MAB21L4 (mab-21 like 4) - Rat Genome Database

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Gene: MAB21L4 (mab-21 like 4) Canis lupus familiaris
Analyze
Symbol: MAB21L4
Name: mab-21 like 4
RGD ID: 12184897
Description: ASSOCIATED WITH Bethlem Myopathy 1A (ortholog); chromosome 2q37 deletion syndrome (ortholog); D-2-hydroxyglutaric aciduria 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C25H2orf54; chromosome 25 open reading frame, human C2orf54; LOC100855821; LOC609000; uncharacterized protein C2orf54; uncharacterized protein C2orf54 homolog; uncharacterized protein C2orf54-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12550,731,528 - 50,738,661 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2551,195,414 - 51,230,786 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02551,177,278 - 51,212,387 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2551,177,283 - 51,183,962 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12551,018,276 - 51,025,673 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02550,764,682 - 50,799,949 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02551,040,504 - 51,075,966 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
MAB21L4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12550,731,528 - 50,738,661 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2551,195,414 - 51,230,786 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02551,177,278 - 51,212,387 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2551,177,283 - 51,183,962 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12551,018,276 - 51,025,673 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02550,764,682 - 50,799,949 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02551,040,504 - 51,075,966 (-)NCBIUU_Cfam_GSD_1.0
MAB21L4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382240,886,048 - 240,896,839 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2240,886,048 - 240,896,889 (-)EnsemblGRCh38hg38GRCh38
GRCh372241,825,465 - 241,835,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362241,474,138 - 241,484,246 (-)NCBINCBI36Build 36hg18NCBI36
Celera2235,498,112 - 235,508,356 (-)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2233,586,038 - 233,596,152 (-)NCBIHuRef
CHM1_12241,831,514 - 241,841,622 (-)NCBICHM1_1
T2T-CHM13v2.02241,385,221 - 241,396,155 (-)NCBIT2T-CHM13v2.0
Mab21l4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,079,076 - 93,088,679 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,079,071 - 93,088,670 (-)EnsemblGRCm39 Ensembl
GRCm38193,151,354 - 93,160,956 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,151,349 - 93,160,948 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,047,932 - 95,057,525 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,981,762 - 94,991,354 (-)NCBIMGSCv36mm8
Celera196,096,009 - 96,105,603 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.03NCBI
Mab21l4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89101,138,408 - 101,148,516 (-)NCBIGRCr8
mRatBN7.2993,690,455 - 93,701,267 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,690,999 - 93,700,506 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9102,126,555 - 102,136,062 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09107,262,484 - 107,271,990 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,618,634 - 105,628,140 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09100,296,780 - 100,307,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,296,781 - 100,306,829 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0999,954,885 - 99,965,505 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4992,427,931 - 92,437,438 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera991,226,354 - 91,235,861 (-)NCBICelera
Cytogenetic Map9q36NCBI
Mab21l4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955542701,633 - 709,315 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955542699,717 - 708,760 (+)NCBIChiLan1.0ChiLan1.0
MAB21L4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213143,574,547 - 143,584,700 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B143,589,512 - 143,599,665 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B128,144,248 - 128,154,670 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B246,946,812 - 246,956,949 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B246,946,812 - 246,956,949 (-)Ensemblpanpan1.1panPan2
Mab21l4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303192,366,644 - 192,374,541 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936745844,883 - 852,803 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936745845,240 - 852,776 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAB21L4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.115139,734,539 - 139,745,131 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215157,631,214 - 157,649,070 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAB21L4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110126,952,353 - 126,964,319 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10126,949,416 - 126,962,277 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604072,426,311 - 72,435,657 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mab21l4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248475,078,945 - 5,087,436 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248475,079,755 - 5,087,593 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MAB21L4
206 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
2 5 1 17 19 16 6 1 6 6 15 4 9 14 10

Sequence


Ensembl Acc Id: ENSCAFT00845036724   ⟹   ENSCAFP00845028751
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2551,177,283 - 51,183,962 (-)Ensembl
RefSeq Acc Id: XM_038436001   ⟹   XP_038291929
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02551,177,278 - 51,184,594 (-)NCBI
RefSeq Acc Id: XM_038436002   ⟹   XP_038291930
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02551,177,278 - 51,212,387 (-)NCBI
RefSeq Acc Id: XM_038458793   ⟹   XP_038314721
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2551,195,414 - 51,230,786 (-)NCBI
RefSeq Acc Id: XM_038510920   ⟹   XP_038366848
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12551,018,276 - 51,025,673 (-)NCBI
RefSeq Acc Id: XM_038574424   ⟹   XP_038430352
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02551,040,504 - 51,047,824 (-)NCBI
RefSeq Acc Id: XM_038574425   ⟹   XP_038430353
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02551,040,504 - 51,075,966 (-)NCBI
RefSeq Acc Id: XM_038638649   ⟹   XP_038494577
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02550,764,682 - 50,771,999 (-)NCBI
RefSeq Acc Id: XM_038638650   ⟹   XP_038494578
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02550,764,682 - 50,799,949 (-)NCBI
RefSeq Acc Id: XM_846178   ⟹   XP_851271
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12550,731,528 - 50,738,661 (-)NCBI
Dog10K_Boxer_Tasha2551,195,414 - 51,202,711 (-)NCBI
Sequence:
RefSeq Acc Id: XP_851271   ⟸   XM_846178
- Peptide Label: isoform X1
- UniProtKB: A0A8P0NQ94 (UniProtKB/TrEMBL),   A0A8C0Z5F8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038366848   ⟸   XM_038510920
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038494578   ⟸   XM_038638650
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038494577   ⟸   XM_038638649
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038291930   ⟸   XM_038436002
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038291929   ⟸   XM_038436001
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Z5F8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314721   ⟸   XM_038458793
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038430353   ⟸   XM_038574425
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038430352   ⟸   XM_038574424
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Z5F8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845028751   ⟸   ENSCAFT00845036724
Protein Domains
Mab-21-like HhH/H2TH-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000030158 UniProtKB/TrEMBL
  ENSCAFG00040023572 UniProtKB/TrEMBL
  ENSCAFG00845020820 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000045483.3 UniProtKB/TrEMBL
  ENSCAFT00000096754.1 UniProtKB/TrEMBL
  ENSCAFT00040043873.1 UniProtKB/TrEMBL
  ENSCAFT00845036724 ENTREZGENE
  ENSCAFT00845036724.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1410.40 UniProtKB/TrEMBL
InterPro Mab-21_dom UniProtKB/TrEMBL
  Mab-21_HhH/H2TH-like UniProtKB/TrEMBL
NCBI Gene LOC609000 ENTREZGENE
PANTHER CELL FATE DETERMINING PROTEIN MAB21-RELATED UniProtKB/TrEMBL
  PTHR10656:SF7 UniProtKB/TrEMBL
Pfam Mab-21_C UniProtKB/TrEMBL
SMART Mab-21 UniProtKB/TrEMBL
UniProt A0A8C0Z5F8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PB39_CANLF UniProtKB/TrEMBL
  A0A8P0NQ94 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TIV9_CANLF UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 MAB21L4  mab-21 like 4  LOC100855821  uncharacterized protein C2orf54  Data merged from RGD:12204698 737654 PROVISIONAL
2021-01-12 MAB21L4  mab-21 like 4  LOC609000  uncharacterized protein C2orf54-like  Symbol and/or name change 5135510 APPROVED
2017-09-12 LOC100855821  uncharacterized protein C2orf54  C25H2orf54  chromosome 25 open reading frame, human C2orf54  Symbol and/or name change 5135510 APPROVED