM_007966821
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007965013   ⟸   XM_007966822
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007965011   ⟸   XM_007966820
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007965009   ⟸   XM_007966818
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007965008   ⟸   XM_007966817
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene UBE2F ENTREZGENE