Ube2f (ubiquitin-conjugating enzyme E2F (putative)) - Rat Genome Database

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Gene: Ube2f (ubiquitin-conjugating enzyme E2F (putative)) Rattus norvegicus
Analyze
Symbol: Ube2f
Name: ubiquitin-conjugating enzyme E2F (putative)
RGD ID: 1307608
Description: Predicted to enable NEDD8 conjugating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in nucleus. Orthologous to human UBE2F (ubiquitin conjugating enzyme E2 F (putative)); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363284; MGC105540; NEDD8 carrier protein UBE2F; NEDD8 protein ligase UBE2F; NEDD8-conjugating enzyme UBE2F; RGD1307608; RING-type E3 NEDD8 transferase UBE2F; similar to RIKEN cDNA 2510010F15; ubiquitin-conjugating enzyme E2 F
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2991,845,954 - 91,881,145 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl991,845,987 - 91,880,594 (+)Ensembl
Rnor_6.0998,394,112 - 98,428,684 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,398,128 - 98,428,128 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0998,070,661 - 98,105,959 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,480,334 - 90,515,912 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1990,685,102 - 90,720,680 (+)NCBI
Celera989,387,935 - 89,422,442 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
protein neddylation  (IBA,IEA,ISO,ISS)

Cellular Component
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19250909  


Genomics

Comparative Map Data
Ube2f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2991,845,954 - 91,881,145 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl991,845,987 - 91,880,594 (+)Ensembl
Rnor_6.0998,394,112 - 98,428,684 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,398,128 - 98,428,128 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0998,070,661 - 98,105,959 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,480,334 - 90,515,912 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1990,685,102 - 90,720,680 (+)NCBI
Celera989,387,935 - 89,422,442 (+)NCBICelera
Cytogenetic Map9q36NCBI
UBE2F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382237,967,014 - 238,042,782 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2237,966,827 - 238,042,782 (+)EnsemblGRCh38hg38GRCh38
GRCh372238,875,656 - 238,951,423 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,540,439 - 238,615,423 (+)NCBINCBI36hg18NCBI36
Celera2232,588,691 - 232,663,675 (+)NCBI
Cytogenetic Map2q37.3NCBI
HuRef2230,667,560 - 230,743,407 (+)NCBIHuRef
CHM1_12238,881,335 - 238,957,233 (+)NCBICHM1_1
T2T-CHM13v2.02238,457,016 - 238,532,785 (+)NCBI
Ube2f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,177,412 - 91,214,243 (+)NCBIGRCm39mm39
GRCm39 Ensembl191,178,026 - 91,218,059 (+)Ensembl
GRCm38191,249,690 - 91,286,521 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,250,304 - 91,290,337 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,146,896 - 93,182,602 (+)NCBIGRCm37mm9NCBIm37
MGSCv36193,080,972 - 93,116,330 (+)NCBImm8
Celera194,187,788 - 94,223,112 (+)NCBICelera
Cytogenetic Map1DNCBI
Ube2f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555422,480,455 - 2,515,986 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555422,480,455 - 2,515,982 (-)NCBIChiLan1.0ChiLan1.0
UBE2F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B244,050,520 - 244,125,333 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B244,050,518 - 244,125,333 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B125,198,590 - 125,274,112 (+)NCBIMhudiblu_PPA_v0panPan3
UBE2F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12548,503,866 - 48,558,950 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2548,503,833 - 48,558,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2548,999,886 - 49,055,746 (+)NCBI
ROS_Cfam_1.02548,889,166 - 48,945,023 (+)NCBI
ROS_Cfam_1.0 Ensembl2548,889,191 - 48,944,533 (+)Ensembl
UMICH_Zoey_3.12548,764,541 - 48,820,382 (+)NCBI
UNSW_CanFamBas_1.02548,553,112 - 48,610,715 (+)NCBI
UU_Cfam_GSD_1.02548,785,596 - 48,841,485 (+)NCBI
Ube2f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303190,466,839 - 190,522,663 (+)NCBI
SpeTri2.0NW_004936525418,554 - 472,850 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115137,567,250 - 137,620,586 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215151,976,738 - 152,030,117 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110123,984,075 - 124,063,747 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604075,352,398 - 75,426,824 (-)NCBIVero_WHO_p1.0
Ube2f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248473,213,196 - 3,253,407 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248473,213,455 - 3,253,049 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AA955633  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2991,880,131 - 91,880,356 (+)MAPPERmRatBN7.2
Rnor_6.0998,428,262 - 98,428,486NCBIRnor6.0
Rnor_5.0998,104,941 - 98,105,165UniSTSRnor5.0
RGSC_v3.4990,515,490 - 90,515,714UniSTSRGSC3.4
Celera989,422,020 - 89,422,244UniSTS
RH 3.4 Map9784.99UniSTS
Cytogenetic Map9q36UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)98636963192058970Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:433
Count of miRNA genes:202
Interacting mature miRNAs:227
Transcripts:ENSRNOT00000027050, ENSRNOT00000042082
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001008381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC115196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000027050   ⟹   ENSRNOP00000027050
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,846,009 - 91,880,423 (+)Ensembl
Rnor_6.0 Ensembl998,398,128 - 98,428,128 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000042082   ⟹   ENSRNOP00000040354
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,846,038 - 91,880,551 (+)Ensembl
Rnor_6.0 Ensembl998,398,128 - 98,428,128 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100973   ⟹   ENSRNOP00000080917
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,846,034 - 91,878,442 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116409   ⟹   ENSRNOP00000094106
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl991,845,987 - 91,880,594 (+)Ensembl
RefSeq Acc Id: NM_001008381   ⟹   NP_001008382
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,846,038 - 91,880,554 (+)NCBI
Rnor_6.0998,394,168 - 98,428,684 (+)NCBI
Rnor_5.0998,070,661 - 98,105,959 (+)NCBI
RGSC_v3.4990,480,334 - 90,515,912 (+)RGD
Celera989,387,935 - 89,422,442 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245422   ⟹   XP_006245484
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,845,954 - 91,881,145 (+)NCBI
Rnor_6.0998,394,117 - 98,428,684 (+)NCBI
Rnor_5.0998,070,661 - 98,105,959 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245423   ⟹   XP_006245485
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,846,364 - 91,880,554 (+)NCBI
Rnor_6.0998,394,303 - 98,428,684 (+)NCBI
Rnor_5.0998,070,661 - 98,105,959 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245425   ⟹   XP_006245487
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,845,954 - 91,880,570 (+)NCBI
Rnor_6.0998,394,119 - 98,428,684 (+)NCBI
Rnor_5.0998,070,661 - 98,105,959 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245427   ⟹   XP_006245489
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,845,957 - 91,880,554 (+)NCBI
Rnor_6.0998,394,112 - 98,428,684 (+)NCBI
Rnor_5.0998,070,661 - 98,105,959 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767274   ⟹   XP_008765496
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,845,954 - 91,880,570 (+)NCBI
Rnor_6.0998,394,115 - 98,428,684 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596539   ⟹   XP_017452028
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,846,331 - 91,880,554 (+)NCBI
Rnor_6.0998,394,303 - 98,428,684 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083920   ⟹   XP_038939848
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,846,365 - 91,880,554 (+)NCBI
RefSeq Acc Id: XM_039083921   ⟹   XP_038939849
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,845,954 - 91,880,554 (+)NCBI
RefSeq Acc Id: XM_039083922   ⟹   XP_038939850
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,845,954 - 91,880,554 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001008382   ⟸   NM_001008381
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245489   ⟸   XM_006245427
- Peptide Label: isoform X1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245484   ⟸   XM_006245422
- Peptide Label: isoform X1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245487   ⟸   XM_006245425
- Peptide Label: isoform X1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245485   ⟸   XM_006245423
- Peptide Label: isoform X1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_008765496   ⟸   XM_008767274
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017452028   ⟸   XM_017596539
- Peptide Label: isoform X1
- UniProtKB: Q5U203 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000040354   ⟸   ENSRNOT00000042082
RefSeq Acc Id: ENSRNOP00000027050   ⟸   ENSRNOT00000027050
RefSeq Acc Id: XP_038939849   ⟸   XM_039083921
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939850   ⟸   XM_039083922
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038939848   ⟸   XM_039083920
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000094106   ⟸   ENSRNOT00000116409
RefSeq Acc Id: ENSRNOP00000080917   ⟸   ENSRNOT00000100973
Protein Domains
UBC core

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U203-F1-model_v2 AlphaFold Q5U203 1-185 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307608 AgrOrtholog
BioCyc Gene G2FUF-26724 BioCyc
Ensembl Genes ENSRNOG00000019953 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000027050 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000040354 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000080917 ENTREZGENE
  ENSRNOP00000080917.1 UniProtKB/TrEMBL
  ENSRNOP00000094106 ENTREZGENE
  ENSRNOP00000094106.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027050 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000042082 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000100973 ENTREZGENE
  ENSRNOT00000100973.1 UniProtKB/TrEMBL
  ENSRNOT00000116409 ENTREZGENE
  ENSRNOT00000116409.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7303709 IMAGE-MGC_LOAD
InterPro UBQ-conjugat_E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ-conjugating_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:363284 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105540 IMAGE-MGC_LOAD
NCBI Gene 363284 ENTREZGENE
Pfam UQ_con UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ube2f PhenoGen
PROSITE UBC_1 UniProtKB/TrEMBL
  UBC_2 UniProtKB/TrEMBL
  UBIQUITIN_CONJUGAT_1 UniProtKB/Swiss-Prot
  UBIQUITIN_CONJUGAT_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54495 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZRT1_RAT UniProtKB/TrEMBL
  A0A8I6ALE6_RAT UniProtKB/TrEMBL
  Q5U203 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Ube2f  ubiquitin-conjugating enzyme E2F (putative)  RGD1307608  similar to RIKEN cDNA 2510010F15  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1307608  similar to RIKEN cDNA 2510010F15  RGD1307608_predicted  similar to RIKEN cDNA 2510010F15 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307608_predicted  similar to RIKEN cDNA 2510010F15 (predicted)  LOC363284_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC363284_predicted  similar to RIKEN cDNA 2510010F15 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL