Gene: MAB21L4 (mab-21 like 4) Chlorocebus sabaeus |
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Analyze |
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Symbol: |
MAB21L4 |
Name: |
mab-21 like 4 |
RGD ID: |
18437626 |
Description: |
ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
C10H2orf54; uncharacterized protein C2orf54 homolog |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
Species |
Gene symbol and name |
Data Source |
Assertion derived from |
less info ...
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Orthologs 1 |
Homo sapiens (human): |
MAB21L4 (mab-21 like 4) |
NCBI |
Ortholog |
Mus musculus (house mouse): |
Mab21l4 (mab-21-like 4) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Rattus norvegicus (Norway rat): |
Mab21l4 (mab-21 like 4) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Chinchilla lanigera (long-tailed chinchilla): |
Mab21l4 (mab-21 like 4) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Pan paniscus (bonobo/pygmy chimpanzee): |
MAB21L4 (mab-21 like 4) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Canis lupus familiaris (dog): |
MAB21L4 (mab-21 like 4) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Ictidomys tridecemlineatus (thirteen-lined ground squirrel): |
Mab21l4 (mab-21 like 4) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Sus scrofa (pig): |
MAB21L4 (mab-21 like 4) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
Heterocephalus glaber (naked mole-rat): |
Mab21l4 (mab-21 like 4) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
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Latest Assembly: |
ChlSab1.1 - Green Monkey 1.1 Assembly |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 10 | 126,952,353 - 126,964,319 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 10 | 126,949,416 - 126,962,277 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666040 | 72,426,311 - 72,435,657 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
MAB21L4 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 10 | 126,952,353 - 126,964,319 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 10 | 126,949,416 - 126,962,277 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666040 | 72,426,311 - 72,435,657 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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MAB21L4 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 2 | 240,886,048 - 240,896,839 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 2 | 240,886,048 - 240,896,889 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 2 | 241,825,465 - 241,835,573 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 2 | 241,474,138 - 241,484,246 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 2 | 235,498,112 - 235,508,356 (-) | NCBI | | Celera | | | Cytogenetic Map | 2 | q37.3 | NCBI | | | | | HuRef | 2 | 233,586,038 - 233,596,152 (-) | NCBI | | HuRef | | | CHM1_1 | 2 | 241,831,514 - 241,841,622 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 2 | 241,385,221 - 241,396,155 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Mab21l4 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 93,079,076 - 93,088,679 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 93,079,071 - 93,088,670 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 93,151,354 - 93,160,956 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 93,151,349 - 93,160,948 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 95,047,932 - 95,057,525 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 94,981,762 - 94,991,354 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 96,096,009 - 96,105,603 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | D | NCBI | | | | | cM Map | 1 | 47.03 | NCBI | | | | |
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Mab21l4 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 9 | 101,138,408 - 101,148,516 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 9 | 93,690,455 - 93,701,267 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 9 | 93,690,999 - 93,700,506 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 9 | 102,126,555 - 102,136,062 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 9 | 107,262,484 - 107,271,990 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 9 | 105,618,634 - 105,628,140 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 9 | 100,296,780 - 100,307,415 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 9 | 100,296,781 - 100,306,829 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 9 | 99,954,885 - 99,965,505 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 9 | 92,427,931 - 92,437,438 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 9 | 91,226,354 - 91,235,861 (-) | NCBI | | Celera | | | Cytogenetic Map | 9 | q36 | NCBI | | | | |
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Mab21l4 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955542 | 701,633 - 709,315 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955542 | 699,717 - 708,760 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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MAB21L4 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 13 | 143,574,547 - 143,584,700 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 2B | 143,589,512 - 143,599,665 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 2B | 128,144,248 - 128,154,670 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 2B | 246,946,812 - 246,956,949 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 2B | 246,946,812 - 246,956,949 (-) | Ensembl | panpan1.1 | | panPan2 | |
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MAB21L4 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 25 | 50,731,528 - 50,738,661 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 25 | 51,195,414 - 51,230,786 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 25 | 51,177,278 - 51,212,387 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 25 | 51,177,283 - 51,183,962 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 25 | 51,018,276 - 51,025,673 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 25 | 50,764,682 - 50,799,949 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 25 | 51,040,504 - 51,075,966 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Mab21l4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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MAB21L4 (Sus scrofa - pig) |
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Mab21l4 (Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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endocrine system |
hemolymphoid system |
nervous system |
High |
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Medium |
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Low |
14
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17
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33
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Below cutoff |
22
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3
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27
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Sequence
RefSeq Acc Id: |
ENSCSAT00000003962 ⟹ ENSCSAP00000002229 |
Type: |
CODING |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source |
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ChlSab1.1 Ensembl | 10 | 126,949,416 - 126,962,277 (-) | Ensembl |
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RefSeq Acc Id: |
XM_007966943 ⟹ XP_007965134 |
Type: |
CODING |
Position: |
Green Monkey Assembly | Chr | Position (strand) | Source |
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ChlSab1.1 | 10 | 126,952,353 - 126,964,319 (-) | NCBI | Vero_WHO_p1.0 | NW_023666040 | 72,426,311 - 72,435,657 (+) | NCBI |
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Sequence: |
AGCTTGGCCATGCAACACCGTGCTCTTGGACGTCTGCCTCCAGAGCTGTGAGAATTCACTTCTG TCGTTTTACCTCCGCTGTGGCCTGTCACAGCCCAGGGAAGCATGCCCGCTGTGGGCTGCAGCTG TGTGGAGCCTCCACAGCTCAGGGTGTGCCCCTGGTGCTTCCCTCGCTTCAGCCCCGGGACTCTG TTCAGGCCGGAATGTGTCCTTCCCACCCCACCTTTCCCAGCACATCTGGGAGTTCCTGAAATAC AGGATCCACGCTGTGGCCTGAGCTCTGCTGGGAGACTCAATCAACACCCATCTGAGCATTTGCA GTTGCCACGGGTGCCAAGGAACCCCTTCTTGAGTTGCCAAGGCCCCATGGCACGTCTGGTCTCT CTGACCCTCCCCACCCTCACCGTGCTGCCCTCCTGGGGTCAGAGTTGGAGTCCTGGGTGCCCTG TGGCTAGTGGTTGCCTGCAGGCCTCTGGAGCACTTGGTCCTTTGTGGTCAAAGCTGCCCAGCCG TCCAGGGCAGACGCCCGCATCGCCTCTGTCAGCAGCGGCTCTCCTCTCTCTCGCACGGGTACAG CTTCCCAGGGACCACTGCTTGCCCACAGTTCCCCGGTGTGGTCCACTGCTCCTGTGTGCCAGGC ATCGTGCACGGCTCTAGGGTACACCGAGGAGTGTGACACCATTCCAGCCACAGGAAACTCACCA TGTCATTCGCCACCCGCCAGAGGGGCCAAGGGGCAAGGATGGGGCCTGGCCCATCAGAGGCTCT GACCTCAGCTGGGGCACAGGTGGAGAGAGCGGGGTCCCTTGGGGCAACCAGCTGGGTTCAGCTC AGGAACTGGTGGGAGCCAGGAGGCCAGAGCCAGTGAAGGACAGGACAGGGTGTCAGCTGGGACT GACAAGGGGGACAGCTGGGTGGAATCCCCTGCCGAGGAGAGGGGAGGGGAAGGGAGGGGAAGGG AGGGGGGCCTGGTCTTGGGCCCTTGGTGTTGACAGCAGTGGAGAGAGGGCTTCAGGGGCAAAGG AGGATGCAAAGCCTGGGGGCTGTCCCCGAGGGAGAAGGGCCCTGCTCTGTGGCCACTGGAGGGA GCAGCTTGGGGGCTGAGGAGCCAGCCTTTCCCATGGCTCAGAGCCTCTGGGCACTTTGAGTAGA TTGGGGTGGGGTCGGGGGTCTCCTGGGTGAATTCAGAACACTGGGATGTTCCTGGGAAGGAGGA GCTGGATCACTGAAGGTGTCATCGGCCACCTCCCCGCAGGCCAGAGTCCTGTGGAGACGGAGGA CTATGGCACATGGCTGTGTGTGGGGACCTAGGCAGGCCGTGGGTGAGGGCCTAGGACAAATGGG CCCTTGAACCTGAACAGCTGCCCTGAGGAGGGGGACACGTGCTCTAACCAACTCCAGCAAACAG GAGTGGGCCAGCGTGGAGGAGGGATATCTGTCTCTTGCTACCCCGTGGGCTACCCTGTGAGGGG GTGAGCTCCCTGTCCTGGGAGGCATGGAAGCAAAGACCCACTCACTGGGCTGCAGCCCCTCACA GGGGCTTTCAAGCACCAGGAAGTGAGTGGCTGTTGCCCCTGCCCCACCCCCCTGGGGTCCTGGT TCTGCCCACAGCTCTGACTTAGGTGCAGCTGCCTGGGAGGGTGAGAGGCCCATATGCGGTGGCC ACAGGGGTGGCATCTCCACGACGCTGAGTGGGGCCGTCTCCATGTTCGCTGTTTGCAGACACCC CTGCGGCTGAGCACCCAGCGCACCCGGCCAGCGGGCAGGGCCAAGGGTTGGTGGGGCGGCTCCC TGCTGGTTGGGACTTGCACGGCCCTGCGCAGGGAGGGGGCGGGGAGGGCAGGGTGCCTGGCGCA GGTGCTGGAGGGGGATGGTAGGGCGAAGTTCTCCACCTGGGTGAGGTGGAGCCACGGAGACTGC TTCTCTCCAGAACCAGACGAGCTCCAGTTCCCAGGCTAGGTGGGTGCCAGCTCCTCTCAGGCTG GAGGCTGGGCAGGGTGGGGTGGGGTGGGGACTGGTAGCCCAGGGGTCCGGGACCCAGATGGCTG GACGCACAGCTGGGGCAGAGGCAGGAGCCACGCCAGGGCTGTGGCCCGTGCACGTTTGAGGCGT CTTCCTTTAAGCTGGGCACAGGTGTCTGAGGGGAACATTGTGGAGACGCAGCCTCCAGGTTCCC CGCCTTCCAGGCAGCCTTAGAGAGTCCGGGGCTCCCCCACAGCGGGGTCTGGGCAGCCACCGCC CTGCCTCCCCTTTCTCACTGAGCCATGGGGCGCCTTGTGTTCCCTCCAACCTGGCAGGGAGGCT GGGGCAGGGGGGCCTGATCCAGAGACCTGGCCCCTGGGCTGTGGGCAGGAGGGTGGAAGGAGGC CCATCAGGAATACACACAGCCTCCCCTCCCAGGGACGGCGCAGTCCAGCGGCAGGATTTCTCCA GGGACCCCAAGCCTGGCTGGGACAGGGGCCTGGGCCTAAGATGCGAGAGCTCTTCTGATGGGAG GGAGGAGGGTAACCAAGCCCAGCCTCCGCCTGCCCTGCACGGCCCGTGACATTCCCGATTGCTG GGGACTGACTCACCCCCACTTCAAAGGCCTTAAATAGTTCAGCTATTTAACTTGCTGCACTGTG CTGTCACTCTGGAATTCTGCTCTGCGGGAGCTGAGGCCCCACCTGTAGACCTGCTGCTTACCTG GGCAGGTGCCTCCTCCCAGCCCATCTGCACAGCCGGCCTGCGGAGCCCTCCTCAGGGGCCATTG GCCCTCACCTGCCACCGTTGAAGGGATGCCTGCCCCTGCTGTCCCCACCTCAGCCATGGCTGTG CAGGTGCCCCTGTGGCACCACTACCTGCAGGCCATCCGGTCGCGGGAGGCGCAGCGTGCCCAGG ACTTCCAGCGCTCAGAGAACGTGCTGCTCACGGTGCTGGAGCGAGTGCACGCCCTGGACCCCCG CTTCATCGTGGACTACTCCCGTGGCCTGGAGGCCTTCCAGTTCGCCCTGCGCTCCTCTGAGGAC CCGCTGGACATGGAGGTGCCCCTGTGGGTGGATGCCGAGGCTCTACTGATTGAGGAGCCAGAGG CCACCCAGCCGGAGGATGGCCCTGAATTATGCCGACTGGGTGTGCCCAGGGAAGGGGCTGGCCT GGAGTGGTGGACCACCGACGATATCTTCACCGCCTCCTCGGAGGGTGATGCCAAGTGCTGTGGA CACATTGTGCCCAGCAAGATCCTGTGTGTCCTCAAAGACTTGCTGGTGGCAGCCATCGTACACT GCAAGCACCACAGTCTCATCAGGCCAGGTTCACTGAACGCAGCCAGCCTGAGGGAGGAGCAGCT CTACCTGTCCTTGCTGGTGTCCAGCGGCTGGAGAACAATCAACTTCCACGTGGTGCCCGTGGTG AGAAGGAAGCTTGGGGTGCCTGCCCTGGAGGGGGCCCAGCAGATGCCTGGGTTCCCTGAGGGCA GCTTGAGAAGGATCCTCAGCCAAGGGGTGGACCTGGTGCCGGCCAGCACCCAGCTCTGGAGGAC CTCCACTGACTACCTGCTCACCAGGCTGCTGGGGGAGCTGGGTTCCCTGCAGGGCCATCGCCTG GACAGCCTCTCCATCCTTGACCGGGTCAACCACGAGAGCTGGCGAGATGGTGGCCGGACTGATG GCCTGACCTTTGGCCACCTGAAGACGGTGCTGCTGTGGGCCTCCGTGCTCTTCCCAGCGCCCGA GGACTGGGCAGAGCTGCAGGGCGCCGTGTACCGCCTGCTGGTGGTGCTGCTCTGTTGCCTGGCC ACGCGGAAGCTGCCCCACTTCCTCCACCCTCAGCGCAACCTGCTGCAGGGCAGCGGCCTGGACC TCGGCGCCATCTACGAGCGTGTGGAGGGCTTCGCCAGCCAGCCCGAGGCGGCCCTGCGCATCCA CGCCACCCACCTGGGCCGCAGCCCCCCGCCGCGCATCGGCTCCGGGCTCAAGGCGCTCCTGCAG CTGCCGGCCAGTGACCCCACTTACTGGGCCACTGCCTACTTCGACGTCCTGCTGGACAAGTTCC AGGTCCTCAACATCCAGGATAAGGACCGGATCTCCGCCATGCAGAGCATCTTCCAGAAGACCAG GACTCTGGGCGGCGAGGAGAGCTGAGCTGGGCCACCTGGTCTTGGCCACCTGTTCTCGGCTGCC TGACAGACTCTGCACTGCACCATGGGAGGCTCCTGGAACATTTGGAAGAAGGAATGGGCTTCTC ATTGAGGGGGACAGTGGAGGGATTTTGTCCCTAGGAGCGGCCTCTGAGAGTCTTTCAGTGCCTG GTGGGGCAGGGCAGGCCTCTTGGAGCACCTCCTCCCTGGGTCAGGTCCTGGATGCAGGTGCCAA ACCCCACGTAGTGCATGTTGACCCAGTCACGTGGTGTTGTTAAGCAAACAGCCTCGGCAGGAGA CCTGGAGCTGAGGGCTTGGCCCTGCCTGCACTGTGTGCCATTCCTTGGAGAAGAAATGCTGTGT ATTTGGTCTTGAAAAAATGAATGTGCTGGGTATACACAGCAGAAAGGGGA
hide sequence
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RefSeq Acc Id: |
XP_007965134 ⟸ XM_007966943 |
- UniProtKB: |
A0A0D9R0U0 (UniProtKB/TrEMBL) |
RefSeq Acc Id: |
ENSCSAP00000002229 ⟸ ENSCSAT00000003962 |
Additional Information
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